genome.fa.s18.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  116  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36337371--36337444	19	3.9	18	76	11	67	31	0	4	64	1.12
36337379--36337440	31	2.0	31	87	12	92	29	0	4	66	1.12
36337453--36337513	21	2.9	21	83	11	79	27	1	4	65	1.22
36337569--36337683	19	6.4	17	71	21	67	35	0	3	60	1.20
36337634--36337687	8	6.2	9	77	12	51	40	0	1	57	1.09
36337634--36337685	17	3.2	15	74	12	50	38	0	1	59	1.08
36337634--36337717	21	4.6	19	77	14	70	36	0	4	58	1.19
36337667--36337707	21	2.0	21	95	0	73	39	0	4	56	1.21
36339622--36339748	45	2.9	44	80	4	159	23	21	18	37	1.94
36339585--36339748	88	1.9	89	83	3	215	25	21	18	34	1.96
36341132--36341230	10	10.2	10	72	16	75	64	0	3	32	1.09
36341132--36341231	9	10.4	9	75	15	85	64	0	3	33	1.09
36341132--36341231	19	5.2	19	70	20	50	64	0	3	33	1.09
36341130--36341239	58	1.9	58	82	14	138	63	0	3	31	1.18
36341286--36341331	21	2.2	21	84	7	58	54	8	4	32	1.51
36341494--36341531	17	2.2	18	90	4	60	18	2	2	76	1.02
36341996--36342093	43	2.3	43	92	0	160	24	30	25	19	1.98
36343379--36343464	26	3.3	26	81	1	102	38	20	22	18	1.94
36343927--36343969	21	2.0	21	86	0	59	39	16	0	44	1.48
36345398--36345460	19	3.1	21	75	13	69	31	3	0	65	1.09
36345241--36345711	10	49.7	9	65	20	74	33	2	5	59	1.32
36345653--36345711	19	3.2	19	85	4	77	27	0	1	71	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36346340--36346402	9	7.0	9	75	12	51	61	1	1	34	1.15
36346422--36346538	28	3.9	30	73	10	105	64	5	1	29	1.25
36348191--36348232	17	2.5	17	84	7	59	80	0	0	19	0.70
36352173--36352206	14	2.4	14	90	0	50	44	8	17	29	1.79
36354986--36355036	25	2.0	25	96	0	93	45	15	7	31	1.75
36359416--36359653	43	5.5	43	92	1	352	31	14	19	34	1.92
36359821--36359943	45	2.8	45	82	12	141	22	20	30	26	1.98
36362453--36362512	31	1.9	31	83	6	77	40	1	20	38	1.62
36371131--36371165	18	1.9	18	88	0	52	45	5	0	48	1.26
36375828--36375862	18	1.9	18	88	0	52	45	5	0	48	1.26
36385413--36385450	9	4.0	10	80	13	53	21	0	0	78	0.74
36387359--36387387	14	2.0	15	93	6	51	41	10	6	41	1.66
36390828--36390889	17	3.6	17	79	14	65	64	0	3	32	1.09
36390908--36390937	15	2.0	15	100	0	60	20	13	26	40	1.89
36390997--36391029	16	2.1	16	94	5	59	27	0	3	69	1.03
36391119--36391173	24	2.2	24	84	12	76	61	3	0	34	1.13
36406042--36406437	44	9.0	44	91	0	639	27	14	28	29	1.96
36408132--36408182	15	3.3	15	75	22	52	27	5	0	66	1.14
36408132--36408193	30	2.0	31	84	9	83	29	6	0	64	1.18
36409960--36410043	29	2.9	29	83	0	105	26	23	28	21	1.99
36410104--36410152	23	2.2	23	82	10	57	28	14	24	32	1.94
36410297--36410341	22	2.1	21	83	4	54	44	17	15	22	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36410996--36411035	6	6.7	6	88	0	53	20	15	12	52	1.74
36411745--36411812	31	2.2	31	97	2	129	55	17	2	23	1.55
36414096--36414123	13	2.2	13	100	0	56	42	7	10	39	1.67
36415622--36415660	20	2.0	20	94	0	69	23	0	2	74	0.94
36415711--36415830	9	13.0	9	73	19	54	37	2	0	59	1.17
36415716--36415814	17	5.5	17	74	15	83	37	1	1	60	1.10
36415753--36415821	9	7.1	10	80	9	56	33	1	1	63	1.12
36415753--36415821	29	2.4	28	82	2	84	33	1	1	63	1.12
36415817--36415852	19	2.0	17	89	10	54	27	5	5	61	1.41
36415869--36415913	21	2.2	21	88	4	65	31	0	11	57	1.33
36416021--36416056	17	2.2	17	90	5	56	33	0	0	66	0.92
36415937--36416056	9	12.8	9	66	20	59	34	1	1	62	1.15
36415992--36416056	26	2.4	27	78	12	71	33	1	1	63	1.13
36416091--36416127	19	2.0	18	89	5	56	24	0	8	67	1.17
36416374--36417180	134	6.0	133	80	6	794	44	13	10	31	1.76
36416680--36416720	20	2.0	20	86	9	57	63	0	7	29	1.21
