genome.fa.s18.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  53  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17454167--17454196	7	4.3	7	100	0	60	30	16	26	26	1.97
17454345--17454435	33	2.8	33	83	3	112	43	18	21	15	1.87
17456135--17456201	28	2.4	28	89	0	98	37	14	17	29	1.91
17461763--17461791	9	3.2	9	100	0	58	44	34	0	20	1.52
17462392--17462546	45	3.4	45	89	0	238	40	21	19	18	1.91
17462403--17462573	45	4.1	39	84	8	148	38	21	20	19	1.93
17463505--17463549	9	5.1	9	82	15	58	53	2	0	44	1.13
17469520--17469569	6	8.2	6	86	4	64	48	16	18	18	1.82
17469549--17469650	45	2.3	45	82	3	125	41	18	18	21	1.91
17469860--17469943	40	2.1	40	84	0	105	42	21	4	30	1.73
17470705--17470729	4	6.2	4	100	0	50	24	0	0	76	0.80
17474406--17474434	9	3.2	9	100	0	58	44	34	0	20	1.52
17475229--17475263	10	3.6	10	88	3	54	8	8	8	74	1.23
17475570--17475614	9	5.1	9	82	15	58	53	2	0	44	1.13
17475978--17476390	27	15.3	26	84	6	384	43	18	18	19	1.88
17475978--17476390	54	7.6	54	83	5	450	43	18	18	19	1.88
17476542--17476615	25	2.9	27	82	6	73	18	22	20	37	1.94
17476570--17476668	25	3.9	26	85	6	132	17	22	20	40	1.91
17476779--17476861	28	3.0	28	85	0	94	24	24	24	27	2.00
17482420--17482547	41	3.1	41	82	0	157	21	25	16	36	1.94
17490309--17490361	21	2.5	21	84	9	63	33	22	20	22	1.97
17502086--17502143	31	1.9	31	92	3	100	39	15	15	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17513025--17513701	110	6.1	110	87	4	968	33	17	17	31	1.93
17513028--17513692	224	3.0	224	92	1	1059	33	17	17	31	1.93
17515264--17515311	23	2.1	23	100	0	96	29	16	25	29	1.97
17518675--17518765	30	3.1	30	79	7	89	62	1	3	32	1.18
17518720--17518765	20	2.4	19	85	7	58	65	0	4	30	1.12
17518821--17518871	19	2.7	19	76	11	59	70	1	1	25	1.08
17518812--17518871	10	6.2	10	75	14	63	70	1	1	26	1.07
17518735--17518871	9	14.4	9	67	18	57	63	1	6	28	1.28
17519013--17519051	20	2.0	20	85	10	53	28	0	5	66	1.12
17519078--17519146	27	2.5	27	83	9	77	36	1	1	60	1.14
17529335--17529397	29	2.1	29	88	5	90	66	0	1	31	1.01
17529354--17529418	20	3.3	20	73	14	55	61	0	4	33	1.16
17529349--17529399	20	2.5	20	78	6	59	66	0	1	31	1.03
17535726--17535817	25	3.6	25	77	9	89	18	27	20	33	1.96
17542377--17542510	66	2.0	65	85	5	180	12	27	18	41	1.87
17548003--17548227	85	2.6	85	97	2	425	32	2	14	49	1.57
17548205--17548270	9	7.6	9	78	10	66	31	0	19	48	1.49
17548174--17548261	36	2.6	34	89	8	142	32	0	18	48	1.48
17548093--17548323	121	1.8	124	90	8	378	31	2	15	51	1.57
17548330--17548356	13	2.1	13	100	0	54	37	11	0	51	1.37
17548330--17548381	14	3.8	14	87	2	61	28	13	1	55	1.49
17549175--17549220	8	5.9	8	87	5	67	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17550191--17550233	22	2.0	22	95	0	77	9	16	27	46	1.77
17550293--17550564	86	3.2	86	83	2	323	30	30	16	22	1.96
17550301--17550564	43	6.2	43	83	2	262	30	29	16	23	1.96
17552846--17552871	13	2.0	13	100	0	52	53	0	15	30	1.42
17554939--17554990	21	2.5	20	81	9	59	34	38	0	26	1.57
17554998--17555058	21	2.9	21	82	2	68	39	32	3	24	1.72
17555031--17555068	15	2.6	15	83	4	51	44	39	0	15	1.47
17555026--17555125	22	4.7	21	70	14	69	47	31	2	20	1.61
17555083--17555129	14	3.4	14	81	0	58	46	34	0	19	1.50
17555340--17555678	114	3.0	114	89	1	529	26	28	19	25	1.99
17555582--17555766	88	2.1	87	89	4	282	30	31	18	19	1.96
17555723--17555883	73	2.2	73	93	0	277	29	26	18	26	1.98
17555670--17556040	187	2.0	186	88	0	553	26	27	19	26	1.99
17555783--17555997	114	1.9	114	87	0	313	26	27	19	26	1.99
17558221--17558405	50	3.7	50	83	0	226	22	30	21	25	1.99
17563001--17563088	34	2.5	35	79	1	97	38	32	10	18	1.84
