genome.fa.s18.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  2  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401870--401899	3	10.0	3	100	0	60	33	0	0	66	0.92
405315--405350	18	2.0	18	88	0	54	44	0	0	55	0.99
408535--408796	39	6.7	40	87	7	337	25	22	27	24	2.00
424613--424751	66	2.1	68	86	5	194	36	19	4	39	1.71
438160--438295	52	2.6	52	88	4	202	29	11	22	36	1.90
438400--438438	16	2.6	15	88	8	53	30	12	25	30	1.93
438737--438783	17	2.8	17	86	0	58	17	10	34	38	1.84
438983--439029	17	2.9	16	81	6	58	19	2	36	42	1.63
455382--455507	22	5.8	22	73	10	107	47	19	17	15	1.83
458118--458192	12	6.0	12	71	13	53	41	4	2	52	1.34
461058--461188	51	2.6	50	85	1	163	29	29	15	25	1.96
466815--466916	41	2.5	41	91	3	161	26	19	25	28	1.99
478524--478588	25	2.5	25	76	16	60	43	4	1	50	1.32
478656--478685	16	1.9	16	93	6	53	70	3	0	26	1.03
478810--478856	9	5.4	9	77	10	53	34	2	0	63	1.06
478810--478856	17	2.8	17	80	9	60	34	2	0	63	1.06
478818--478868	25	2.1	24	82	10	59	39	3	0	56	1.18
480214--480257	22	2.0	23	90	4	72	56	4	9	29	1.50
480896--481008	19	5.8	19	81	4	145	33	15	10	39	1.82
480896--481007	40	2.8	40	87	2	165	33	15	10	40	1.82
481248--481306	21	2.8	21	100	0	118	54	0	0	45	0.99
485513--485636	59	2.1	58	93	1	212	38	8	11	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485710--485818	43	2.5	43	84	1	164	23	0	28	47	1.52
485700--485818	22	5.6	21	81	5	141	23	0	31	45	1.53
485892--485937	21	2.2	21	92	0	74	28	0	28	43	1.55
485767--486031	127	2.1	125	89	5	401	34	1	18	46	1.58
485966--486004	7	5.7	7	82	17	55	53	0	0	46	1.00
486487--486529	18	2.4	19	84	7	54	39	9	30	20	1.84
487171--487196	7	3.7	7	100	0	52	57	15	0	26	1.38
488407--488437	11	2.8	11	100	0	62	48	6	25	19	1.72
496389--496424	16	2.2	16	100	0	72	25	0	36	38	1.56
496640--496681	15	2.7	16	82	14	52	52	2	0	45	1.13
496649--496690	15	2.9	15	82	10	52	52	0	0	47	1.00
496675--496862	61	3.1	61	70	14	199	48	6	1	42	1.39
496643--496872	120	1.9	120	99	0	451	49	6	1	42	1.39
496759--496810	15	3.6	15	80	12	56	53	1	0	44	1.11
496678--496861	59	3.1	59	67	22	166	48	7	1	42	1.40
503579--503727	41	3.7	40	85	5	176	27	20	27	24	1.99
503576--503775	41	4.9	41	79	8	149	29	18	27	25	1.98
503961--504037	37	2.1	37	87	0	109	29	10	24	35	1.89
514338--514564	27	8.4	27	82	1	258	22	17	18	42	1.89
514341--514564	81	2.8	81	87	0	304	21	16	18	42	1.89
540955--541004	25	2.0	25	96	4	91	66	4	26	4	1.27
543714--543750	18	2.1	18	89	0	56	72	0	10	16	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545939--546116	27	6.6	27	83	3	205	26	15	28	29	1.96
545940--546095	82	1.9	81	88	3	233	26	15	28	29	1.96
545936--546116	82	2.2	81	83	2	229	27	15	27	29	1.96
554416--554593	27	6.6	27	83	3	205	26	15	28	29	1.96
554417--554572	82	1.9	81	88	3	233	26	15	28	29	1.96
554413--554593	82	2.2	81	83	2	229	27	15	27	29	1.96
556896--556997	51	2.0	51	94	0	177	22	17	32	27	1.96
564739--564763	13	1.9	13	100	0	50	36	0	8	56	1.29
575200--575242	22	2.0	22	86	9	61	79	6	6	6	1.07
575215--575255	17	2.4	17	83	4	55	80	2	7	9	0.99
580670--580865	40	4.9	40	81	3	225	32	16	26	25	1.96
584830--584868	20	1.9	21	89	5	62	64	5	10	20	1.44
584885--584915	14	2.2	14	100	0	62	19	19	19	41	1.90
585464--585500	11	3.3	11	92	3	56	29	2	0	67	1.04
586183--586224	21	2.0	21	86	9	59	47	2	0	50	1.14
588179--588258	30	2.7	30	84	3	99	30	13	21	35	1.92
