genome.fa.s18.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  135  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42458417--42458721	56	5.7	53	89	3	379	25	29	19	25	1.98
42458467--42458721	56	4.7	56	92	2	405	25	30	18	24	1.98
42461310--42461503	50	3.8	50	83	4	217	22	28	21	27	1.99
42472043--42472221	87	2.0	88	93	1	306	38	12	10	38	1.78
42472690--42472845	45	3.5	44	80	7	163	37	26	12	23	1.91
42472767--42472855	45	2.0	45	88	0	133	38	24	10	26	1.87
42477314--42477485	79	2.2	79	84	3	220	25	21	27	25	1.99
42477261--42477483	40	5.6	39	81	8	209	25	21	27	25	1.99
42477341--42477518	79	2.2	80	80	3	191	25	21	28	24	1.99
42488032--42488058	10	2.7	10	100	0	54	55	22	0	22	1.44
42491194--42491375	49	3.7	49	76	7	197	24	25	20	29	1.99
42491194--42491534	50	6.7	50	75	8	257	24	26	20	28	1.99
42491201--42491417	99	2.2	99	100	0	434	23	25	21	29	1.99
42496718--42496753	17	2.1	18	89	5	56	13	38	30	16	1.88
42501320--42501460	50	2.7	50	82	6	147	25	19	31	23	1.98
42501362--42501493	50	2.6	50	81	0	147	26	21	29	22	1.99
42502324--42502360	19	2.1	19	85	10	51	35	0	13	51	1.41
42528829--42528873	22	2.0	22	100	0	90	40	4	22	33	1.74
42557896--42557936	21	1.9	22	90	5	66	21	29	21	26	1.99
42559287--42559438	58	2.6	58	82	1	162	38	21	15	25	1.92
42559298--42559440	29	5.0	29	78	0	135	37	20	15	26	1.93
42559330--42559442	29	3.9	29	81	9	140	38	20	16	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42567277--42567314	19	2.0	19	94	0	67	44	15	10	28	1.80
42568812--42568933	50	2.4	50	76	0	118	29	20	28	21	1.98
42569097--42569153	25	2.3	25	96	0	105	50	10	14	24	1.73
42569240--42569278	20	2.0	20	90	10	62	56	5	23	15	1.59
42570058--42570084	12	2.2	12	100	0	54	55	11	11	22	1.66
42577120--42577210	42	2.1	42	85	2	119	32	27	15	24	1.95
42577097--42577255	43	3.7	42	78	5	158	31	27	17	23	1.97
42578345--42578371	13	2.1	13	100	0	54	48	22	0	29	1.51
42582959--42583018	30	2.0	30	86	0	84	46	10	8	35	1.67
42592968--42593149	89	2.0	89	98	0	355	21	20	4	52	1.66
42606656--42606725	27	2.6	26	95	2	95	31	28	12	27	1.93
42606656--42606750	28	3.4	28	89	2	129	32	28	12	26	1.93
42614510--42614579	27	2.6	27	95	2	113	31	28	12	27	1.93
42614510--42614607	28	3.5	28	90	2	135	31	28	13	26	1.94
42620775--42620840	34	1.9	34	93	0	114	27	34	10	27	1.90
42627546--42627757	40	5.3	39	85	3	264	40	18	25	16	1.90
42627546--42627757	80	2.7	80	87	0	300	40	18	25	16	1.90
42627979--42628031	9	6.0	9	88	4	81	20	11	0	67	1.21
42627979--42628031	26	2.0	27	88	3	81	20	11	0	67	1.21
42635905--42635929	10	2.5	10	100	0	50	40	8	12	40	1.72
42637588--42637634	22	2.1	22	84	0	58	48	17	17	17	1.81
42637626--42637825	32	6.3	32	80	5	208	39	19	17	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42637639--42637828	64	3.0	64	83	1	229	38	18	17	24	1.92
42637639--42637829	96	2.0	96	84	2	249	38	18	17	24	1.92
