genome.fa.s18.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  147  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45925284--45925329	24	1.9	24	82	8	58	28	17	0	54	1.43
45931795--45931870	38	2.0	38	94	0	134	43	11	19	25	1.85
45935016--45935052	19	2.0	19	89	5	58	43	0	8	48	1.32
45939265--45939390	43	2.9	42	79	12	139	19	18	30	32	1.95
45941082--45941228	40	3.6	40	79	9	129	25	21	27	25	2.00
45943356--45944378	114	9.0	114	98	0	1951	31	13	14	40	1.85
45944197--45944330	67	2.0	67	95	0	241	32	12	14	40	1.84
45944700--45944724	12	2.1	12	100	0	50	40	0	8	52	1.31
45946057--45946092	16	2.2	16	90	5	54	80	0	0	19	0.71
45949065--45949100	16	2.2	16	95	0	63	27	0	33	38	1.57
45949224--45949533	150	2.0	153	90	4	491	43	4	5	47	1.46
45949467--45949508	15	2.7	16	82	14	52	52	2	0	45	1.13
45949476--45949517	15	2.9	15	82	10	52	52	0	0	47	1.00
45949586--45949637	15	3.6	15	80	12	56	53	1	0	44	1.11
45949706--45949757	15	3.6	15	80	12	56	53	1	0	44	1.11
45949470--45949882	120	3.4	120	96	1	749	50	5	2	42	1.37
45949923--45949970	26	1.9	25	84	16	64	52	2	0	45	1.12
45949878--45950106	92	2.5	92	83	8	236	47	3	3	44	1.38
45953156--45953182	11	2.5	11	100	0	54	25	0	25	48	1.52
45953271--45953797	97	5.4	97	99	0	1018	37	6	13	41	1.71
45962352--45962391	21	1.9	21	85	10	55	32	5	50	12	1.62
45978663--45978722	29	2.2	26	82	8	66	26	13	13	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45979585--45979638	29	1.9	28	85	7	74	42	20	12	24	1.87
45986690--45986757	26	2.6	26	92	0	118	22	23	30	23	1.99
45988427--45989327	448	2.0	448	99	0	1766	31	25	12	30	1.92
45994081--45994152	21	3.1	22	75	21	76	25	22	18	34	1.96
45994080--45994156	24	3.2	24	71	20	79	24	24	16	33	1.96
45994857--45994881	13	1.9	13	100	0	50	24	8	24	44	1.80
46003109--46003164	6	9.3	6	100	0	112	33	16	0	50	1.45
46004590--46004635	17	2.8	18	84	15	64	28	41	30	0	1.56
46007415--46007453	15	2.6	16	88	8	55	0	28	0	71	0.86
46007474--46007519	24	1.9	24	81	0	56	19	34	19	26	1.96
46007556--46007591	18	2.0	18	88	0	54	22	38	22	16	1.93
46007677--46007718	21	2.0	21	95	0	75	9	21	16	52	1.72
46007617--46007880	105	2.5	105	90	3	413	12	26	14	46	1.80
46007866--46007918	18	2.9	18	80	5	63	9	18	11	60	1.57
46007906--46007946	9	4.6	9	90	0	64	0	26	12	60	1.31
46008852--46008907	25	2.3	25	87	3	78	37	0	1	60	1.07
46009181--46009247	12	5.0	14	70	14	52	71	0	26	1	0.94
46009182--46009248	23	2.8	25	78	13	70	73	0	25	1	0.92
46009409--46009582	80	2.1	82	88	2	253	27	0	16	55	1.45
46009494--46009683	103	1.9	103	95	2	348	28	0	16	54	1.42
46011663--46011790	65	2.0	66	84	4	170	19	46	9	24	1.79
46011673--46011790	33	3.6	33	79	2	130	18	46	9	25	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46011965--46012119	75	2.1	75	86	2	222	25	6	13	54	1.63
46030095--46030566	103	4.6	103	95	0	811	19	19	30	30	1.97
46041020--46041062	18	2.4	18	96	0	77	46	2	0	51	1.13
46041100--46041135	18	2.0	18	88	0	54	61	8	0	30	1.26
46041584--46041640	25	2.3	25	96	0	105	52	3	3	40	1.35
46044837--46045071	79	3.0	79	100	0	470	26	30	26	16	1.97
46048785--46048850	19	3.2	21	87	6	73	37	19	7	34	1.80
46048802--46048954	19	8.2	19	87	7	224	37	15	8	38	1.77
46048802--46048954	55	2.7	56	87	8	231	37	15	8	38	1.77
46048822--46048954	36	3.6	36	91	2	221	37	14	9	39	1.77
46052777--46052916	60	2.3	60	95	0	244	27	15	25	32	1.95
46059089--46059123	17	2.0	18	88	5	54	20	8	11	60	1.57
46066911--46067006	42	2.3	42	94	0	165	28	27	9	35	1.88
46067411--46067444	17	2.1	17	88	5	52	32	17	0	50	1.47
46068270--46068305	18	2.0	18	100	0	72	55	11	5	27	1.57
46068732--46068758	12	2.2	12	100	0	54	66	7	7	18	1.40
