genome.fa.s18.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  146  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45671791--45672043	47	5.4	47	88	2	366	28	29	9	32	1.88
45680871--45680957	29	3.0	29	77	12	81	57	2	1	39	1.19
45680900--45680950	19	2.7	19	78	9	59	54	1	1	41	1.22
45680869--45680957	10	9.3	10	68	24	50	58	2	1	38	1.18
45686841--45686938	28	3.6	27	82	6	117	26	25	16	31	1.96
45689822--45689854	18	1.9	17	88	11	50	24	15	18	42	1.88
45692880--45692920	3	13.7	3	89	0	55	60	0	7	31	1.24
45694167--45694210	23	2.0	23	90	4	72	15	0	20	63	1.31
45694404--45694568	45	3.7	45	76	6	174	26	20	18	33	1.96
45694404--45694569	89	1.9	89	89	5	264	26	20	19	33	1.96
45694360--45694705	186	1.9	185	82	5	439	27	18	19	34	1.95
45694797--45695226	44	9.6	44	73	11	151	28	20	20	30	1.97
45694933--45695914	88	10.8	88	72	12	508	29	20	18	31	1.97
45694933--45695394	132	3.4	137	81	6	415	29	20	17	32	1.96
45695472--45695914	44	9.8	44	75	9	266	29	21	19	29	1.98
45695717--45695952	44	5.1	48	73	13	169	29	25	17	27	1.98
45695752--45695953	92	2.2	91	90	2	323	30	25	17	26	1.98
45696801--45696843	5	8.8	5	80	14	54	0	16	0	83	0.64
45696806--45696845	9	4.4	9	84	12	55	0	15	0	85	0.61
45696800--45696847	20	2.3	20	86	13	71	0	16	0	83	0.65
45700135--45700187	3	17.7	3	92	0	61	58	0	7	33	1.26
45704775--45704828	25	2.2	25	86	0	72	24	11	46	18	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45706014--45706242	54	4.2	54	84	1	262	38	18	18	24	1.93
45705998--45706242	27	9.0	27	79	7	210	38	19	17	25	1.93
45706350--45706414	27	2.4	27	80	9	71	20	24	20	35	1.96
45712159--45712212	25	2.2	25	86	0	72	24	11	46	18	1.81
45712328--45712374	24	2.1	21	84	11	58	31	4	40	23	1.74
45713388--45713556	27	6.2	28	85	7	188	40	19	16	23	1.91
45720294--45720341	24	2.0	24	100	0	96	25	4	20	50	1.66
45723891--45724025	68	2.0	68	91	0	216	28	11	17	43	1.82
45724387--45724541	43	3.7	43	76	7	138	29	16	26	27	1.97
45729862--45729924	13	4.8	13	84	0	72	38	23	4	33	1.76
45731589--45731654	22	3.0	22	77	4	62	18	19	21	40	1.91
45733529--45733903	176	2.1	177	82	5	456	33	14	9	42	1.79
45733571--45734038	176	2.7	176	77	7	434	33	15	10	39	1.82
45733900--45733952	26	2.0	26	100	0	106	22	15	22	39	1.91
45750229--45750286	30	1.9	31	85	3	82	39	8	18	32	1.82
45751155--45751485	27	12.3	27	81	3	337	22	17	16	43	1.88
45751152--45751485	54	6.2	54	82	2	384	22	17	17	43	1.88
45752377--45752430	25	2.2	25	89	0	81	16	46	12	24	1.82
45752386--45752436	25	2.2	23	86	10	68	15	49	15	19	1.80
45752999--45753056	29	2.0	29	93	0	98	20	10	24	44	1.82
45753058--45753095	20	1.9	20	88	0	58	26	18	18	36	1.94
45761916--45761958	17	2.4	18	81	14	54	65	0	32	2	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45766831--45767038	90	2.3	90	100	0	416	27	12	13	46	1.79
45772478--45772749	139	1.9	144	88	5	412	44	14	9	32	1.77
45776078--45776109	14	2.3	14	100	0	64	37	6	6	50	1.53
45779957--45780020	23	2.7	23	83	11	78	26	0	20	53	1.46
45784002--45784052	21	2.4	21	83	0	57	33	39	5	21	1.78
45785062--45785119	28	2.1	28	83	6	73	51	0	20	27	1.47
45789438--45789636	43	4.6	42	82	3	202	27	29	19	24	1.98
45789978--45790023	21	2.2	21	92	0	74	8	47	13	30	1.72
45790004--45790165	66	2.5	66	84	2	200	16	28	16	39	1.89
45795523--45795632	25	4.8	24	75	15	90	30	4	19	46	1.69
45795535--45795673	41	3.4	41	82	0	152	27	5	19	48	1.70
45795603--45795713	16	6.6	17	75	12	70	27	4	23	44	1.73
45795519--45795702	66	2.8	65	81	6	210	28	4	20	46	1.69
45795617--45795706	25	3.6	25	76	8	85	27	5	22	44	1.75
45795733--45795822	25	3.6	25	77	3	74	28	5	20	45	1.73
