genome.fa.s18.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  128  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40556293--40556327	14	2.4	15	90	4	54	42	0	5	51	1.25
40561368--40561427	28	2.2	27	82	8	68	25	1	11	61	1.39
40561396--40561430	15	2.3	15	95	0	61	22	0	11	65	1.24
40567026--40567077	24	2.2	24	82	0	59	34	38	21	5	1.77
40567446--40567476	11	2.8	11	95	0	53	12	6	3	77	1.08
40573164--40573207	7	6.3	7	82	17	56	65	0	18	15	1.27
40573164--40573207	21	2.1	21	87	8	63	65	0	18	15	1.27
40574441--40575399	100	9.6	100	88	1	1431	29	21	23	25	1.99
40574441--40575399	200	4.8	200	98	0	1823	29	21	23	25	1.99
40574453--40575404	50	19.0	50	68	3	473	29	21	23	25	1.99
40575416--40575753	44	7.7	44	67	4	189	31	19	22	26	1.98
40575408--40575832	132	3.2	132	93	1	692	30	19	23	26	1.98
40575817--40575909	44	2.1	45	85	2	125	30	13	27	27	1.95
40576535--40576561	14	1.9	14	100	0	54	7	51	22	18	1.70
40576780--40576810	11	2.8	11	95	0	53	12	6	3	77	1.08
40579430--40579477	22	2.2	22	85	7	71	62	2	4	31	1.26
40581779--40581807	14	2.1	14	93	6	51	51	6	0	41	1.28
40588790--40588916	39	3.3	38	83	6	114	45	11	7	34	1.70
40588806--40588922	39	3.0	38	82	5	135	44	11	8	35	1.72
40591184--40591230	22	2.0	24	88	8	71	55	10	0	34	1.35
40591928--40591953	11	2.4	11	100	0	52	0	19	0	80	0.71
40592572--40592621	17	2.9	17	88	11	84	48	6	22	24	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40593627--40593706	31	2.7	30	83	7	101	22	16	10	51	1.74
40593653--40593721	31	2.2	31	82	10	79	27	13	10	49	1.73
40605411--40605437	8	3.4	8	100	0	54	59	0	0	40	0.98
40623312--40623368	24	2.4	24	90	0	87	47	8	5	38	1.57
40628318--40628371	26	2.1	27	82	6	67	22	5	3	68	1.26
40630305--40630514	32	6.6	32	77	5	174	37	22	20	20	1.94
40630306--40630514	64	3.3	65	78	9	196	37	22	19	20	1.94
40630292--40630514	96	2.3	96	78	9	247	38	21	18	21	1.94
40630558--40630617	27	2.2	27	80	11	70	33	23	23	20	1.97
40630686--40630791	24	4.4	24	84	0	113	47	23	5	23	1.73
40630817--40630982	27	6.1	27	75	5	147	23	19	18	38	1.93
40630817--40630982	81	2.0	81	80	6	185	23	19	18	38	1.93
40630833--40630982	54	2.8	54	82	0	192	24	18	18	39	1.92
40633893--40633982	45	2.0	45	97	0	171	38	6	17	36	1.76
40637640--40637696	19	3.1	19	82	7	64	57	5	0	36	1.21
40637670--40637719	24	2.0	24	84	7	64	48	2	2	48	1.24
40637863--40637893	16	1.9	16	93	0	53	35	6	9	48	1.62
40639664--40639708	23	2.0	22	86	4	63	62	4	2	31	1.27
40639818--40639851	12	2.8	12	90	0	59	35	0	14	50	1.44
40640004--40640056	20	2.7	20	75	0	52	67	1	0	30	1.01
40640145--40640253	40	2.6	42	82	5	132	26	23	19	30	1.98
40640057--40640341	88	3.3	88	68	13	237	24	23	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40640055--40640427	172	2.1	174	87	4	522	26	23	19	30	1.98
40640145--40640455	44	7.2	44	76	7	174	27	24	17	30	1.97
40640145--40640476	88	3.8	88	72	7	248	27	23	18	30	1.98
40640352--40640644	44	7.1	44	77	16	324	29	26	18	25	1.98
40640447--40640583	34	3.7	34	74	17	130	28	25	21	24	1.99
40640400--40640635	78	3.0	78	91	1	366	29	25	19	25	1.99
40646545--40646569	3	8.3	3	100	0	50	68	0	0	32	0.90
40648147--40648213	31	2.3	29	82	12	75	59	10	2	26	1.45
40650675--40650714	6	6.7	6	91	0	53	67	10	7	15	1.41
40651554--40651604	7	7.0	7	83	16	68	72	0	13	13	1.12
40651554--40651612	29	2.0	29	90	6	93	71	0	13	15	1.15
40651554--40651612	22	2.7	21	85	15	68	71	0	13	15	1.15
40651554--40651604	15	3.5	15	86	13	79	72	0	13	13	1.12
40651554--40651611	15	3.9	14	80	15	64	72	0	13	13	1.13
40652809--40653632	128	6.4	128	88	1	1132	33	19	23	24	1.97
40652833--40653627	385	2.1	385	88	0	1171	33	19	23	23	1.97