590829--590877	6	8.2	6	76	0	53	20	0	4	75	0.96
590831--590877	18	2.6	18	86	6	69	21	0	4	74	0.99
594076--594133	30	1.9	30	85	0	80	25	37	24	12	1.90
595600--595643	19	2.4	18	84	3	52	50	6	4	38	1.50
595600--595646	18	2.5	19	86	3	60	48	6	4	40	1.48
595798--595822	3	8.3	3	100	0	50	0	0	32	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
601456--601488	14	2.3	15	89	5	50	27	12	33	27	1.92
601568--601609	7	5.7	7	83	10	57	88	11	0	0	0.53
601565--601628	15	4.3	15	86	9	87	85	10	1	1	0.72
602824--603191	88	4.2	88	88	2	508	29	25	23	21	1.99
602889--603111	44	5.1	44	65	4	162	27	25	25	21	2.00
603125--603655	87	6.1	87	92	0	875	28	23	23	24	2.00
606478--606515	3	12.7	3	100	0	76	34	0	0	65	0.93
607353--607411	19	2.8	22	71	23	54	62	1	6	28	1.30
607706--607740	3	12.0	3	87	6	54	65	0	2	31	1.07
607918--607961	22	2.0	22	90	0	70	34	0	9	56	1.31
607982--608042	17	3.4	18	72	20	56	29	0	3	67	1.07
607985--608133	18	8.2	18	71	15	85	27	2	4	65	1.24
607976--608043	18	3.8	18	72	18	61	26	0	4	69	1.07
607976--608104	27	4.9	26	71	16	88	27	2	3	66	1.19
607985--608135	9	16.6	9	68	13	62	27	2	3	65	1.24
609864--609911	20	2.4	20	82	0	60	27	18	14	39	1.90
611420--611742	70	4.7	70	76	7	268	28	24	17	30	1.97
611485--611617	63	2.1	63	91	1	214	28	24	16	30	1.96
611475--611723	133	1.8	137	82	6	326	28	24	17	29	1.97
615157--615197	21	2.0	21	85	9	57	26	0	21	51	1.48
622011--622043	17	2.0	17	88	5	50	33	12	24	30	1.91
622586--622656	37	1.9	37	97	0	133	36	14	7	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
622641--622666	13	2.0	13	100	0	52	38	15	0	46	1.46
624881--624912	7	4.6	7	100	0	64	0	75	0	25	0.81
627312--627346	14	2.5	14	90	0	52	28	11	8	51	1.67
627844--627897	25	2.2	25	82	0	63	27	31	18	22	1.97
646790--647069	85	3.3	85	85	3	375	25	16	31	26	1.97
646770--647068	43	7.0	43	84	2	363	24	16	31	27	1.97
647196--647280	19	4.5	19	77	5	91	31	21	34	12	1.91
647216--647291	38	2.0	38	92	0	125	28	22	34	14	1.93
650063--650087	13	1.9	13	100	0	50	8	28	8	56	1.57
650507--650541	18	1.9	18	100	0	70	45	0	2	51	1.16
654315--654362	19	2.4	21	80	19	59	31	16	29	22	1.96
660706--660763	22	2.5	22	76	15	55	22	3	3	70	1.17
662304--662385	41	2.0	41	100	0	164	14	21	26	36	1.93
666166--666230	33	1.9	35	90	6	107	10	0	40	49	1.38
666282--666549	95	2.8	96	83	5	319	40	2	15	41	1.62
666284--666579	95	3.1	93	74	15	257	38	2	16	41	1.63
666594--667007	126	3.3	127	91	1	636	32	19	20	28	1.97
670422--670461	21	1.9	21	85	10	55	17	17	30	35	1.93
670703--670745	18	2.4	18	88	0	59	44	9	27	18	1.80
671387--671411	7	3.6	7	100	0	50	56	16	0	28	1.41
671407--671446	7	5.7	7	100	0	80	57	15	0	27	1.38
674134--674163	15	1.9	16	93	6	53	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
675232--675268	17	2.2	17	90	0	56	43	0	2	54	1.14
682209--682235	13	2.1	13	100	0	54	14	14	0	70	1.17
687788--687814	13	2.1	13	100	0	54	14	14	0	70	1.17
693258--693295	16	2.3	17	95	4	69	42	15	7	34	1.76
706299--706334	18	1.9	19	88	5	56	50	8	0	41	1.33
709971--710104	66	2.0	66	82	2	162	12	23	19	44	1.85
714205--714488	50	5.6	50	78	4	232	28	19	27	24	1.99
714208--714488	100	2.8	102	82	5	297	28	19	27	24	1.98
720141--720334	50	3.9	50	81	1	203	28	21	26	23	1.99
720154--720334	100	1.8	100	81	2	229	28	21	27	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153