36416398--36417180	270	2.9	263	81	8	882	45	12	9	31	1.75
36417421--36417548	19	6.7	18	75	19	91	59	2	3	34	1.29
36417430--36417547	10	12.4	9	73	12	60	59	2	3	34	1.28
36417461--36417547	9	9.5	8	75	19	57	60	2	4	32	1.29
36424912--36425019	26	4.2	26	95	0	180	34	7	22	36	1.82
36439647--36439700	22	2.4	21	80	17	56	33	5	0	61	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36439750--36439795	13	3.0	15	76	23	51	30	8	0	60	1.26
36440963--36441065	53	1.9	53	100	0	206	38	8	5	46	1.59
36444071--36444155	19	4.2	21	87	4	61	36	17	10	35	1.85
36444088--36444185	19	5.2	19	90	7	155	35	15	11	37	1.83
36450867--36450894	14	2.0	14	100	0	56	21	21	21	35	1.96
36452403--36452431	9	3.2	9	100	0	58	10	0	0	89	0.48
36453530--36453560	16	1.9	16	93	0	53	48	0	51	0	1.00
36460236--36460274	16	2.5	16	95	4	71	0	10	23	66	1.22
36466367--36466405	20	2.0	20	89	0	60	25	20	15	38	1.92
36468776--36468840	31	2.0	33	91	5	107	38	15	15	30	1.88
36469862--36469907	18	2.5	17	86	13	65	26	2	0	71	0.97
36474610--36474634	11	2.3	11	100	0	50	24	0	0	76	0.80
36484488--36484527	16	2.4	17	83	8	55	50	0	12	37	1.41
36484488--36484530	17	2.5	18	77	11	54	48	0	11	39	1.40
36486899--36487005	20	5.3	20	73	10	85	41	1	14	42	1.56
36486899--36487005	40	2.7	40	76	11	119	41	1	14	42	1.56
36491499--36491536	12	3.2	12	96	0	67	39	26	7	26	1.83
36493138--36493163	13	2.0	13	100	0	52	46	0	0	53	1.00
36494124--36494204	26	3.1	26	85	0	108	22	17	23	37	1.94
36502129--36502182	27	2.0	27	100	0	108	14	22	3	59	1.51
36512741--36512773	16	2.1	15	94	5	57	42	0	0	57	0.98
36512945--36513003	30	1.9	31	93	3	102	30	8	13	47	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36512945--36513012	31	2.2	30	87	7	93	29	10	14	45	1.78
36518794--36518966	75	2.3	74	87	2	249	31	20	15	32	1.94
36518890--36519057	92	1.8	91	86	6	241	33	19	17	28	1.95
36519020--36519199	70	2.5	71	87	2	245	31	20	16	31	1.95
36527318--36527365	16	3.1	15	90	6	69	64	2	2	31	1.16
36527314--36527365	8	6.5	8	82	8	61	65	1	1	30	1.14
36527600--36527733	25	5.5	24	67	21	75	57	2	4	35	1.34
36527600--36527733	23	5.6	25	71	15	86	57	2	4	35	1.34
36527521--36527668	25	5.6	27	72	10	101	54	4	7	33	1.49
36528268--36528336	30	2.3	30	97	0	129	20	4	49	26	1.67
36531732--36531778	22	2.2	21	84	3	58	51	4	0	44	1.21
36535120--36535183	31	2.1	31	82	5	76	32	1	12	53	1.48
36543623--36543661	20	2.0	20	89	0	60	43	2	10	43	1.52
36543652--36543769	40	3.0	40	86	5	114	55	2	13	27	1.51
36543868--36543981	39	2.9	39	92	1	183	45	2	20	31	1.65
36547694--36547749	30	2.0	27	82	10	67	5	8	10	75	1.19
36547751--36547792	11	3.8	11	80	0	57	21	19	9	50	1.75
36547808--36547842	17	1.9	19	88	11	56	20	2	11	65	1.37
36553431--36553477	21	2.2	22	92	3	78	21	19	38	21	1.94
36565433--36565485	23	2.2	25	80	6	65	22	20	15	41	1.89
36577014--36577082	36	1.9	36	90	0	111	14	36	20	28	1.92
36585382--36585434	26	2.0	26	100	0	106	43	15	18	22	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36589221--36589260	11	3.6	11	82	0	53	10	17	5	67	1.37
36599241--36599281	21	2.0	21	85	0	55	63	0	17	19	1.31
36601554--36601596	3	15.0	3	88	9	63	32	0	30	37	1.58
36608056--36608125	30	2.4	29	79	9	79	57	0	1	41	1.08
36608278--36608332	10	5.6	10	79	10	60	25	1	0	72	0.94
36612780--36612850	31	2.3	29	78	19	74	61	4	1	32	1.23
36614941--36614971	14	2.1	15	94	5	55	74	0	6	19	1.03
36614978--36615022	16	3.1	15	81	15	58	80	0	15	4	0.87
36614959--36615016	20	2.8	20	84	7	71	77	1	12	8	1.06
36615879--36615970	44	2.1	44	84	8	116	20	20	23	34	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153