genome.fa.s18.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  12  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3983790--3983817	14	2.0	14	100	0	56	28	57	0	14	1.38
3992715--3992763	22	2.4	21	80	10	57	36	0	0	63	0.95
3992960--3993016	15	3.5	15	73	17	60	49	5	0	45	1.24
3997922--3997982	27	2.3	25	76	15	59	75	4	8	11	1.18
3998143--3998256	49	2.3	50	92	4	189	30	7	13	48	1.70
3998921--3998960	21	1.9	21	100	0	80	45	0	7	47	1.31
4004234--4004267	3	11.3	3	93	0	59	32	29	0	38	1.58
4004943--4005001	10	5.5	10	75	15	55	66	1	1	30	1.12
4005016--4005066	26	1.9	26	84	4	66	47	1	3	47	1.32
4013493--4013562	25	2.8	25	75	10	72	48	0	1	50	1.09
4013490--4013542	21	2.6	21	78	3	63	47	0	1	50	1.12
4013518--4013572	14	3.8	15	76	21	55	49	0	1	49	1.11
4014574--4014620	3	15.7	3	95	0	85	34	0	2	63	1.06
4018234--4018273	10	3.9	10	93	3	62	47	2	0	50	1.14
4019547--4019628	31	2.7	31	81	3	78	53	15	1	29	1.50
4021727--4022027	151	2.0	151	99	0	593	34	18	13	32	1.90
4030897--4031154	132	2.0	132	85	3	349	29	17	21	31	1.96
4031029--4031364	150	2.2	150	83	3	399	28	18	19	33	1.96
4037808--4037841	9	3.9	9	84	7	52	2	17	0	79	0.86
4037808--4037841	17	2.0	17	94	0	59	2	17	0	79	0.86
4037850--4037922	5	14.6	5	76	20	64	54	4	1	39	1.28
4037851--4037893	19	2.3	19	92	8	70	55	0	2	41	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4037857--4037921	24	2.7	24	80	9	69	56	4	1	36	1.29
4041052--4041116	33	1.9	34	90	9	107	47	10	7	33	1.67
4044938--4044998	18	3.4	18	68	14	54	54	3	0	42	1.17
4044981--4045027	19	2.4	19	85	3	58	63	4	0	31	1.13
4044992--4045033	19	2.2	19	83	8	50	64	4	2	28	1.26
4053740--4053798	18	3.3	18	100	0	118	33	28	5	32	1.79
4054209--4054238	12	2.5	12	94	0	51	36	10	0	53	1.35
4055376--4055440	33	2.0	33	82	11	80	43	1	4	50	1.32
4062091--4062126	18	2.1	18	89	5	56	11	8	5	75	1.19
4062596--4062637	21	2.0	21	100	0	84	28	23	19	28	1.98
4066225--4066265	13	3.0	14	82	7	57	31	0	2	65	1.05
4066225--4066270	13	3.5	13	84	3	56	36	0	2	60	1.09
4073352--4073377	6	4.3	6	100	0	52	15	0	0	84	0.62
4077187--4077256	35	2.0	35	97	0	131	27	22	15	34	1.95
4077622--4077896	136	2.0	136	96	0	505	25	22	17	34	1.95
4089432--4089481	25	2.0	25	88	0	73	4	34	4	58	1.36
4092386--4092438	21	2.5	21	90	0	79	30	35	9	24	1.87
4097564--4097757	96	2.0	96	87	0	280	23	15	36	24	1.94
4101729--4101769	17	2.6	16	85	11	57	12	7	4	75	1.16
4104454--4104505	24	2.2	24	89	0	77	55	9	1	32	1.43
4106424--4106475	24	2.2	24	89	0	77	55	9	1	32	1.43
4106629--4106682	25	2.1	26	86	3	74	44	9	3	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4109616--4109733	58	2.0	58	100	0	236	32	15	13	38	1.86
4111191--4111275	29	2.9	29	72	10	82	57	3	1	37	1.23
4111254--4111331	39	2.0	39	100	0	156	43	15	7	33	1.75
4113335--4113373	11	3.5	11	83	13	53	10	7	17	64	1.48
4113325--4113385	22	2.8	22	78	9	61	11	9	18	60	1.57
4113350--4113393	22	2.0	22	81	0	52	13	11	15	59	1.62
4114728--4114791	31	2.1	30	88	5	94	35	17	9	37	1.82
4123246--4123306	30	2.0	30	100	0	122	31	13	16	39	1.87
4134380--4135035	335	1.9	341	85	5	920	35	11	14	37	1.83
4140315--4140347	13	2.4	14	90	5	50	54	3	0	42	1.15
4140298--4140338	16	2.4	17	84	12	57	58	2	0	39	1.11
4143085--4143194	20	5.5	20	75	6	80	43	12	4	39	1.63
4143236--4143316	20	4.1	19	78	13	74	50	7	7	34	1.58
4143237--4143315	40	2.0	40	82	9	99	49	7	7	35	1.60
4143659--4143692	17	2.0	17	88	0	50	47	0	0	52	1.00
4151699--4151745	20	2.2	23	85	11	64	38	6	2	53	1.39