46072151--46072539	77	5.1	77	83	1	390	44	15	16	23	1.86
46072256--46072457	37	5.3	37	72	7	143	44	16	16	22	1.86
46072151--46072512	154	2.4	154	85	2	469	44	14	16	23	1.85
46072286--46072550	37	6.8	40	72	9	154	44	15	15	24	1.85
46072286--46072559	40	7.1	39	70	8	148	44	15	15	24	1.85
46072167--46072562	154	2.6	154	82	3	458	43	15	16	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46078991--46079175	79	2.3	82	83	7	229	24	27	22	24	2.00
46078972--46079175	40	5.1	40	81	8	229	24	27	22	25	2.00
46088490--46088554	32	2.0	32	96	0	121	38	20	18	23	1.93
46089036--46089062	12	2.2	12	100	0	54	14	14	33	37	1.88
46098766--46098791	13	2.0	13	100	0	52	23	7	30	38	1.83
46099349--46099468	60	2.0	60	100	0	240	46	10	11	31	1.73
46106618--46106667	26	1.9	26	83	0	64	36	20	22	22	1.96
46115321--46115350	8	3.6	8	95	4	51	40	23	0	36	1.55
46130592--46130621	15	2.0	15	93	0	51	33	0	10	56	1.32
46131765--46131852	45	2.0	44	93	2	149	30	13	10	45	1.77
46133573--46133606	10	3.4	10	91	0	50	29	29	14	26	1.95
46138999--46139254	3	85.0	3	94	0	440	33	1	0	64	1.08
46142708--46142746	18	2.2	18	85	0	51	23	38	2	35	1.68
46143067--46143170	48	2.2	48	98	0	199	50	0	26	23	1.50
46145495--46145541	2	23.5	2	100	0	94	51	0	48	0	1.00
46149254--46150396	282	4.1	282	85	6	1546	33	18	22	25	1.97
46153139--46153179	5	8.6	5	78	10	50	21	2	2	73	1.07
46153152--46153192	18	2.2	18	87	12	57	26	2	4	65	1.25
46157402--46157467	31	2.1	31	85	0	87	42	12	13	31	1.81
46159268--46159317	25	2.0	25	92	7	84	28	12	4	56	1.54
46160618--46160740	59	2.1	58	84	6	158	49	8	16	26	1.73
46163626--46163738	58	1.9	60	82	10	144	45	1	3	49	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46167134--46167158	12	2.1	12	100	0	50	44	0	8	48	1.32
46168265--46168455	36	5.0	36	83	12	238	36	13	20	29	1.91
46168229--46168455	82	2.9	82	88	6	321	36	12	21	29	1.90
46168270--46168481	118	1.8	117	95	1	388	35	14	19	30	1.91
46175035--46175073	18	2.1	19	86	13	55	33	12	17	35	1.88
46175112--46175142	15	2.1	15	100	0	62	32	19	12	35	1.90
46177989--46178038	23	2.2	23	82	7	57	60	2	10	28	1.40
46178922--46178973	12	4.1	12	75	22	52	65	1	3	28	1.21
46178834--46179027	19	10.3	19	68	13	89	62	3	3	30	1.27
46200306--46200360	18	2.9	19	73	15	60	27	1	0	70	0.97
46201376--46201408	17	1.9	17	93	0	57	87	3	9	0	0.63
46201376--46201409	9	3.7	9	88	4	50	88	2	8	0	0.62
46205919--46205980	28	2.2	29	79	2	72	53	12	6	27	1.63
46212289--46212327	19	2.1	19	100	0	78	38	20	15	25	1.92
46213904--46214075	40	4.3	40	88	2	222	25	27	21	25	1.99
46213904--46214118	80	2.7	79	79	5	227	26	27	20	25	1.99
46214060--46214137	40	1.9	41	82	10	97	26	26	19	26	1.99
46220302--46220511	30	7.1	30	71	8	151	20	22	15	41	1.90
46220308--46220534	89	2.6	89	89	0	319	21	23	14	40	1.90
46220492--46220594	30	3.4	30	84	5	136	30	23	9	36	1.87
46220302--46220561	89	2.9	88	81	3	288	21	23	15	40	1.91
46222669--46222843	45	4.0	44	85	5	205	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46228134--46228292	43	3.7	43	75	12	166	25	16	28	29	1.97
46230407--46230673	133	2.0	133	98	0	516	30	12	20	36	1.90
46236563--46236625	31	2.0	31	100	0	126	38	12	15	33	1.86
46239754--46239894	64	2.2	63	97	1	264	35	21	19	22	1.96
46241272--46241392	43	2.9	42	79	8	129	28	16	24	29	1.97
46242887--46242918	12	2.6	13	90	9	50	50	25	6	18	1.70
46243374--46243520	42	3.4	43	77	8	147	29	25	19	25	1.98
46243374--46243530	44	3.6	42	76	8	145	30	24	18	26	1.98
46252649--46252771	65	1.9	64	85	8	171	41	6	15	36	1.73
46267979--46268015	20	1.9	20	88	5	58	40	0	8	51	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153