genome.fa.s18.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  111  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34818752--34818844	39	2.4	39	85	3	116	40	29	8	21	1.83
34822279--34822367	33	2.7	33	85	3	108	20	22	14	42	1.88
34827626--34827666	21	1.9	22	85	5	57	70	2	0	26	0.99
34834297--34834425	70	1.9	67	88	4	195	32	14	13	39	1.85
34838456--34838527	28	2.6	28	90	0	108	31	12	26	29	1.93
34838456--34838536	28	3.0	24	76	16	63	33	12	23	30	1.92
34840473--34840544	28	2.6	28	84	4	92	30	11	29	29	1.91
34841595--34842058	23	19.7	23	74	5	381	25	14	17	42	1.87
34841594--34842055	48	9.8	47	73	10	318	26	14	17	41	1.87
34841595--34842055	71	6.5	71	89	1	683	26	14	17	42	1.87
34841595--34842052	141	3.2	141	93	0	736	25	14	17	41	1.88
34842764--34842978	106	2.0	106	92	1	360	33	18	15	32	1.92
34848678--34848711	16	2.1	16	89	10	52	58	0	0	41	0.98
34858153--34858207	24	2.2	25	82	17	71	67	1	0	30	1.01
34858153--34858207	26	2.2	26	84	15	73	67	1	0	30	1.01
34858642--34858844	101	2.0	99	97	1	379	29	13	17	39	1.88
34859066--34859104	9	4.1	9	83	9	51	69	7	2	20	1.26
34861306--34861428	54	2.3	54	86	0	174	21	3	50	25	1.63
34862295--34862685	160	2.5	157	83	6	500	37	16	12	34	1.86
34862801--34862999	82	2.5	78	91	3	308	25	7	17	49	1.71
34865031--34865073	17	2.4	18	80	7	52	32	2	4	60	1.30
34869064--34869096	18	1.9	17	88	11	50	24	9	6	60	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34882531--34882581	24	2.2	23	85	3	66	49	9	3	37	1.55
34885149--34885185	13	2.9	13	88	4	58	29	8	21	40	1.82
34890672--34891012	170	2.0	170	99	0	673	35	12	18	33	1.88
34897478--34897589	40	2.9	38	72	19	117	25	17	22	33	1.96
34900088--34900139	24	2.2	24	92	0	86	34	1	7	55	1.39
34905806--34905842	16	2.2	18	85	9	51	54	0	16	29	1.43
34908788--34908818	9	3.4	9	95	0	53	61	3	0	35	1.12
34912602--34912704	53	1.9	53	90	0	161	27	20	15	36	1.93
34912981--34913051	30	2.4	30	85	0	97	23	25	7	43	1.79
34915382--34915442	20	3.0	20	80	0	77	21	26	19	32	1.97
34918594--34918664	21	3.4	21	84	0	79	16	35	25	22	1.95
34927924--34927966	21	2.0	21	82	8	52	53	2	0	44	1.13
34930888--34930926	19	2.1	19	100	0	78	35	5	20	38	1.75
34931016--34931069	22	2.4	22	87	3	72	51	3	1	42	1.30
34931014--34931069	23	2.5	23	85	2	78	51	3	1	42	1.29
34931045--34931084	16	2.5	16	91	0	62	47	2	7	42	1.45
34931087--34931206	59	2.1	59	90	1	197	41	5	9	44	1.58
34931272--34931315	24	1.9	24	90	9	74	61	2	0	36	1.09
34935452--34935822	44	8.3	44	77	8	273	28	22	17	32	1.96
34935452--34935820	89	4.1	87	73	11	289	28	22	17	32	1.96
34935583--34935891	139	2.2	140	88	2	462	28	22	17	31	1.96
34947915--34947951	18	2.0	19	94	5	67	62	0	10	27	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34949611--34949745	40	3.4	40	78	3	130	37	21	20	20	1.94
34950595--34950637	14	3.1	14	86	0	59	18	2	37	41	1.63
34957354--34957395	22	1.9	22	85	0	57	40	4	4	50	1.45
34957636--34957691	28	2.0	28	100	0	112	35	10	17	35	1.85
34959029--34959088	30	2.0	31	86	3	86	40	0	38	21	1.54
34959193--34959253	30	2.0	31	87	3	88	34	0	44	21	1.53
34959202--34959261	30	2.0	30	83	0	75	38	0	38	23	1.55
34959302--34959338	9	4.1	9	85	0	56	32	10	10	45	1.74
34965855--34965925	25	2.8	25	91	0	106	29	26	19	23	1.98
34968944--34969143	106	1.9	106	84	4	269	29	13	19	38	1.89
34971945--34972086	50	2.8	50	85	0	194	27	21	28	21	1.99
34975928--34975954	13	2.1	13	100	0	54	33	22	7	37	1.82
34978911--34978937	6	4.5	6	100	0	54	85	0	14	0	0.61
34983676--34983763	46	1.9	46	82	13	110	50	3	7	38	1.49
34986357--34986411	27	2.2	26	83	9	69	43	29	0	27	1.55
34986943--34986986	23	1.9	24	90	9	74	22	20	2	54	1.56
