genome.fa.s18.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  40  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13583488--13583532	23	2.0	23	82	8	56	40	31	6	22	1.80
13584502--13584620	40	3.0	39	79	4	121	19	18	22	39	1.92
13590020--13590044	3	8.3	3	100	0	50	32	0	0	68	0.90
13591143--13591168	13	2.0	13	100	0	52	30	15	23	30	1.95
13594799--13594839	21	2.0	21	90	0	64	29	21	29	19	1.98
13607345--13607392	14	3.3	14	75	11	51	27	6	18	47	1.72
13608277--13608570	75	3.9	75	84	4	369	27	18	20	32	1.96
13608302--13608572	150	1.8	150	90	1	436	27	18	21	32	1.96
13612080--13612132	25	2.1	24	80	10	61	60	1	3	33	1.26
13623539--13623576	19	2.0	19	100	0	76	42	10	10	36	1.74
13628371--13628481	43	2.6	43	81	8	111	25	19	27	27	1.99
13632862--13632950	44	2.0	44	97	0	169	29	21	20	29	1.98
13636032--13636184	43	3.6	43	90	3	220	24	18	26	30	1.98
13652141--13652188	8	6.0	8	95	0	60	8	50	0	41	1.33
13652153--13652188	2	18.0	2	94	0	63	2	50	0	47	1.15
13652135--13652187	12	4.4	12	90	0	61	9	50	0	39	1.35
13659711--13659763	25	2.2	24	89	3	79	18	24	20	35	1.95
13664934--13664993	24	2.5	24	78	7	61	68	0	3	28	1.05
13664950--13665035	16	5.1	16	70	18	59	65	0	3	31	1.10
13671645--13671670	6	4.3	6	100	0	52	84	0	0	15	0.62
13675407--13675484	34	2.3	34	86	0	111	23	10	29	37	1.88
13677406--13677450	19	2.5	17	80	13	54	35	2	13	48	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13678459--13678492	18	1.9	18	94	5	61	55	2	0	41	1.15
13678887--13679023	59	2.3	59	88	7	199	55	0	0	43	1.05
13678954--13679021	24	2.9	24	72	12	70	55	0	1	42	1.08
13679727--13679786	29	2.1	29	81	12	70	43	6	5	45	1.52
13681836--13681869	16	2.1	16	94	0	59	14	26	0	58	1.36
13698065--13698107	18	2.5	17	84	3	59	53	2	2	41	1.26
13703590--13703616	11	2.5	11	100	0	54	55	0	33	11	1.35
13705203--13705256	26	2.1	26	96	0	99	27	18	12	40	1.87
13705212--13705257	14	3.4	14	77	22	62	28	19	10	41	1.85
13706015--13706441	114	3.8	111	82	9	445	24	23	25	26	2.00
13706005--13706442	227	1.9	226	84	6	575	23	23	25	27	2.00
13706728--13706781	7	7.4	7	83	8	72	12	1	38	46	1.53
13706667--13706742	31	2.6	30	75	6	75	21	1	40	36	1.61
13706728--13706781	15	3.7	14	87	7	72	12	1	38	46	1.53
13706728--13706781	22	2.5	22	90	0	81	12	1	38	46	1.53
13707053--13707134	31	2.7	30	79	9	94	19	1	40	39	1.60
13710184--13710246	22	2.7	23	79	18	69	46	0	3	50	1.17
13710178--13710258	12	7.5	11	71	25	50	45	0	2	51	1.14
13710381--13710808	9	49.8	9	66	23	203	45	22	0	31	1.59
13710378--13710461	43	2.0	43	85	0	114	48	25	0	26	1.51
13710485--13710635	19	8.5	19	61	25	62	45	21	0	33	1.57
13710466--13710741	103	2.7	104	78	17	285	44	21	0	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13710663--13710690	13	2.2	13	100	0	56	39	25	0	35	1.56
13710451--13710771	25	12.4	26	79	16	263	44	20	0	33	1.58
13710662--13710786	59	2.2	56	84	12	157	47	20	0	31	1.56
13710676--13710808	43	3.1	43	82	10	141	46	21	1	30	1.60
13715612--13715776	66	2.5	65	85	4	215	40	18	26	13	1.89
13715761--13715804	21	2.1	21	86	0	61	34	13	45	6	1.70
13715801--13715865	21	3.1	20	72	16	60	33	13	44	7	1.73
13716289--13716380	43	2.1	43	90	4	141	32	27	18	21	1.97
13716307--13716441	43	3.2	42	77	5	103	26	27	21	24	1.99
13716536--13716579	22	2.0	22	95	0	79	43	27	20	9	1.82
13717983--13718015	17	1.9	18	88	11	52	51	9	9	30	1.64
13718038--13718117	25	3.2	24	72	15	63	50	11	8	30	1.68
13719261--13719294	17	1.9	18	94	5	61	35	11	5	47	1.65
13721176--13721292	25	4.7	25	73	4	92	21	24	19	34	1.97
13723144--13723202	24	2.5	24	77	5	66	22	23	15	38	1.92
13723297--13723361	25	2.6	25	82	4	78	21	30	20	27	1.98
