genome.fa.s18.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  18  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6078957--6079101	23	6.3	23	86	4	177	26	8	17	46	1.78
6078955--6079135	48	3.9	46	84	5	195	27	10	18	44	1.82
6078957--6079135	23	7.7	23	83	5	171	26	10	18	44	1.82
6113655--6114670	507	2.0	507	100	0	2032	35	15	18	30	1.92
6118425--6118478	3	18.3	3	76	3	56	62	0	3	33	1.12
6118561--6118591	15	2.1	15	100	0	62	61	0	6	32	1.21
6119636--6119967	44	7.5	44	79	2	351	31	25	15	27	1.96
6119632--6119949	132	2.4	133	88	1	469	30	26	15	28	1.96
6119661--6119967	89	3.5	88	87	1	400	30	26	15	27	1.96
6135495--6135552	29	2.0	29	93	0	98	18	12	17	51	1.75
6137959--6138034	10	7.7	10	70	2	55	73	1	5	19	1.09
6137970--6138030	19	3.6	19	66	32	57	72	0	6	21	1.07
6137939--6138011	20	3.6	20	72	5	58	73	1	2	21	1.03
6137969--6138037	30	2.3	30	97	2	129	73	0	5	20	1.03
6137960--6138035	30	2.6	30	91	2	127	73	1	5	19	1.09
6142714--6142759	22	2.1	22	87	0	65	28	0	15	56	1.39
6148784--6148824	14	2.6	16	77	14	50	4	26	34	34	1.78
6154512--6154540	12	2.4	12	100	0	58	37	0	0	62	0.96
6154533--6154575	16	2.5	17	81	11	61	39	6	4	48	1.51
6154521--6154580	28	2.1	27	85	11	77	40	5	3	51	1.40
6164782--6164823	20	2.0	20	86	9	57	26	11	4	57	1.54
6168344--6168388	19	2.4	19	92	3	74	46	11	13	28	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6168624--6169084	230	2.0	230	99	0	913	31	9	9	49	1.67
6175007--6175061	25	2.2	25	86	3	74	67	5	0	27	1.12
6175684--6175772	45	2.0	45	81	16	105	57	5	2	34	1.35
6183690--6183719	14	2.1	14	93	0	51	66	6	3	23	1.30
6183701--6183745	11	4.2	11	80	2	56	71	8	0	20	1.12
6183707--6183752	22	2.2	21	85	11	60	71	13	0	15	1.14
6183707--6183761	22	2.5	22	82	2	58	72	10	0	16	1.11
6198891--6198939	25	2.0	25	95	0	89	44	12	14	28	1.81
6199337--6199375	17	2.2	19	86	13	57	43	0	0	56	0.99
6202377--6204303	963	2.0	963	100	0	3854	31	14	24	29	1.95
6208378--6208490	55	2.1	54	89	1	172	43	10	13	32	1.78
6208801--6208930	60	2.2	60	92	0	215	56	12	0	31	1.36
6209027--6209063	13	2.8	14	84	12	51	0	35	0	64	0.94
6209347--6209391	23	1.9	24	81	4	56	64	4	0	31	1.13
6225969--6226009	21	2.0	21	95	0	73	4	56	12	26	1.56
6225969--6226015	21	2.2	21	88	0	67	6	53	10	29	1.60
6248789--6248814	13	2.0	13	100	0	52	23	7	23	46	1.78
6252714--6252742	9	3.2	9	100	0	58	20	0	68	10	1.18
6253970--6254048	21	3.8	21	74	14	58	44	1	5	49	1.32
6254777--6254806	4	7.5	4	100	0	60	76	0	23	0	0.78
6254940--6254981	21	2.0	21	100	0	84	28	0	14	57	1.38
6254974--6255095	60	2.0	60	90	3	192	31	0	12	54	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6258415--6258449	17	2.1	17	94	0	61	25	31	22	20	1.98
6258443--6258565	50	2.4	51	95	1	221	18	31	22	26	1.97
6258885--6258941	30	1.9	30	82	3	71	29	22	3	43	1.70
6259606--6259637	13	2.5	13	94	0	55	31	0	12	56	1.37
6259838--6260080	50	4.8	50	89	0	351	21	30	21	26	1.98
6266794--6266870	27	2.9	27	75	11	77	27	35	20	16	1.95
6270934--6270976	19	2.4	18	85	14	54	65	0	0	34	0.93
6271389--6271430	17	2.4	17	92	4	66	33	0	7	59	1.25
6271476--6271505	15	1.9	16	93	6	53	26	0	6	66	1.16
6271799--6271861	11	5.7	11	74	12	58	57	0	1	41	1.08
6271806--6271866	32	1.9	32	86	0	86	60	0	1	37	1.07
6271857--6271889	12	2.6	13	85	9	50	78	0	0	21	0.75
6271865--6271889	6	4.2	6	100	0	50	84	0	0	16	0.63
6272218--6272279	25	2.6	23	72	23	56	48	0	3	48	1.17
6272249--6272286	18	2.1	18	90	5	58	44	0	5	50	1.24
6279983--6280015	16	2.0	17	94	5	59	27	0	0	72	0.85