17563548--17563614	31	2.2	31	94	0	116	35	14	5	43	1.71
17568024--17568122	29	3.4	28	66	12	72	33	11	15	40	1.82
17568030--17568145	60	1.9	59	81	6	135	41	10	12	35	1.78
17573329--17573359	16	1.9	16	93	0	53	64	3	12	19	1.41
17580311--17580499	52	3.6	52	84	2	220	22	16	26	33	1.95
17580311--17580486	26	6.8	26	82	1	176	21	17	26	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17581095--17581129	13	2.8	13	91	4	54	34	0	20	45	1.51
17583102--17583218	42	2.8	42	83	11	157	21	20	29	29	1.98
17586250--17586324	36	2.1	36	100	0	150	25	18	16	40	1.91
17587024--17587060	9	4.1	9	100	0	74	45	10	10	32	1.74
17587109--17587165	30	1.9	30	92	0	96	21	40	0	38	1.53
17587275--17587334	30	2.0	31	86	3	86	20	40	0	40	1.52
17587403--17587459	19	3.1	17	74	18	53	22	29	0	47	1.52
17589427--17589454	3	9.3	3	100	0	56	64	0	35	0	0.94
17590881--17590931	17	2.9	17	71	11	50	68	7	0	23	1.15
17591104--17591169	22	3.0	22	79	0	69	57	15	21	6	1.59
17592472--17592543	28	2.8	24	70	22	74	44	6	8	40	1.61
17594184--17594236	23	2.3	23	87	6	72	43	5	1	49	1.37
17594257--17594312	24	2.4	23	85	11	78	46	1	1	50	1.22
17599000--17599024	13	1.9	13	100	0	50	32	0	8	60	1.26
17607830--17608009	84	2.1	85	96	2	335	51	16	1	31	1.52
17610429--17610458	16	1.9	15	93	6	51	66	10	0	23	1.21
17615518--17615553	18	2.0	18	88	0	54	36	2	2	58	1.27
17617768--17617811	13	3.1	14	75	18	54	47	0	0	52	1.00
17617769--17617812	16	2.9	16	71	28	51	47	0	0	52	1.00
17617769--17617819	17	3.4	17	70	27	51	47	0	0	52	1.00
17617769--17617830	29	2.1	29	84	6	79	48	0	1	50	1.10
17618636--17618665	14	2.1	15	93	6	53	56	0	13	30	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17623567--17623612	21	2.2	21	84	0	56	56	10	17	15	1.67
17625302--17625332	2	15.5	2	100	0	62	0	51	0	48	1.00
17630974--17631059	25	3.5	25	78	12	97	23	25	19	31	1.98
17635895--17635949	27	2.0	27	85	0	74	36	21	21	20	1.95
17640557--17640643	26	3.3	26	80	0	102	35	31	12	20	1.90
17643277--17643425	47	3.1	47	89	1	226	32	8	28	30	1.86
17643741--17643991	47	5.4	47	87	2	328	31	9	32	26	1.89
17644122--17644201	37	2.2	37	86	4	108	23	17	31	27	1.97
17643907--17644519	307	2.0	307	91	1	987	27	17	27	28	1.97
17644429--17644507	37	2.1	37	90	0	122	24	18	31	25	1.98
17644499--17645054	278	2.0	277	95	1	988	31	12	22	33	1.92
17647431--17647472	21	1.9	23	90	9	70	35	2	0	61	1.09
17647460--17647493	8	4.0	8	85	14	50	35	5	0	58	1.22
17647431--17647487	23	2.5	23	81	16	66	35	5	0	59	1.20
17648678--17648728	25	2.0	26	84	3	68	37	3	21	37	1.72
17652911--17652986	32	2.4	31	93	6	134	57	0	7	34	1.28
17653074--17653127	21	2.5	22	88	5	85	29	31	7	31	1.85
17654398--17654474	31	2.5	31	78	2	84	41	10	7	40	1.68
17663906--17663970	29	2.2	30	83	2	87	16	24	30	27	1.97
17663959--17664005	17	2.7	18	78	15	55	17	19	31	31	1.94
17663981--17664041	18	3.5	17	80	10	61	16	18	29	36	1.92
17663993--17664041	18	2.7	18	84	6	64	14	14	30	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17664415--17664466	3	17.3	3	100	0	104	32	0	0	67	0.91
17669171--17669200	11	2.7	11	89	0	51	56	6	10	26	1.57
17672383--17672421	20	2.0	20	85	5	53	5	10	0	84	0.76
17672424--17672483	29	2.1	29	100	0	120	46	13	15	25	1.81
17680109--17680153	12	3.8	12	77	16	58	15	15	15	53	1.74
17680107--17680153	23	2.0	24	91	4	78	17	14	17	51	1.77
17680349--17680410	12	5.2	12	75	11	56	29	14	16	40	1.88
17680349--17680418	23	3.0	24	87	4	106	31	12	15	40	1.85
17680400--17680445	23	2.0	23	83	8	58	41	6	15	36	1.73
17682855--17682892	20	1.9	20	88	0	58	31	5	15	47	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153