genome.fa.s18.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  109  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34128978--34129074	48	2.0	49	90	6	153	42	19	22	15	1.89
34134304--34134334	11	2.7	11	95	5	53	9	12	12	64	1.50
34138500--34138529	15	2.0	15	93	0	51	23	20	26	30	1.98
34142676--34142845	86	2.0	86	94	0	295	29	24	21	24	1.99
34148702--34148727	12	2.2	12	100	0	52	34	15	23	26	1.94
34150763--34150905	73	2.0	71	87	4	198	25	18	25	29	1.98
34151131--34151162	16	2.0	16	93	0	55	59	0	15	25	1.36
34155594--34155674	26	3.2	26	68	28	82	22	13	29	34	1.92
34155480--34155674	51	3.9	51	78	9	204	24	16	27	31	1.96
34155898--34155929	16	2.0	16	93	0	55	59	0	15	25	1.36
34157511--34157552	21	2.0	21	86	9	59	28	2	14	54	1.52
34172702--34172766	27	2.4	27	82	5	78	21	24	18	35	1.96
34172820--34172927	27	3.9	27	77	15	96	31	8	19	40	1.81
34172817--34172953	56	2.5	54	80	5	141	32	8	18	40	1.81
34172883--34173066	27	6.8	27	79	4	176	30	9	20	39	1.84
34173065--34173262	27	7.3	27	89	2	263	38	8	25	28	1.84
34173065--34173262	81	2.4	81	92	1	317	38	8	25	28	1.84
34182658--34182735	29	2.7	28	84	11	104	25	14	30	29	1.94
34182688--34183015	174	1.9	174	96	0	611	29	14	24	31	1.94
34188261--34188406	50	2.9	49	79	7	141	24	26	21	26	2.00
34195166--34195203	19	2.0	19	85	10	51	21	42	0	36	1.53
34204207--34204263	17	2.8	22	67	25	61	29	5	19	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34204207--34204284	39	2.0	39	82	5	95	32	6	15	46	1.71
34211684--34211820	71	1.9	71	88	2	204	29	16	23	29	1.96
34212973--34213107	51	2.7	50	84	4	173	22	20	26	31	1.98
34213333--34213364	16	2.0	16	93	0	55	59	0	15	25	1.36
34215434--34215479	20	2.3	20	100	0	92	34	10	4	50	1.57
34217949--34218012	30	2.1	30	94	0	110	35	17	25	21	1.95
34226149--34226182	11	2.8	13	91	8	54	44	11	8	35	1.72
34227238--34227421	76	2.4	76	90	2	291	22	18	25	33	1.97
34227281--34227419	43	3.5	41	71	18	132	23	17	25	34	1.96
34227322--34227524	103	2.0	103	93	1	345	20	19	27	32	1.97
34227400--34227560	33	4.7	33	71	21	102	22	21	26	30	1.99
34230667--34230776	50	2.2	50	88	0	157	22	10	30	35	1.89
34231899--34231945	24	2.0	23	91	4	76	61	8	0	29	1.25
34232840--34232872	17	2.0	17	88	5	50	36	0	0	63	0.95
34232847--34232895	18	2.8	18	84	3	55	40	0	2	57	1.10
34243932--34243961	15	2.1	15	93	6	53	30	6	40	23	1.80
34256076--34256134	30	2.0	29	83	9	75	47	6	3	42	1.46
34257539--34257608	30	2.3	31	80	11	83	55	5	0	38	1.24
34257589--34257638	17	2.9	17	75	18	50	62	0	4	34	1.14
34262052--34264287	697	3.2	695	89	2	3362	29	15	12	42	1.84
34264397--34264448	17	3.1	17	81	10	63	50	3	11	34	1.57
34274538--34275996	695	2.1	695	89	1	2251	28	15	13	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34275897--34275924	12	2.3	12	100	0	56	50	0	0	50	1.00
34285867--34285899	9	3.7	9	88	11	50	72	0	0	27	0.85
34285874--34285898	10	2.5	10	100	0	50	76	0	0	24	0.80
34286015--34286054	20	2.1	20	86	9	57	57	2	0	40	1.12
34286674--34286715	21	2.0	21	86	9	59	35	2	0	61	1.09
34286747--34286781	10	3.4	10	88	4	52	57	2	0	40	1.14
34287491--34287527	9	4.1	9	85	0	56	32	10	10	45	1.74
34287752--34287807	25	2.4	24	82	11	71	32	0	5	62	1.18
34289002--34289041	16	2.5	16	80	12	55	45	0	0	55	0.99
34289027--34289062	19	1.9	19	94	5	65	61	0	0	38	0.96
34290294--34290320	5	5.4	5	100	0	54	40	0	0	59	0.98
34291941--34292092	22	7.0	22	78	5	105	41	16	24	17	1.89
34293085--34293140	20	2.8	18	81	13	58	44	12	0	42	1.42
34306952--34307250	149	2.0	149	95	0	535	29	17	15	37	1.91
34311390--34311429	17	2.3	18	86	4	55	42	0	5	52	1.23
34311512--34311560	21	2.3	22	89	3	73	30	0	2	67	1.02