6279983--6280024	17	2.4	17	88	11	59	26	0	2	71	0.98
6282235--6282273	15	2.7	14	76	7	51	58	0	0	41	0.98
6288178--6288203	13	2.0	13	100	0	52	53	0	7	38	1.30
6288482--6288643	81	2.0	80	80	5	184	46	13	6	33	1.68
6291101--6291176	27	2.9	27	98	2	145	18	26	27	27	1.98
6291127--6291519	103	3.8	103	91	0	626	19	20	28	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6292705--6295923	804	4.0	804	99	0	6276	28	15	25	31	1.96
6303725--6303766	23	1.9	21	85	9	57	33	4	0	61	1.17
6307448--6307491	18	2.4	18	84	3	61	40	2	4	52	1.34
6307579--6307626	25	1.9	25	86	0	69	68	0	0	31	0.90
6307567--6307653	30	3.0	28	77	12	86	68	0	0	31	0.89
6316488--6316538	15	3.4	15	73	10	59	45	7	21	25	1.79
6316482--6316544	30	2.1	30	96	0	117	42	6	23	26	1.78
6319001--6319063	28	2.2	29	83	8	76	60	6	0	33	1.22
6319193--6319223	16	1.9	16	93	0	53	35	6	9	48	1.62
6320027--6320106	42	2.0	40	81	13	94	41	11	1	46	1.48
6325824--6325867	20	2.3	19	84	7	54	54	0	4	40	1.21
6332948--6333065	60	2.0	60	98	0	227	41	22	7	28	1.81
6335081--6335128	22	2.3	20	85	7	60	72	20	4	2	1.11
6340915--6340961	10	4.6	10	82	17	53	72	0	4	23	1.02
6349344--6349373	7	4.3	7	100	0	60	40	0	0	60	0.97
6352965--6353027	26	2.4	27	91	2	110	41	7	1	49	1.42
6353615--6353676	19	3.3	19	79	4	81	40	9	0	50	1.35
6353623--6353682	18	3.3	18	77	13	77	38	10	0	51	1.35
6353615--6353687	37	2.0	37	97	0	137	38	12	0	49	1.41
6353704--6353748	15	2.7	17	80	16	58	42	0	11	46	1.39
6353704--6353756	18	3.1	18	73	13	58	45	0	11	43	1.40
6354033--6354094	26	2.4	26	100	0	124	53	0	4	41	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6354686--6354744	31	1.9	31	82	6	75	62	3	0	33	1.12
6354732--6354781	21	2.5	20	78	12	57	70	2	4	24	1.15
6354717--6354781	23	3.0	22	78	10	64	67	3	3	26	1.20
6357506--6357574	28	2.3	30	85	7	88	39	0	0	60	0.97
6357528--6357600	28	2.6	27	79	14	67	38	2	1	57	1.22
6358795--6360746	650	3.0	650	92	3	3104	31	20	20	27	1.97
6358966--6360921	652	3.0	652	92	3	3107	32	20	19	27	1.97
6360469--6362055	792	2.0	791	96	0	2951	35	19	15	29	1.93
6364195--6364259	16	4.0	16	66	18	53	23	0	16	60	1.36
6367088--6367139	27	1.9	27	84	7	70	17	3	9	69	1.31
6368393--6368422	14	2.1	14	93	0	51	43	0	6	50	1.28
6368310--6368532	62	3.7	62	83	5	253	48	9	7	34	1.64
6369509--6369601	24	3.7	25	79	14	93	40	1	1	56	1.13
6369545--6369599	3	20.0	3	76	23	59	38	0	0	61	0.96
6369545--6369601	8	7.0	8	96	4	105	38	0	0	61	0.96
6370548--6370680	25	5.6	25	77	10	118	22	21	16	39	1.92
6370539--6370680	50	2.9	48	80	11	148	21	20	17	40	1.92
6372856--6372903	9	5.4	9	92	2	80	45	22	8	22	1.79
6386611--6386658	18	2.7	18	93	0	87	54	25	4	16	1.60
6386611--6386666	9	6.3	9	75	4	60	53	26	3	16	1.59
6388161--6388222	31	2.0	30	93	3	106	37	12	24	24	1.90
6390211--6390370	48	3.3	48	80	6	180	47	21	21	9	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6390890--6390917	5	5.6	5	100	0	56	39	0	17	42	1.50
6393014--6393053	21	1.9	21	85	10	55	37	2	2	57	1.26
6393541--6393600	28	2.1	28	84	6	77	35	0	1	63	1.05
6394096--6394198	51	2.0	51	100	0	206	44	3	1	49	1.31
6394114--6394196	24	3.3	24	64	26	64	43	2	1	53	1.21
6395550--6395584	12	2.9	12	86	0	52	42	0	11	45	1.40
6395564--6395646	39	2.1	40	84	2	105	54	0	6	39	1.25
6395549--6395623	12	6.0	12	72	9	51	53	0	6	40	1.27
6395619--6395676	22	2.6	22	75	22	66	48	1	10	39	1.48
6400379--6400491	41	2.8	40	93	2	190	26	21	23	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153