45795831--45795941	20	5.8	20	76	12	115	41	4	6	47	1.49
45795909--45796995	66	16.3	66	95	3	1982	35	3	13	48	1.58
45796699--45796809	20	5.8	20	77	12	124	40	5	6	47	1.52
45797296--45797329	15	2.3	15	100	0	68	47	5	5	41	1.52
45805319--45805354	15	2.3	16	90	4	56	36	2	0	61	1.11
45805432--45805464	16	2.1	16	100	0	66	27	6	6	60	1.44
45806121--45806355	41	5.6	41	80	7	276	31	28	20	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45806127--45806349	86	2.7	82	82	8	279	32	28	20	17	1.96
45806391--45806465	39	1.9	39	83	0	96	22	24	18	34	1.96
45813125--45813154	15	1.9	16	93	6	53	56	0	0	43	0.99
45819436--45819584	40	3.8	40	81	5	151	24	29	20	25	1.99
45819455--45819639	40	4.6	39	80	6	185	24	28	22	24	1.99
45819455--45819639	79	2.3	80	79	8	198	24	28	22	24	1.99
45820769--45820888	56	2.1	56	98	0	231	22	23	9	45	1.81
45821508--45821540	16	2.1	16	100	0	66	39	0	6	54	1.25
45821600--45821793	101	2.0	99	90	6	315	45	12	3	38	1.58
45821700--45821762	9	6.7	9	74	7	54	42	17	4	34	1.70
45821760--45821837	32	2.6	29	88	10	104	55	8	1	34	1.40
45821760--45821845	29	2.8	32	83	13	117	54	10	1	33	1.42
45821749--45821842	29	3.3	25	72	27	64	53	12	1	32	1.46
45821760--45821855	29	3.2	29	80	12	88	55	10	1	33	1.41
45821867--45821990	9	13.8	9	84	0	167	50	16	0	32	1.46
45827859--45827919	32	1.9	32	96	0	113	44	19	16	19	1.87
45827892--45828006	43	2.7	43	90	1	178	34	20	19	25	1.96
45828982--45829073	29	3.1	29	88	4	121	42	6	22	28	1.78
45833660--45833743	15	5.5	15	71	12	64	45	7	19	28	1.76
45833652--45833738	30	2.9	30	92	0	138	45	6	20	26	1.76
45833693--45833743	14	3.5	14	70	19	50	45	5	21	27	1.75
45835158--45835204	20	2.3	20	85	0	67	21	12	36	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45838475--45838535	20	3.0	20	78	4	70	49	13	1	36	1.52
45838575--45838628	20	2.7	20	82	5	65	33	14	5	46	1.68
45845664--45845807	71	2.0	72	90	1	227	25	52	0	22	1.48
45855339--45855381	20	2.2	20	83	8	52	41	18	13	25	1.88
45855349--45855422	20	3.7	20	77	12	80	36	13	18	31	1.90
45863676--45863707	13	2.3	15	89	10	50	0	43	3	53	1.16
45866758--45866796	18	2.4	17	84	16	55	28	2	0	69	1.02
45867343--45867479	40	3.4	39	76	4	123	36	21	23	18	1.95
45871098--45871237	28	5.0	28	82	5	165	22	15	9	52	1.71
45876520--45876666	41	3.5	41	88	2	195	28	21	23	25	1.99
45877379--45877403	13	1.9	13	100	0	50	16	0	16	68	1.22
45880348--45880392	3	15.0	3	95	0	81	0	31	0	68	0.89
45885555--45885597	18	2.4	18	92	3	70	11	37	32	18	1.87
45889364--45889421	28	2.1	28	86	0	80	43	18	18	18	1.89
45889972--45890190	54	4.1	53	77	5	183	27	26	24	22	2.00
45890706--45890753	19	2.5	20	81	18	59	70	4	18	6	1.25
45907834--45907876	21	2.1	20	82	4	50	53	6	2	37	1.41
45909125--45909167	22	2.0	22	90	0	68	9	23	25	41	1.84
45909997--45910048	26	2.0	27	92	3	88	50	5	0	44	1.26
45912385--45912438	28	2.0	27	85	3	72	64	0	29	5	1.16
45914461--45914499	18	2.1	19	85	4	53	12	12	2	71	1.24
45914877--45914909	6	5.5	6	100	0	66	15	0	0	84	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45915706--45915742	18	2.1	18	90	10	58	32	0	5	62	1.18
45920704--45920754	26	1.9	27	88	4	77	70	11	0	17	1.16
45920704--45920747	6	6.8	6	87	12	61	68	13	0	18	1.22
45921644--45921672	15	1.9	15	100	0	58	68	3	13	13	1.33
45921636--45921690	7	7.0	8	75	19	53	70	1	12	14	1.24
45921647--45921681	15	2.3	15	90	0	52	77	2	8	11	1.10
45923067--45923318	46	5.7	45	69	13	155	32	18	19	29	1.96
45922941--45923324	175	2.2	175	94	0	669	32	18	19	29	1.96
45923311--45924128	100	8.2	100	90	1	1230	29	24	22	23	1.99
45924721--45924750	13	2.3	13	94	0	51	10	3	0	86	0.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153