genome.fa.s18.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  38  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12966726--12966784	30	2.0	30	86	3	84	20	16	8	54	1.68
12974403--12974440	20	1.9	20	88	0	58	34	5	0	60	1.19
12974855--12975003	42	3.5	42	83	2	165	36	23	18	21	1.95
12974980--12975032	26	2.0	26	88	0	79	24	33	22	18	1.97
12974940--12975073	67	2.0	68	83	4	173	28	26	20	24	1.99
12981452--12981493	22	2.0	21	90	4	66	4	9	7	78	1.08
12993318--12993461	41	3.6	41	89	4	206	34	2	0	63	1.09
12993401--12993461	31	2.0	31	90	6	97	37	1	0	60	1.07
12996066--12996103	17	2.1	17	90	9	58	47	0	0	52	1.00
12996180--12996239	27	2.2	27	93	0	102	33	23	28	15	1.94
12996357--12996405	17	2.9	18	82	14	61	65	0	34	0	0.93
12996356--12996400	23	2.0	23	86	8	65	64	0	35	0	0.94
12996552--12996785	22	11.0	21	73	18	121	30	1	12	55	1.46
12996523--12996709	61	3.1	60	71	12	175	31	1	13	54	1.46
12996576--12996839	19	13.9	19	67	20	99	31	0	13	54	1.42
12996695--12996839	27	5.8	26	84	11	180	31	0	13	55	1.43
12996695--12996839	49	2.9	49	90	5	218	31	0	13	55	1.43
12996775--12996863	8	10.1	8	70	17	52	32	1	15	50	1.52
12996717--12996863	76	2.0	74	84	5	190	31	1	14	52	1.51
12997206--12997517	156	2.0	156	99	0	615	28	23	22	26	1.99
12999227--12999400	87	2.0	87	96	0	321	33	24	12	30	1.91
13001577--13001613	9	4.1	9	92	0	65	45	13	10	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13001651--13001691	21	2.0	21	85	9	57	19	34	0	46	1.50
13003771--13003825	27	2.0	27	83	13	69	40	1	0	58	1.09
13003776--13003854	40	2.0	41	89	2	124	40	6	0	53	1.26
13005795--13006430	316	2.0	316	97	0	1200	36	11	15	35	1.84
13009192--13009226	19	1.9	19	88	11	56	71	0	22	5	1.07
13022494--13022531	6	6.2	6	90	3	58	65	15	2	15	1.38
13025015--13025077	31	2.1	31	85	8	85	46	1	7	44	1.42
13026871--13026936	31	2.1	32	81	13	75	56	0	3	40	1.15
13035322--13035374	2	25.5	2	77	7	52	45	11	43	0	1.40
13035323--13035374	15	3.7	15	92	7	83	44	11	44	0	1.40
13038864--13038912	26	1.9	25	87	4	71	55	6	4	34	1.44
13039203--13039236	17	1.9	18	88	5	52	76	5	14	2	1.09
13044721--13044774	24	2.1	28	86	13	80	29	1	9	59	1.39
13045232--13045272	16	2.5	17	80	15	50	26	2	14	56	1.51
13045591--13045685	38	2.5	37	78	13	97	36	12	1	49	1.48
13048663--13048730	30	2.2	31	82	7	77	48	22	8	20	1.77
13049637--13049784	3	49.7	3	98	1	289	0	33	0	66	0.92
13071710--13071750	15	2.7	16	77	11	50	29	17	4	48	1.67
13076943--13076997	24	2.2	26	81	12	71	45	0	1	52	1.11
13077132--13077229	45	2.2	45	87	1	135	31	26	5	36	1.78
13077210--13077261	16	3.2	16	94	0	86	34	36	0	28	1.58
13082105--13082157	27	2.0	27	100	0	106	22	11	18	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13096514--13096667	42	3.7	42	81	1	184	15	20	17	46	1.84
13096497--13096686	21	9.1	21	70	3	98	15	21	18	44	1.87
13099265--13100132	437	2.0	437	98	0	1682	35	9	19	36	1.84
13102333--13102361	12	2.3	13	94	5	51	68	0	0	31	0.89
13106566--13106626	31	2.0	31	83	6	79	47	6	8	37	1.59
13108807--13108840	16	2.1	16	94	0	59	32	14	14	38	1.87
13116612--13116669	22	2.6	23	83	8	75	44	18	24	12	1.84
13116815--13116849	16	2.1	17	89	5	54	37	25	2	34	1.71
13117662--13117688	5	5.4	5	100	0	54	59	0	0	40	0.98
13118187--13118233	22	2.1	22	84	0	58	46	14	17	21	1.83
13119653--13119694	5	8.6	5	84	5	59	57	0	0	42	0.99
13119649--13119692	24	1.9	22	90	9	70	56	0	0	43	0.99
13123003--13123041	18	2.2	18	86	9	53	41	5	0	53	1.23
13123877--13123907	3	10.3	3	100	0	62	67	0	0	32	0.91
13133484--13133545	30	2.0	32	81	9	76	48	14	0	37	1.44
13139236--13139261	3	8.7	3	100	0	52	34	0	0	65	0.93