4169709--4169997	126	2.3	126	92	0	488	33	19	20	25	1.96
4169917--4171597	840	2.0	839	95	0	3020	29	17	23	29	1.97
4172243--4172298	29	1.9	29	89	7	87	50	3	7	39	1.47
4172294--4172334	11	3.7	11	83	0	55	41	0	29	29	1.56
4172292--4172356	22	3.0	22	75	6	62	44	0	29	26	1.54
4174279--4174334	20	2.9	19	73	23	55	46	3	0	50	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4178522--4178560	18	2.2	17	86	13	53	33	0	20	46	1.51
4178786--4178861	23	3.3	23	81	7	100	23	18	26	31	1.97
4181716--4181782	11	6.2	11	76	8	57	68	5	7	17	1.34
4181705--4181772	33	2.1	33	88	0	100	64	7	7	20	1.43
4181716--4181783	33	2.1	33	85	0	91	69	5	7	17	1.33
4188152--4188220	32	2.2	32	100	0	138	42	18	11	27	1.85
4192784--4193352	126	4.5	125	90	1	847	30	17	23	29	1.97
4192784--4193348	253	2.3	249	90	2	882	30	17	23	29	1.97
4196027--4196075	13	3.7	13	72	5	53	28	0	0	71	0.86
4196880--4197006	21	6.0	21	78	9	132	25	3	26	44	1.69
4196880--4197006	43	3.0	42	82	2	155	25	3	26	44	1.69
4196883--4197006	64	2.0	63	83	4	160	25	3	27	43	1.70
4196974--4197027	27	2.0	27	85	0	72	20	1	37	40	1.63
4198455--4198492	20	1.9	20	84	10	51	55	7	2	34	1.43
4199428--4199527	51	2.0	51	80	4	112	45	2	25	28	1.65
4199487--4199541	22	2.5	22	77	16	60	38	1	34	25	1.67
4202916--4202961	23	2.0	24	91	4	76	58	8	2	30	1.40
4204894--4204928	18	1.9	18	88	0	52	31	28	14	25	1.95
4207669--4207792	63	2.0	63	96	0	230	35	22	17	24	1.95
4208610--4208663	22	2.5	22	81	0	54	57	1	3	37	1.27
4212277--4212332	18	2.9	18	81	7	67	32	26	1	39	1.67
4212278--4212338	27	2.1	29	91	8	99	29	29	3	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4214084--4214121	18	2.1	18	90	0	58	23	28	10	36	1.88
4217632--4217899	125	2.1	126	90	0	421	29	14	19	36	1.91
4217955--4218067	33	3.5	31	81	12	147	44	13	0	41	1.49
4218113--4218192	42	1.9	41	89	2	124	46	25	1	27	1.61
4224395--4224495	46	2.2	46	90	0	157	32	26	5	34	1.81
4224471--4224520	25	2.0	25	92	0	82	30	26	6	38	1.80
4224428--4224566	71	2.0	71	89	0	215	30	27	5	35	1.80
4224496--4224646	46	3.3	46	88	0	230	29	23	7	40	1.81
4224395--4224612	117	1.9	117	86	1	312	31	24	6	38	1.81
4232227--4232282	21	2.7	19	75	24	51	48	10	3	37	1.56
4233877--4233936	23	2.5	23	82	12	68	63	0	0	36	0.95
4233884--4233928	18	2.5	19	75	13	51	66	0	0	33	0.92
4234342--4234393	25	2.1	24	85	3	68	26	7	1	63	1.32
4244827--4244871	23	1.9	24	81	4	56	48	2	4	44	1.35
4245548--4245580	17	1.9	17	88	11	50	42	0	3	54	1.15
4253701--4253742	18	2.3	18	80	8	50	14	9	7	69	1.37
4255984--4256029	24	1.9	24	100	0	92	36	13	13	36	1.83
4263865--4263909	22	2.0	22	87	8	65	51	0	0	48	1.00
4264740--4264770	7	4.4	7	100	0	62	12	41	29	16	1.85
4269011--4269062	27	1.9	27	92	0	86	15	0	69	15	1.20
4284144--4284192	16	3.1	16	81	0	62	42	6	28	22	1.77
4284425--4284459	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4284550--4284764	26	8.3	26	66	15	106	54	3	0	41	1.20
4284346--4284635	145	2.0	145	88	5	435	48	3	2	45	1.32
4284570--4284785	100	2.2	99	96	0	396	55	2	0	40	1.21
4291621--4291672	24	2.2	24	86	6	70	42	1	3	51	1.31
4291942--4291977	18	2.0	18	94	0	63	22	19	13	44	1.86
4292231--4292262	17	1.9	17	93	6	57	43	0	0	56	0.99
4292476--4292532	29	2.0	30	86	6	82	47	5	0	47	1.24
4292795--4292822	4	7.0	4	100	0	56	25	0	25	50	1.50
4295085--4295397	157	2.0	157	97	0	590	39	14	22	23	1.91
4314682--4314720	17	2.3	17	90	0	60	17	15	0	66	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153