genome.fa.s18.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  57  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18583544--18583570	14	1.9	14	100	0	54	18	44	7	29	1.77
18589351--18590302	476	2.0	476	99	0	1895	29	21	19	28	1.98
18594385--18594435	21	2.4	22	76	3	59	35	3	3	56	1.36
18595421--18595461	18	2.2	19	86	4	57	63	7	2	26	1.33
18595438--18595483	19	2.3	21	85	10	62	67	6	6	19	1.36
18597124--18597175	24	2.2	25	79	10	63	69	5	9	15	1.35
18597131--18597181	24	2.2	22	83	10	66	66	5	9	17	1.40
18597224--18597288	12	5.2	12	73	12	51	72	3	4	20	1.16
18597262--18597291	16	1.9	15	93	6	51	80	0	0	20	0.72
18597220--18597289	14	5.2	13	74	8	61	72	2	4	20	1.14
18607758--18607835	38	2.1	37	97	2	147	44	20	2	32	1.65
18612363--18612573	107	2.0	107	98	0	404	31	18	17	32	1.94
18614742--18615408	114	5.9	112	79	5	540	31	18	22	27	1.97
18614799--18615506	227	3.2	224	83	5	788	32	18	22	26	1.97
18615202--18615604	208	1.9	209	87	2	587	33	17	20	28	1.96
18615865--18615987	7	17.0	7	69	15	54	18	1	39	39	1.61
18615885--18615940	23	2.4	23	93	0	94	16	0	41	42	1.48
18615885--18615951	23	2.9	23	88	4	82	17	0	40	41	1.50
18616762--18616802	21	2.0	21	95	0	73	29	29	17	24	1.97
18616950--18616982	17	1.9	17	100	0	66	18	15	42	24	1.88
18617131--18617177	22	2.1	22	96	0	85	27	8	23	40	1.83
18617484--18617755	71	3.8	71	97	0	501	26	5	18	50	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18617891--18617920	14	2.1	14	100	0	60	26	13	6	53	1.64
18623812--18623880	21	3.3	21	85	0	93	36	20	42	1	1.61
18623865--18623904	12	3.3	12	92	0	62	42	17	37	2	1.63
18624326--18624576	82	3.0	82	83	5	292	24	19	22	33	1.97
18624326--18624593	42	6.4	42	82	5	285	25	20	23	31	1.98
18624665--18624707	22	2.0	22	90	0	68	48	27	13	9	1.73
18626068--18626098	16	1.9	16	93	0	53	32	6	3	58	1.40
18626471--18626529	29	2.0	30	80	9	68	45	3	11	38	1.58
18626574--18626618	19	2.3	20	77	14	58	64	0	0	35	0.94
18626574--18626622	18	2.5	19	77	9	55	65	0	0	34	0.93
18626574--18626626	19	2.7	20	74	11	56	64	0	0	35	0.94
18628084--18628110	14	1.9	14	100	0	54	22	0	48	29	1.51
18629755--18629962	57	3.6	57	99	0	407	35	14	21	28	1.93
18631288--18631342	21	2.6	21	100	0	110	29	18	18	34	1.94
18631724--18631770	13	3.6	13	72	11	51	38	4	4	53	1.40
18631716--18631768	26	2.0	26	100	0	106	39	3	7	49	1.49
18631872--18632199	43	7.7	43	88	2	484	25	18	30	25	1.98
18631889--18632199	126	2.4	128	92	2	520	25	18	30	25	1.98
18632926--18632969	14	3.0	15	76	6	54	52	4	0	43	1.22
18633829--18633869	17	2.3	18	80	16	50	51	4	0	43	1.23
18640746--18641146	199	2.0	200	96	1	734	20	13	25	39	1.90
18642589--18642632	18	2.4	18	84	0	61	38	45	4	11	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18642673--18642715	12	3.5	12	81	6	50	67	11	2	18	1.32
18642722--18642763	9	4.7	9	87	0	66	26	9	26	38	1.87
18642731--18642768	18	2.1	18	90	0	58	28	7	23	39	1.83
18643836--18643978	48	2.9	49	74	13	132	32	21	26	18	1.97
18643854--18643978	25	5.1	25	76	13	109	32	23	26	18	1.97
18646250--18646286	9	4.1	9	92	0	65	45	13	10	29	1.77
18653223--18653400	82	2.1	83	79	7	200	20	16	26	35	1.94
18653250--18653436	41	4.5	41	72	11	130	21	16	25	36	1.94
18653243--18653398	82	1.9	82	84	6	208	22	16	23	38	1.93
18653345--18653436	42	2.2	41	82	1	103	22	17	28	31	1.97
18653523--18653569	25	2.0	24	83	8	60	57	6	10	25	1.56
18653784--18654128	110	3.1	110	100	0	690	41	6	11	41	1.66
18654579--18654675	7	12.9	7	79	14	95	18	0	49	31	1.48
18654586--18654627	16	2.7	15	89	7	66	21	0	45	33	1.52
18654579--18654677	38	2.6	38	95	1	171	19	0	48	32	1.49
