genome.fa.s18.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  152  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47669511--47669611	45	2.2	45	92	3	168	41	26	20	10	1.85
47669590--47669647	20	2.8	21	80	10	57	39	20	20	18	1.92
47672038--47672087	26	2.0	26	84	7	68	38	16	6	40	1.73
47672245--47672331	25	3.5	24	77	16	88	28	18	22	29	1.97
47672265--47672342	25	3.1	25	84	0	102	30	14	24	30	1.94
47681553--47681599	18	2.4	20	80	20	55	21	8	6	63	1.44
47684998--47685080	28	2.7	30	82	14	100	18	19	31	31	1.95
47684893--47685125	103	2.3	103	91	1	369	21	18	27	33	1.97
47703264--47703300	15	2.5	15	95	0	65	78	0	21	0	0.75
47720191--47720372	28	6.5	28	98	0	330	25	11	28	34	1.91
47726060--47726096	19	2.1	19	90	10	60	56	8	10	24	1.60
47729235--47729379	41	3.6	41	83	0	175	28	20	27	23	1.99
47733394--47733678	43	6.6	44	77	7	185	32	27	15	25	1.95
47733394--47733678	86	3.3	84	83	2	311	32	27	15	25	1.95
47733408--47733678	129	2.1	128	82	2	319	31	27	14	26	1.95
47733643--47733705	32	2.0	32	93	3	110	36	36	9	17	1.82
47739609--47739829	9	26.6	9	67	18	79	35	1	17	45	1.57
47739616--47739828	18	12.9	17	66	21	105	36	1	16	45	1.57
47739585--47739828	66	3.7	66	98	0	470	35	1	16	46	1.57
47739880--47739906	13	2.1	13	100	0	54	37	11	0	51	1.37
47741937--47741988	23	2.3	23	83	3	70	21	1	32	44	1.63
47745130--47745327	76	2.6	75	81	5	240	38	2	38	19	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47749523--47749563	21	1.9	22	90	5	66	21	2	17	58	1.50
47752128--47752155	11	2.5	11	100	0	56	7	25	21	46	1.76
47753363--47753405	16	2.7	16	89	7	61	34	0	4	60	1.17
47756678--47756728	10	5.2	9	75	25	50	33	15	27	23	1.95
47756678--47756729	20	2.6	21	90	9	90	32	17	26	23	1.96
47764132--47764222	40	2.3	40	92	3	148	24	19	27	28	1.99
47766758--47768028	634	2.0	634	97	0	2398	23	20	26	29	1.99
47772602--47772785	40	4.6	40	86	6	232	24	22	27	25	2.00
47775895--47776088	58	3.3	57	82	7	221	39	13	24	22	1.91
47775919--47776090	29	5.8	29	85	6	220	38	14	25	21	1.91
47780251--47780362	22	5.4	22	71	12	101	33	28	18	18	1.95
47780251--47780380	60	2.2	60	87	0	179	33	28	19	18	1.95
47784650--47784702	27	2.0	27	84	0	70	35	24	18	20	1.95
47784767--47784824	24	2.5	23	80	8	64	20	5	24	50	1.69
47784888--47784947	27	2.3	27	81	16	72	20	25	21	33	1.97
47784970--47785203	32	7.4	32	78	3	213	20	20	20	38	1.94
47784997--47785203	95	2.2	94	81	2	225	21	20	20	38	1.94
47787931--47787984	22	2.5	22	90	0	81	37	33	16	12	1.87
47791757--47791893	38	3.6	38	80	10	102	46	12	9	31	1.73
47791783--47791893	38	2.9	38	84	2	132	45	11	9	33	1.72
47795567--47795705	27	5.2	26	76	10	127	40	22	17	20	1.91
47795574--47795707	54	2.5	54	82	4	164	39	22	17	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47797199--47797247	22	2.2	22	85	0	62	4	16	2	77	1.01
47798794--47798824	9	3.4	9	100	0	62	19	12	9	58	1.62
47802204--47802260	29	2.0	29	82	6	71	29	21	0	49	1.50
47803132--47803175	19	2.3	19	88	7	63	56	0	22	20	1.42
47804080--47804133	18	3.1	18	84	10	67	33	18	1	46	1.60
47804104--47804139	18	2.0	18	94	0	63	30	22	0	47	1.52
47810714--47810891	27	6.6	27	83	3	205	26	15	28	29	1.96
47810715--47810870	82	1.9	81	88	3	233	26	15	28	29	1.96
47810711--47810891	82	2.2	81	83	2	229	27	15	27	29	1.96
47816243--47816420	27	6.6	27	83	3	205	26	15	28	29	1.96
47816244--47816399	82	1.9	81	88	3	233	26	15	28	29	1.96
47816240--47816420	82	2.2	81	83	2	229	27	15	27	29	1.96
47825575--47825656	25	3.3	25	87	0	119	30	23	15	30	1.96
47834016--47834233	47	4.6	47	93	3	355	32	9	27	30	1.88
47834016--47835055	96	11.2	94	83	10	1142	33	8	29	28	1.87
