genome.fa.s18.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  133  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41807322--41807756	88	4.9	88	92	0	690	26	25	22	25	2.00
41807436--41807760	44	7.4	43	64	12	140	26	25	23	24	2.00
41808918--41808951	7	5.0	7	92	7	61	14	14	0	70	1.17
41808918--41808947	13	2.3	13	100	0	60	13	13	0	73	1.10
41809897--41809949	24	2.2	25	89	3	81	7	3	7	81	0.99
41817504--41817853	188	1.9	187	88	1	531	31	18	22	27	1.97
41817712--41817961	112	2.2	113	83	7	310	31	17	24	27	1.97
41817469--41818262	300	2.6	299	89	3	1159	32	18	22	26	1.97
41817890--41818026	74	1.9	73	87	1	202	32	16	21	29	1.95
41817938--41818290	114	3.1	113	78	5	381	31	18	23	27	1.97
41818310--41818367	16	3.6	16	92	2	98	32	0	8	58	1.28
41818311--41818384	17	4.1	19	71	22	61	33	0	8	58	1.28
41818310--41818384	32	2.2	33	88	9	107	33	0	8	58	1.27
41819129--41819277	72	2.1	72	96	0	280	32	20	16	30	1.95
41820595--41820629	3	11.7	3	100	0	70	68	0	0	31	0.90
41821603--41822213	9	70.2	9	75	13	500	47	21	0	31	1.54
41821596--41822204	156	3.8	155	92	6	842	46	21	0	31	1.55
41821794--41822204	78	5.3	78	100	0	822	47	21	0	30	1.51
41827688--41827758	21	3.4	21	86	0	97	32	18	45	4	1.69
41828077--41828278	42	4.8	42	86	6	293	32	21	20	25	1.98
41828075--41828320	83	2.9	84	86	4	336	32	19	21	26	1.97
41828084--41828365	42	6.7	42	85	4	142	29	19	21	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41828268--41828505	42	5.4	41	76	16	183	24	20	23	31	1.98
41831027--41831090	12	5.4	11	80	17	51	78	1	1	18	0.92
41831014--41831099	28	3.1	28	76	15	88	77	4	1	16	0.99
41831230--41831271	10	3.9	11	82	14	52	73	4	0	21	1.01
41831228--41831278	22	2.5	20	76	14	59	74	3	0	21	0.98
41831509--41831543	17	2.0	17	88	5	52	48	2	5	42	1.41
41834355--41834381	14	1.9	14	100	0	54	74	7	3	14	1.18
41834369--41834414	17	2.6	18	83	13	60	76	6	0	17	1.00
41836531--41836572	20	2.1	20	86	8	59	40	2	0	57	1.12
41838714--41838777	33	1.9	34	87	9	96	29	4	7	57	1.47
41848444--41848514	25	2.8	25	87	4	90	25	19	18	36	1.94
41848443--41848531	25	3.6	25	82	0	88	25	17	19	37	1.94
41854745--41854872	10	13.3	10	64	17	56	29	2	2	65	1.17
41854753--41854820	17	3.9	16	74	22	57	27	2	1	67	1.13
41867112--41867150	19	2.1	19	85	9	53	38	7	5	48	1.54
41870597--41870635	20	1.9	21	89	5	62	30	15	0	53	1.42
41887082--41887147	13	5.1	13	74	7	62	34	13	9	42	1.76
41891772--41891856	9	9.4	9	83	5	109	41	21	11	25	1.87
41897442--41897480	2	19.5	2	100	0	78	48	0	51	0	1.00
41906189--41906231	22	1.9	23	90	4	70	76	6	16	0	0.99
41906931--41907000	24	2.8	25	74	26	76	42	0	7	50	1.30
41913229--41913276	22	2.2	22	82	10	55	43	31	8	16	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41917396--41917472	25	3.2	24	72	18	70	44	1	1	53	1.17
41917402--41917498	48	2.0	51	84	10	130	40	2	3	54	1.28
41920596--41920637	21	2.0	21	100	0	84	42	0	19	38	1.51
41920642--41920679	20	1.9	20	84	10	51	60	0	10	28	1.30
41923045--41923084	21	1.9	21	85	10	55	27	10	17	45	1.80
41924029--41924084	29	1.9	29	92	0	94	50	10	30	8	1.68
41928620--41928650	14	2.2	14	94	0	53	32	9	19	38	1.84
41930965--41931015	25	2.0	25	96	0	93	33	11	33	21	1.90
41937805--41937843	18	2.2	17	86	13	53	33	0	20	46	1.51
41938069--41938166	23	4.3	23	90	2	162	20	21	26	31	1.98
41938071--41938159	45	2.0	45	95	0	160	19	22	26	31	1.97
41942850--41942902	26	2.0	27	96	3	99	32	22	26	18	1.97
41944742--41944838	30	3.2	30	73	2	97	27	14	28	28	1.95
41951055--41951092	20	1.9	19	94	5	67	21	13	0	65	1.26
41951195--41951252	30	1.9	29	83	13	73	37	17	17	27	1.92
41964603--41964659	24	2.4	24	78	0	69	12	15	26	45	1.82