13140445--13140547	26	3.8	26	74	13	84	59	2	0	36	1.19
13140690--13140786	9	10.4	9	70	14	56	34	1	1	63	1.08
13143197--13143243	16	2.8	18	75	15	55	68	0	0	31	0.90
13143262--13143307	23	2.0	24	87	12	69	47	4	6	41	1.49
13145520--13145566	18	2.6	18	93	0	76	29	34	31	4	1.77
13146261--13146302	21	2.0	22	85	4	59	59	7	7	26	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13148308--13148366	3	19.7	3	100	0	118	67	0	0	32	0.91
13149884--13149934	21	2.3	23	80	9	63	15	3	35	45	1.65
13151740--13151765	12	2.2	12	100	0	52	34	7	15	42	1.75
13151752--13151799	19	2.4	19	86	6	69	37	10	12	39	1.77
13151757--13151822	23	3.0	23	78	12	68	37	7	15	39	1.75
13152292--13152335	17	2.6	17	85	3	63	40	11	0	47	1.39
13152414--13152461	25	2.0	25	84	12	64	31	8	0	60	1.26
13152500--13152556	30	1.9	30	89	7	89	35	3	3	57	1.33
13154605--13154925	112	2.8	111	81	7	364	22	3	16	57	1.52
13157929--13157990	32	1.9	32	86	0	88	46	6	6	40	1.55
13161161--13161194	14	2.4	14	95	0	59	52	8	0	38	1.33
13182241--13182267	3	9.0	3	100	0	54	0	33	0	66	0.92
13185026--13185118	44	2.1	45	84	11	120	38	7	4	49	1.51
13192015--13192090	29	2.6	29	80	15	93	64	0	1	34	1.02
13205305--13205350	22	2.0	22	84	12	58	43	4	15	36	1.66
13206534--13206579	22	2.2	21	85	14	60	45	26	0	28	1.54
13216599--13216629	13	2.4	13	100	0	62	19	41	25	12	1.87
13217488--13217514	13	2.1	13	100	0	54	33	14	7	44	1.73
13217641--13218218	306	1.9	300	79	6	653	35	11	10	42	1.76
13221198--13221266	31	2.2	31	92	0	111	30	17	17	34	1.93
13222420--13222486	20	3.3	20	79	8	64	16	22	20	40	1.91
13225436--13225609	41	4.2	41	91	2	269	30	23	20	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13227260--13227289	2	15.0	2	92	0	51	46	0	3	50	1.18
13226009--13227444	740	1.9	739	99	0	2701	39	16	7	37	1.76
13227993--13228044	28	1.9	26	92	7	86	46	7	0	46	1.31
13245469--13245518	25	2.0	25	100	0	100	48	8	12	32	1.69
13250585--13250656	32	2.2	32	80	4	83	50	6	11	31	1.65
13261505--13261563	25	2.4	25	97	0	109	20	10	20	49	1.77
13263810--13263855	23	2.0	23	82	0	56	19	2	2	76	1.00
13266304--13266349	3	15.3	3	100	0	92	67	0	0	32	0.91
13275711--13275777	31	2.1	33	86	5	93	41	19	7	31	1.79
13277244--13277288	22	2.0	22	100	0	90	48	4	17	28	1.66
13280118--13280147	14	2.1	14	100	0	60	26	23	13	36	1.92
13280426--13280470	23	2.0	23	95	0	81	35	17	11	35	1.86
13284215--13284501	120	2.4	119	89	3	450	44	1	5	48	1.35
13284279--13284466	61	3.1	58	68	21	136	43	2	6	47	1.43
13284447--13284481	18	2.0	17	88	5	52	45	0	0	54	0.99
13284714--13284757	16	2.8	16	89	0	61	25	31	2	40	1.68
13288549--13288610	31	2.1	29	82	17	74	32	1	3	62	1.20
13291428--13291475	25	1.9	25	82	0	60	68	4	2	25	1.18
13293997--13294037	18	2.3	18	88	12	59	36	0	19	43	1.51
13294261--13294313	23	2.3	23	93	0	97	20	20	26	32	1.98
13296415--13296514	50	2.0	50	94	0	173	36	9	21	34	1.85
13297889--13297948	11	5.5	11	84	5	59	23	26	1	48	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13297889--13297931	10	4.0	10	82	11	50	23	30	0	46	1.52
13297950--13298008	29	2.1	27	84	6	73	33	1	5	59	1.29
13299300--13299449	75	2.0	75	97	0	282	24	24	22	28	1.99
13300170--13300212	18	2.4	18	84	0	50	20	27	9	41	1.83
13304961--13305250	125	2.3	125	92	0	472	26	21	18	32	1.97
13305415--13305451	14	2.6	14	86	0	56	32	35	2	29	1.72
13307113--13307184	27	2.8	25	81	8	99	31	20	29	18	1.96
13307267--13307323	25	2.3	24	81	3	60	43	19	22	14	1.86
13307252--13307323	24	3.0	24	75	4	72	41	19	23	15	1.89
13307459--13307499	20	2.0	20	86	13	57	48	14	0	36	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153