47834207--47834261	28	2.0	28	92	0	92	30	14	25	29	1.95
47834236--47835055	47	17.3	47	95	1	1442	33	8	29	28	1.86
47834159--47834308	77	2.0	76	94	2	266	32	10	28	28	1.90
47834236--47835055	237	3.5	235	95	1	1442	33	8	29	28	1.86
47834905--47834980	22	3.3	22	66	10	62	28	9	31	30	1.88
47837978--47838091	58	2.0	58	87	0	165	25	15	25	33	1.95
47839303--47839603	51	5.9	52	79	5	330	23	18	28	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47839311--47839596	101	2.8	101	95	1	493	23	18	27	30	1.98
47839316--47839603	152	1.9	151	82	3	355	23	18	27	30	1.98
47839600--47839694	45	2.1	45	84	3	129	28	16	22	32	1.96
47847934--47848022	35	2.5	35	85	0	115	26	17	13	41	1.87
47848722--47848796	22	3.4	22	75	0	69	34	16	14	34	1.89
47849866--47849898	15	2.1	16	88	5	50	51	0	42	6	1.26
47851023--47851149	63	2.0	64	98	1	247	56	12	13	17	1.67
47853834--47853902	28	2.5	28	78	0	75	43	31	1	23	1.63
47853894--47853968	26	2.8	27	76	8	73	40	33	5	21	1.76
47856692--47856868	43	4.1	43	77	7	171	25	15	25	33	1.95
47856790--47856889	42	2.4	42	80	10	114	29	16	24	31	1.96
47859269--47859328	32	1.9	32	89	3	95	45	5	16	33	1.69
47859965--47860016	22	2.4	22	83	0	68	50	19	13	17	1.78
47860008--47860178	32	5.4	32	85	6	213	40	19	18	21	1.92
47860225--47860286	27	2.3	26	79	15	74	32	19	25	22	1.97
47860360--47860402	11	3.7	11	76	11	50	53	27	4	13	1.60
47860364--47860460	24	4.0	24	82	5	108	45	22	7	24	1.78
47860477--47860547	27	2.7	26	86	6	99	18	22	22	36	1.95
47860496--47860570	27	2.8	27	85	4	89	20	20	17	42	1.89
47862712--47863017	97	3.2	97	95	0	531	45	3	16	34	1.65
47862793--47862948	51	3.2	51	64	15	146	43	3	17	35	1.66
47866733--47866770	17	2.4	17	91	8	62	55	0	13	31	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47867322--47867356	13	2.8	13	86	4	54	34	2	5	57	1.37
47867477--47867562	44	2.0	44	95	0	154	30	8	36	25	1.85
47869968--47870053	45	1.9	45	85	0	118	12	25	1	60	1.40
47870030--47870103	29	2.5	29	84	8	87	6	24	1	67	1.22
47870981--47871016	13	2.8	13	91	0	54	33	8	2	55	1.44
47871209--47871315	52	2.0	53	96	1	198	26	5	41	27	1.78
47884403--47884524	37	3.2	37	64	22	97	16	15	9	58	1.63
47884377--47884614	79	3.0	79	97	1	442	20	13	10	55	1.67
47884440--47884566	42	3.1	42	64	22	117	22	14	9	54	1.68
47884907--47884938	15	2.1	15	94	0	55	0	21	0	78	0.76
47891960--47891991	15	2.1	15	94	0	55	0	21	0	78	0.76
47895509--47895627	36	3.3	35	81	9	123	14	13	32	39	1.85
47897774--47897827	20	2.7	20	82	0	63	24	20	18	37	1.94
47897774--47897847	30	2.5	30	86	8	98	21	20	18	39	1.93
47897774--47897838	20	3.2	20	71	16	53	23	21	16	38	1.93
47900613--47900678	33	2.0	33	82	8	80	33	16	22	27	1.96
47904151--47904209	20	3.0	20	84	0	73	32	35	15	16	1.90
47909812--47909863	23	2.3	22	75	21	54	9	23	1	65	1.32
47909857--47909895	18	2.2	18	85	0	51	12	23	2	61	1.43
47910149--47910201	23	2.4	22	76	20	56	9	18	1	69	1.25
47910440--47910502	33	1.9	33	84	12	85	12	26	6	53	1.62
47910500--47910555	21	2.7	21	72	5	51	8	17	1	71	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47910499--47910555	14	4.1	14	75	16	57	8	17	1	71	1.19
47910517--47910624	6	17.7	6	69	9	67	6	17	3	72	1.21
47911716--47912017	152	2.0	150	98	1	586	35	21	11	31	1.89
47912438--47912500	33	1.9	33	84	12	85	14	25	4	55	1.58
47912497--47912583	27	3.1	27	80	9	97	11	18	1	68	1.25
47912515--47912557	17	2.4	18	84	7	61	13	18	0	67	1.23
47912518--47912583	29	2.4	27	87	10	89	12	18	0	69	1.18
47912518--47912616	12	8.6	12	68	20	59	12	20	1	66	1.29
47912540--47912626	24	3.5	24	71	12	68	10	24	1	64	1.32
47913152--47913218	21	3.1	21	82	4	80	29	2	32	34	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153