40653549--40653818	132	2.0	132	86	1	371	29	20	20	29	1.98
40653549--40653876	132	2.5	132	82	3	338	29	20	21	27	1.98
40655812--40655872	26	2.3	26	80	5	70	31	4	3	60	1.34
40655811--40655873	27	2.4	25	77	12	65	33	4	3	58	1.35
40668499--40669052	114	4.9	112	77	9	468	24	23	24	27	2.00
40668501--40669052	226	2.4	225	79	7	580	24	23	24	28	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40668499--40669052	228	2.4	227	77	7	579	24	23	24	27	2.00
40669338--40669391	7	7.4	7	83	8	72	12	1	38	46	1.53
40669277--40669352	31	2.6	30	75	6	75	21	1	40	36	1.61
40669338--40669391	15	3.7	14	87	7	72	12	1	38	46	1.53
40669338--40669391	22	2.5	22	90	0	81	12	1	38	46	1.53
40669663--40669744	31	2.7	30	79	9	94	19	1	40	39	1.60
40672971--40673518	9	63.8	9	64	21	189	44	21	2	32	1.63
40672968--40673051	43	2.0	43	85	0	114	48	25	0	26	1.51
40673039--40673168	62	2.0	64	82	10	160	43	21	0	33	1.58
40673131--40673158	13	2.2	13	100	0	56	39	25	0	35	1.56
40673156--40673203	25	2.0	23	88	8	69	47	20	0	31	1.50
40673130--40673254	59	2.2	56	83	12	148	47	20	0	32	1.56
40673297--40673345	19	2.6	19	83	0	62	42	20	2	34	1.64
40673373--40673400	13	2.2	13	100	0	56	39	25	0	35	1.56
40673398--40673445	25	2.0	23	88	8	69	47	20	0	31	1.50
40673372--40673496	59	2.2	56	83	12	148	47	20	0	32	1.56
40673386--40673518	43	3.1	43	80	10	132	46	21	1	30	1.60
40673318--40673496	16	11.7	16	65	23	91	46	19	1	32	1.57
40673076--40673542	242	1.9	242	100	0	934	43	20	3	32	1.68
40678913--40679075	66	2.5	66	83	4	195	39	18	27	14	1.90
40679063--40679138	21	3.6	21	70	7	64	36	14	40	7	1.75
40682965--40683032	34	2.0	35	88	8	104	36	7	11	44	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40685984--40686038	23	2.3	24	81	3	67	67	7	0	25	1.16
40686452--40686500	21	2.3	20	73	10	53	44	0	6	48	1.27
40687979--40688050	27	2.7	27	85	8	94	38	13	19	27	1.90
40692795--40692824	16	1.9	16	93	6	53	50	20	0	30	1.49
40696636--40696665	15	2.0	15	100	0	60	40	20	13	26	1.89
40699995--40700247	27	9.4	27	74	6	172	40	19	17	22	1.91
40699995--40700244	54	4.6	54	75	4	216	40	19	17	22	1.91
40700012--40700269	81	3.2	81	79	3	216	39	20	17	22	1.92
40700319--40700376	24	2.4	24	88	0	89	20	8	22	48	1.77
40700448--40700501	27	2.0	27	82	13	67	20	25	22	31	1.98
40700551--40700675	32	3.9	32	82	2	153	20	18	22	39	1.93
40700678--40700729	22	2.4	22	80	0	59	17	15	21	46	1.84
40703325--40703550	27	8.3	26	71	9	105	40	19	18	21	1.91
40703379--40703584	54	3.8	53	75	2	187	37	18	19	23	1.94
40703396--40703604	81	2.6	81	84	0	249	36	20	20	22	1.95
40703376--40703604	27	8.5	27	76	3	167	37	19	20	22	1.95
40703623--40703717	24	4.0	24	82	6	77	24	7	24	44	1.79
40703621--40703719	48	2.1	48	81	7	112	23	7	23	46	1.76
40703650--40703731	24	3.4	24	87	0	110	19	7	24	48	1.74
40703849--40704051	32	6.4	32	84	0	246	21	20	19	38	1.94
40704043--40704105	22	2.9	21	76	4	63	19	20	15	44	1.87
40707658--40707682	13	1.9	13	100	0	50	88	0	12	0	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40710207--40710245	20	1.9	21	89	5	62	33	17	7	41	1.79
40710459--40710496	20	1.9	19	85	15	51	21	5	18	55	1.62
40720049--40720100	10	5.3	10	78	19	56	26	1	1	69	1.10
40720060--40720102	17	2.4	17	92	7	68	30	0	0	69	0.88
40720049--40720105	18	3.0	18	82	17	71	29	1	1	66	1.12
40729311--40729346	16	2.2	17	90	5	56	11	52	0	36	1.37
40739506--40739542	7	5.3	7	100	0	74	13	56	0	29	1.37
40749451--40749519	16	4.3	16	80	7	77	33	15	2	47	1.61
40752312--40752351	16	2.5	17	80	19	50	35	5	0	60	1.19
40754402--40754439	17	2.2	17	86	9	51	42	0	2	55	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153