34987848--34987897	3	16.7	3	87	8	75	64	2	0	34	1.05
34990202--34990238	18	2.1	17	90	5	56	29	0	0	70	0.88
34995448--34995526	3	26.3	3	94	5	142	65	0	32	1	1.00
34997245--34997300	21	2.7	21	94	0	94	19	14	30	35	1.91
34998535--34998606	33	2.2	33	87	5	101	27	20	25	26	1.99
34998703--34998757	26	2.1	26	86	0	74	40	23	18	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34999076--34999144	29	2.4	29	83	13	81	26	39	20	14	1.91
34999131--34999168	20	1.9	20	88	0	58	26	39	13	21	1.89
35002054--35002113	7	8.6	7	100	0	120	56	0	0	43	0.99
35002126--35002172	19	2.3	22	79	20	57	40	4	2	53	1.32
35002058--35002255	14	14.4	14	70	17	69	43	2	3	51	1.28
35002175--35002215	21	2.0	21	95	0	73	26	4	0	68	1.10
35006096--35006147	6	8.2	6	76	19	52	19	0	3	76	0.93
35006096--35006147	19	2.7	19	87	3	68	19	0	3	76	0.93
35006097--35006146	14	3.5	15	78	13	52	20	0	4	76	0.95
35013032--35013292	138	1.9	137	85	6	357	20	21	27	30	1.98
35017581--35017714	48	2.8	48	85	1	180	32	19	15	32	1.93
35018666--35018719	26	2.1	26	96	0	99	12	11	24	51	1.72
35020189--35020238	22	2.3	22	79	3	57	58	8	6	28	1.51
35022796--35022999	54	3.8	54	78	2	151	38	13	20	27	1.90
35027175--35027291	25	4.5	26	68	9	85	43	0	3	52	1.17
35027203--35027255	23	2.4	22	81	12	63	35	0	5	58	1.22
35027200--35027261	17	3.4	17	74	20	54	40	0	4	54	1.22
35027186--35027293	40	2.7	39	71	18	98	43	0	3	52	1.19
35027275--35027314	20	2.0	21	85	5	55	35	0	5	60	1.19
35027347--35027380	17	2.0	17	100	0	68	41	0	0	58	0.98
35027347--35027394	15	3.0	15	81	9	51	41	2	0	56	1.11
35027231--35027634	117	3.5	117	94	0	702	42	1	3	51	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35027464--35027497	17	2.0	17	100	0	68	41	0	0	58	0.98
35027581--35027614	17	2.0	17	100	0	68	41	0	0	58	0.98
35027581--35027628	15	3.0	15	81	9	51	41	2	0	56	1.11
35027761--35027865	44	2.5	41	76	18	124	37	29	3	29	1.75
35027777--35027867	46	2.0	46	91	4	150	39	29	4	26	1.75
35027847--35027899	16	3.3	16	97	0	97	20	33	5	39	1.76
35031448--35031513	22	3.3	21	74	24	70	37	30	16	15	1.90
35031448--35031540	38	2.4	38	87	0	132	38	29	15	17	1.90
35033452--35033795	187	1.8	187	92	0	580	28	20	11	38	1.88
35037466--35037516	25	2.0	25	100	0	102	21	19	15	43	1.88
35038529--35038590	26	2.3	26	88	2	88	35	9	22	32	1.87
35039157--35039184	12	2.3	12	100	0	56	35	7	10	46	1.66
35047086--35047120	14	2.5	14	90	0	52	28	5	14	51	1.65
35053601--35053654	26	2.1	26	96	0	99	33	7	27	31	1.84
35054352--35054394	22	2.0	22	90	4	70	34	0	9	55	1.32
35055732--35055967	85	2.8	85	88	1	332	35	25	15	23	1.94
35055743--35055964	43	5.3	42	76	10	202	36	25	14	22	1.93
35067006--35067039	17	2.0	17	100	0	68	41	5	35	17	1.74
35076595--35076638	18	2.4	18	85	7	54	9	6	6	77	1.13
35079035--35079448	206	2.0	206	89	0	632	33	10	19	36	1.86
35097581--35097623	20	2.1	21	91	4	70	67	2	9	20	1.30
35099025--35099331	40	7.7	40	84	0	308	22	26	15	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35099044--35099331	120	2.4	120	82	0	342	21	26	16	35	1.94
35100719--35100780	23	2.6	24	80	12	83	50	12	11	25	1.74
35107370--35107417	24	2.0	24	100	0	96	25	25	20	29	1.99
35109986--35110022	17	2.2	17	90	9	58	8	21	0	70	1.13
35111280--35111328	25	2.0	24	84	7	64	51	8	8	32	1.61
35115108--35115140	17	1.9	17	100	0	66	24	18	30	27	1.98
35115113--35115151	17	2.3	17	86	0	51	28	23	30	17	1.97
35119497--35119552	28	2.0	28	96	0	103	21	26	42	8	1.82
35130376--35130441	28	2.4	28	81	0	78	4	24	37	33	1.76
35130639--35130696	10	5.4	11	75	10	57	1	22	0	75	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153