18655284--18655326	20	2.2	19	88	12	61	79	0	4	16	0.90
18656461--18656485	12	2.1	12	100	0	50	24	8	8	60	1.52
18656514--18656552	17	2.4	17	87	12	55	51	2	10	35	1.50
18656740--18656779	16	2.5	16	95	0	71	50	20	0	30	1.49
18659949--18660118	66	2.6	66	87	3	227	39	17	28	15	1.89
18660482--18660812	43	7.7	43	89	3	472	20	18	32	28	1.96
18661371--18661414	22	2.0	22	82	8	54	40	0	6	52	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18664290--18664328	16	2.4	16	91	0	60	53	10	2	33	1.48
18664365--18664403	16	2.4	16	91	0	60	53	10	2	33	1.48
18664264--18664418	75	2.1	75	100	0	310	44	9	6	39	1.63
18664407--18664448	16	2.6	16	92	0	66	42	7	2	47	1.43
18664697--18664911	10	22.3	10	65	15	60	28	4	2	64	1.26
18664712--18664737	12	2.2	12	100	0	52	15	7	0	76	0.99
18664703--18664908	9	21.6	9	66	17	78	28	4	2	64	1.27
18664753--18664824	19	3.8	18	78	10	63	29	2	0	68	1.04
18664797--18664842	22	2.1	23	84	8	60	32	4	2	60	1.28
18664864--18664944	20	4.2	20	71	9	69	27	3	2	66	1.21
18664887--18664929	17	2.5	16	85	11	50	25	2	2	69	1.12
18669470--18669504	18	2.0	17	88	5	52	45	0	0	54	0.99
18669590--18669624	18	2.0	17	88	5	52	45	0	0	54	0.99
18669766--18669874	44	2.6	40	76	17	121	34	28	5	31	1.80
18669789--18669879	45	2.0	45	87	2	130	38	28	5	27	1.79
18669860--18669928	16	4.2	16	96	3	129	37	37	0	24	1.56
18669860--18669928	33	2.1	32	97	2	129	37	37	0	24	1.56
18672641--18672672	7	4.6	7	100	0	64	71	0	0	28	0.86
18676668--18676707	21	1.9	21	89	0	62	30	35	10	25	1.88
18679864--18679955	37	2.5	35	82	5	94	53	2	1	43	1.20
18679872--18679927	28	2.0	29	85	3	78	60	1	1	35	1.17
18681856--18681924	35	2.0	35	94	0	120	39	17	7	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18683213--18683339	43	3.0	42	74	13	116	27	27	20	24	1.99
18686029--18686115	25	3.5	25	75	6	77	34	20	24	20	1.97
18686102--18686173	25	2.9	25	78	12	67	36	19	26	18	1.94
18697677--18697703	5	5.4	5	100	0	54	44	0	0	55	0.99
18701356--18701409	28	2.0	27	82	10	65	40	16	11	31	1.84
18702667--18702707	9	4.6	9	81	0	55	68	4	0	26	1.10
18702667--18702707	18	2.3	18	91	0	64	68	4	0	26	1.10
18704724--18704748	13	1.9	13	100	0	50	8	0	24	68	1.16
18706402--18706563	41	4.0	41	92	1	245	29	20	27	22	1.99
18706412--18706591	41	4.4	41	88	1	173	30	20	27	22	1.98
18706403--18706591	82	2.3	82	84	3	211	30	20	26	22	1.98
18711279--18711611	167	2.0	167	86	1	468	23	17	23	35	1.95
18720529--18720619	44	2.1	44	93	0	155	31	12	8	47	1.71
18722938--18723067	50	2.6	50	87	3	183	20	30	20	29	1.97
18722938--18723048	25	4.4	25	93	0	177	18	32	19	28	1.96
18725221--18725307	44	2.0	44	90	0	138	29	11	11	47	1.75
18728653--18728712	30	2.0	31	86	3	86	40	0	40	20	1.52
18728925--18728961	9	4.1	9	92	0	65	29	10	13	45	1.77
18736142--18736172	7	4.6	7	92	8	55	0	0	16	83	0.64
18736142--18736172	13	2.3	14	94	5	55	0	0	16	83	0.64
18737502--18737602	26	3.9	26	82	7	125	34	16	6	41	1.76
18739813--18739959	40	3.7	40	90	0	222	27	21	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18739813--18739966	80	1.9	80	90	0	245	27	21	28	22	1.99
18749976--18750017	18	2.4	17	84	11	57	7	21	2	69	1.25
18759629--18759693	18	3.9	18	69	25	54	38	1	4	55	1.30
18759679--18759719	21	2.0	21	85	9	57	53	7	0	39	1.29
18760586--18760641	27	2.1	27	86	6	78	60	1	3	33	1.24
18766590--18766629	21	1.9	21	89	0	62	62	2	7	27	1.35
18774845--18774900	27	2.2	25	84	12	69	55	0	7	37	1.27
18775040--18775131	3	30.7	3	73	8	71	63	6	2	28	1.31
18775040--18775127	39	2.3	39	86	4	115	62	6	2	28	1.33
18776359--18776780	130	3.3	130	87	2	602	30	21	18	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153