41964640--41964702	20	3.0	20	83	4	63	14	14	22	49	1.79
41975431--41975460	14	2.1	14	93	0	51	46	0	0	53	1.00
41981389--41981622	117	2.0	117	93	1	398	29	17	17	35	1.93
41981749--41982163	44	9.1	45	65	15	156	45	3	3	46	1.39
41981761--41982227	91	5.1	91	96	0	801	46	3	3	46	1.37
41982172--41982322	10	15.8	10	64	21	56	47	1	0	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41982261--41982314	15	3.4	16	80	19	53	46	1	0	51	1.11
41982178--41982569	54	6.8	55	67	20	196	45	2	3	47	1.34
41982257--41982339	28	2.8	29	70	12	71	43	3	0	53	1.18
41982251--41982556	122	2.5	121	90	2	474	44	2	4	48	1.37
41991160--41991202	21	2.0	22	82	13	54	16	20	25	37	1.93
41998598--41998744	41	3.6	41	87	0	204	23	22	23	31	1.99
41998592--41998744	82	1.9	82	88	0	234	22	22	22	31	1.99
42000876--42000915	20	2.0	20	90	0	62	75	7	0	17	1.03
42002057--42002166	45	2.4	45	86	0	148	22	19	18	40	1.92
42004184--42004222	18	2.2	17	86	13	53	33	0	20	46	1.51
42010747--42010773	6	4.5	6	100	0	54	29	14	0	55	1.40
42011768--42011805	18	2.1	18	85	9	51	44	0	0	55	0.99
42014269--42014314	21	2.2	21	92	0	74	39	21	21	17	1.93
42021066--42021090	9	2.8	9	100	0	50	32	36	0	32	1.58
42023222--42023265	22	1.9	23	86	9	63	65	13	2	18	1.36
42029167--42029211	11	3.9	12	77	16	51	24	31	2	42	1.67
42029167--42029219	22	2.4	21	81	15	54	26	28	3	41	1.73
42031105--42031149	11	3.9	12	77	16	51	24	31	2	42	1.67
42031105--42031157	22	2.4	21	81	15	54	26	28	3	41	1.73
42033601--42034777	22	55.0	22	84	4	1459	43	29	0	26	1.58
42033572--42033624	27	1.9	28	92	3	90	43	33	0	22	1.54
42033571--42034777	65	18.7	65	85	4	1445	43	29	0	26	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42033571--42034777	43	28.0	43	85	4	1403	43	29	0	26	1.58
42034777--42035055	114	2.4	114	96	0	513	41	8	7	42	1.63
42038174--42038579	126	3.2	126	87	3	554	29	22	16	30	1.96
42041078--42041103	10	2.6	10	100	0	52	19	19	15	46	1.85
42044014--42044129	42	2.8	42	73	15	121	43	16	22	17	1.87
42044116--42044163	20	2.4	21	86	6	64	47	16	18	16	1.82
42051567--42051615	22	2.2	22	85	7	64	26	14	28	30	1.95
42056337--42056522	93	2.0	93	98	0	363	18	28	15	37	1.91
42056954--42057013	27	2.3	26	82	2	66	41	0	1	56	1.09
42056953--42057013	26	2.3	26	77	0	68	40	0	1	57	1.08
42057848--42057899	24	2.2	24	96	3	97	26	46	7	19	1.77
42058268--42058300	15	2.2	15	100	0	66	6	27	0	66	1.15
42058493--42058742	137	1.9	132	85	5	349	14	13	14	57	1.65
42060239--42060369	65	2.0	65	98	0	253	31	14	18	35	1.91
42063339--42063400	2	31.0	2	96	0	115	48	50	1	0	1.10
42064214--42064242	5	5.8	5	100	0	58	41	0	0	58	0.98
42064478--42064542	30	2.2	30	100	0	130	24	26	6	43	1.77
42073477--42073527	26	2.0	26	92	0	84	27	15	27	29	1.96
42073736--42073766	15	2.1	14	94	5	53	19	19	12	48	1.81
42077888--42077929	20	2.1	20	86	0	57	47	0	7	45	1.30
42078693--42078718	5	5.2	5	100	0	52	42	19	19	19	1.90
42079718--42079748	9	3.4	9	90	0	53	38	22	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42084133--42084174	20	2.1	20	86	0	57	47	0	7	45	1.30
42086800--42087052	110	2.4	105	81	12	332	28	1	13	57	1.45
42092451--42092545	24	4.0	24	73	9	79	55	8	6	29	1.54
42094494--42094602	42	2.5	44	83	2	141	32	20	18	29	1.96
42094737--42095264	88	6.0	88	92	0	849	24	24	24	26	2.00
42097950--42097991	17	2.5	17	85	11	52	76	0	16	7	1.00
42103106--42103285	56	3.4	53	84	8	240	4	32	2	61	1.28
42103106--42103210	52	2.2	46	85	11	131	3	30	2	62	1.27
42103274--42103312	5	8.0	5	94	5	71	0	58	0	41	0.98
42104673--42104825	43	3.5	43	72	8	123	29	15	20	34	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153