34312177--34312213	6	6.2	6	93	0	56	83	0	16	0	0.64
34312170--34312211	21	2.0	21	86	9	59	83	2	14	0	0.75
34313690--34313972	126	2.3	125	87	4	401	30	15	22	31	1.95
34315271--34315513	30	8.2	30	87	2	348	30	0	23	46	1.58
34315271--34315513	59	4.1	60	90	1	348	30	0	23	46	1.58
34315271--34315513	89	2.7	89	93	1	407	30	0	23	46	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34315440--34315484	23	1.9	23	90	4	72	33	0	22	44	1.53
34319951--34320948	499	2.0	499	100	0	1996	38	17	9	35	1.81
34329236--34329438	49	3.9	50	83	10	248	32	29	14	24	1.94
34329319--34329437	58	2.0	59	98	1	231	31	31	13	23	1.93
34329328--34329418	28	3.2	28	66	22	80	27	31	15	25	1.95
34343804--34343883	24	3.3	24	77	7	72	46	1	1	51	1.17
34343816--34343882	25	2.6	26	79	9	75	50	1	1	46	1.19
34346902--34346944	7	6.0	7	78	5	50	46	0	39	13	1.44
34373434--34373500	27	2.4	27	92	5	107	16	4	13	65	1.42
34373912--34373953	17	2.4	17	92	4	66	35	26	9	28	1.88
34373913--34373953	9	4.7	9	84	6	57	34	26	9	29	1.88
34373999--34374059	17	3.4	17	70	12	59	50	14	3	31	1.59
34373957--34374059	37	2.9	37	94	5	178	49	14	4	31	1.64
34373982--34374042	20	3.2	20	68	13	65	44	16	6	32	1.73
34381101--34381159	27	2.3	27	83	11	72	32	25	0	42	1.55
34381125--34381170	23	2.0	24	82	4	58	32	26	0	41	1.56
34383395--34383646	134	1.9	133	94	0	450	40	13	16	30	1.87
34384435--34384464	14	2.1	14	100	0	60	23	20	6	50	1.71
34389983--34390057	15	5.6	13	73	17	57	61	1	6	30	1.30
34391611--34391914	87	3.5	87	72	9	296	26	21	21	30	1.98
34392073--34392471	85	4.7	85	91	2	667	24	21	21	32	1.98
34392279--34392414	42	3.2	42	67	13	116	23	19	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34392073--34392471	169	2.3	169	95	1	710	24	21	21	32	1.98
34394711--34394746	17	2.1	18	89	5	56	5	8	5	80	1.01
34397161--34397203	19	2.3	19	84	8	52	41	13	20	23	1.88
34399082--34399120	13	3.1	13	85	14	55	53	0	2	43	1.14
34399326--34399400	15	5.6	13	73	17	57	61	1	6	30	1.30
34407468--34407783	109	2.9	108	90	2	492	29	16	18	34	1.93
34411515--34411564	3	17.7	3	80	15	54	74	0	26	0	0.83
34411505--34411564	20	3.0	20	88	7	79	75	0	23	1	0.90
34411494--34411557	17	3.8	17	82	11	71	76	0	21	1	0.87
34411519--34411564	14	3.5	13	77	17	51	76	0	23	0	0.79
34412802--34413114	89	3.6	89	85	6	435	28	25	23	22	1.99
34412920--34413081	81	2.0	81	92	0	270	27	26	24	20	1.99
34413128--34413483	44	8.1	44	72	13	182	31	17	24	26	1.97
34413151--34413436	132	2.2	132	92	0	464	30	18	24	26	1.98
34413496--34413641	50	2.9	50	71	1	139	29	20	23	26	1.99
34413503--34413688	101	1.9	100	87	3	275	29	20	23	26	1.99
34413743--34414077	44	7.8	43	71	6	205	30	19	21	28	1.97
34413697--34414071	129	2.9	127	84	3	473	30	20	21	28	1.98
34413701--34414076	85	4.4	85	69	11	239	30	19	21	28	1.98
34415736--34415826	47	1.9	47	86	4	130	34	5	4	56	1.43
34416237--34416548	109	2.9	107	89	2	475	30	16	18	34	1.93
34418311--34418370	29	2.1	29	87	6	86	41	0	5	53	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34426614--34426656	22	2.0	22	85	0	59	39	16	27	16	1.90
34427648--34427700	5	10.2	5	89	6	79	58	0	0	41	0.98
34427648--34427700	26	2.0	26	89	7	81	58	0	0	41	0.98
34429934--34429971	11	3.5	11	85	10	51	28	10	0	60	1.30
34432085--34432123	20	2.0	20	100	0	78	41	0	23	35	1.55
34435478--34435511	15	2.3	15	94	0	59	0	20	0	79	0.73
34436341--34436367	3	9.0	3	100	0	54	0	0	33	66	0.92
34442352--34442420	30	2.3	30	87	0	93	34	14	24	26	1.94
34452783--34452842	29	2.1	29	100	0	120	46	16	16	20	1.84
34456744--34456810	9	7.4	9	91	0	107	41	23	8	25	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153