13723342--13723450	49	2.2	50	80	9	125	21	30	18	30	1.97
13723372--13723449	25	3.2	24	85	3	95	21	32	15	30	1.94
13723389--13723449	25	2.4	25	91	0	104	22	32	16	27	1.96
13727136--13727389	129	2.0	130	92	2	431	42	7	7	42	1.61
13745068--13745129	25	2.5	25	82	10	74	32	0	8	59	1.26
13746774--13746825	22	2.4	22	84	9	63	46	1	1	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13746784--13746828	22	2.1	22	91	4	74	40	2	0	57	1.11
13750208--13750252	20	2.2	20	84	7	56	31	2	2	64	1.18
13750205--13750260	19	2.9	18	82	10	58	32	1	3	62	1.23
13750380--13750418	15	2.6	16	88	8	55	25	0	2	71	0.98
13751933--13751978	12	3.8	12	79	0	56	67	23	4	4	1.27
13751909--13751978	36	1.9	36	82	0	86	65	21	7	5	1.38
13752260--13752302	14	3.0	14	82	3	50	51	2	2	44	1.27
13755485--13755538	26	2.0	27	82	10	67	14	9	9	66	1.43
13765392--13765717	166	2.0	166	96	0	598	32	23	12	30	1.92
13769807--13769884	25	3.0	25	81	7	95	26	23	29	20	1.99
13769779--13769884	52	2.1	51	84	8	135	30	22	27	19	1.98
13769779--13769884	25	4.1	26	77	10	94	30	22	27	19	1.98
13770969--13771190	27	8.3	26	73	11	146	46	21	15	16	1.84
13770970--13771190	53	4.1	53	80	2	246	46	21	15	16	1.84
13770999--13771195	80	2.5	81	83	5	240	45	21	16	16	1.85
13774620--13774948	27	12.3	27	81	2	385	45	20	15	18	1.85
13783102--13783143	21	2.0	22	85	4	59	52	14	0	33	1.42
13788495--13788570	23	3.3	23	92	0	134	22	21	26	30	1.99
13800527--13800708	99	1.8	98	98	1	355	50	6	10	32	1.63
13815544--13815653	33	3.2	33	75	17	98	42	11	8	37	1.71
13817442--13817492	22	2.3	22	77	12	52	70	9	1	17	1.24
13825825--13825912	43	2.0	43	97	0	167	43	12	9	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13826651--13826722	37	1.9	38	88	2	110	15	29	0	55	1.40
13835437--13835484	10	4.9	10	76	2	53	66	0	8	25	1.19
13837934--13838014	33	2.5	31	77	11	83	34	3	1	60	1.22
13837953--13838006	12	4.8	12	73	13	51	29	3	1	64	1.21
13841576--13841604	13	2.1	14	93	6	51	34	0	0	65	0.93
13844517--13844572	24	2.3	24	78	0	58	41	17	12	28	1.86
13849888--13849931	21	2.1	21	100	0	88	54	22	4	18	1.61
13850587--13850649	19	3.6	17	76	18	58	50	0	26	22	1.49
13850790--13850920	58	2.3	58	93	2	219	27	0	45	26	1.54
13851089--13851119	9	3.4	9	90	0	53	38	22	12	25	1.90
13851713--13851754	13	3.2	13	80	13	50	30	0	0	69	0.89
13851867--13851955	46	1.9	46	97	0	169	37	12	26	23	1.90
13853923--13853952	4	7.8	4	92	7	53	76	0	0	23	0.78
13856085--13856125	22	1.9	22	95	5	75	43	9	0	46	1.36
13856266--13856435	69	2.5	69	79	9	179	37	15	4	42	1.68
13858945--13859113	67	2.5	67	81	9	184	37	17	4	41	1.68
13861208--13861247	18	2.2	19	86	4	55	40	0	2	57	1.12
13866903--13866973	35	2.0	35	91	0	115	39	11	35	14	1.81
13868575--13868626	26	2.1	24	86	10	70	28	0	1	69	0.99
13868551--13868629	26	3.0	26	71	23	67	31	0	2	65	1.06
13870165--13870199	18	1.9	18	94	0	61	28	28	2	40	1.71
13870623--13870707	29	2.9	28	71	19	75	41	0	2	56	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13870646--13870693	24	2.0	23	84	15	62	39	0	2	58	1.10
13870624--13870736	58	1.9	59	80	5	131	40	1	7	50	1.40
13873558--13874080	126	4.2	126	92	0	859	27	17	17	36	1.93
13873558--13874080	251	2.1	252	93	0	877	27	17	17	36	1.93
13874137--13874239	34	3.1	33	81	5	134	39	16	0	43	1.48
13880686--13880719	6	5.7	6	92	0	59	32	0	47	20	1.51
13882776--13882806	5	6.4	5	92	7	55	19	0	0	80	0.71
13885763--13885943	32	5.5	33	74	17	178	44	4	4	45	1.47
13885747--13885950	67	3.0	67	99	0	399	44	4	4	46	1.45
13885811--13885914	30	3.2	30	70	17	100	44	2	3	49	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153