42637866--42637918	27	2.0	27	88	7	81	32	20	26	20	1.98
42637866--42637931	27	2.4	27	82	9	73	33	21	25	19	1.97
42638012--42638113	24	4.2	24	87	0	123	43	20	8	27	1.81
42638012--42638133	24	5.1	24	81	2	120	44	18	9	28	1.80
42638152--42638217	27	2.4	27	94	0	114	27	27	12	33	1.92
42638152--42638251	27	3.7	27	85	2	103	26	22	16	36	1.94
42638181--42638268	27	3.3	27	83	0	95	27	18	13	40	1.88
42639453--42639517	33	2.0	33	100	0	130	40	15	9	35	1.79
42640964--42641163	32	6.3	32	83	0	231	37	19	20	23	1.95
42640964--42641161	96	2.1	95	86	2	272	36	19	20	23	1.95
42641157--42641213	26	2.2	26	87	0	78	33	24	24	17	1.96
42641169--42641222	26	2.1	26	85	0	72	35	20	24	20	1.96
42641335--42641425	13	7.5	13	69	14	59	48	19	7	24	1.75
42641335--42641493	24	6.6	24	83	5	196	45	19	8	26	1.78
42641514--42641588	27	2.8	27	79	0	78	21	17	20	41	1.90
42641541--42641601	27	2.3	27	85	0	77	21	14	18	45	1.84
42644701--42644962	39	6.7	40	87	7	337	25	22	27	24	2.00
42646331--42646555	112	2.0	112	100	0	450	48	14	8	29	1.72
42646988--42647144	32	4.9	32	82	6	183	37	21	17	23	1.94
42646970--42647144	64	2.7	64	85	3	219	37	20	18	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42647159--42647211	26	2.1	26	89	3	81	33	22	24	18	1.97
42647295--42647452	24	6.6	24	85	0	190	45	20	6	27	1.76
42647500--42647587	27	3.3	27	78	10	99	25	15	14	44	1.85
42648711--42648769	31	1.9	31	96	0	109	44	15	3	37	1.63
42651275--42651318	21	2.0	22	86	4	63	54	0	4	40	1.21
42662060--42662256	50	3.8	51	82	4	191	25	19	31	22	1.98
42662120--42662305	50	3.8	49	79	5	160	26	21	29	23	1.99
42665497--42665546	20	2.5	20	83	0	64	42	14	10	34	1.78
42667718--42667767	20	2.5	21	87	6	68	30	12	14	44	1.81
42669094--42669357	137	1.9	137	92	0	438	35	8	21	33	1.84
42672509--42672603	28	3.4	28	92	1	147	31	28	13	26	1.94
42672509--42672667	27	5.8	27	85	5	167	30	27	14	27	1.95
42672509--42672663	55	2.8	55	80	4	161	30	27	14	27	1.95
42675810--42675951	50	2.8	49	90	2	212	33	25	15	25	1.95
42678710--42678754	11	3.8	11	78	16	54	35	2	0	62	1.08
42678709--42678760	14	3.8	13	82	12	68	36	1	0	61	1.07
42678709--42678758	25	2.0	25	96	0	91	36	2	0	62	1.07
42678709--42678760	3	17.3	3	81	15	63	36	1	0	61	1.07
42707763--42707806	21	2.2	20	84	12	54	34	4	6	54	1.47
42712053--42712100	22	2.1	23	88	3	71	18	20	12	47	1.81
42716864--42716922	31	1.9	30	83	10	75	27	1	3	67	1.16
42716878--42716920	14	2.8	15	82	10	52	27	2	2	67	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42717720--42717762	18	2.3	19	80	15	54	44	0	13	41	1.44
42719884--42719952	20	2.8	26	73	24	78	43	5	8	42	1.59
42719947--42719995	16	3.1	17	80	14	59	38	2	4	55	1.31
42720035--42720077	21	2.0	21	86	9	59	39	2	4	53	1.34
42728643--42728683	19	2.0	20	86	9	57	46	14	14	24	1.82
42729730--42729758	14	2.1	14	100	0	58	51	13	6	27	1.66
42735094--42735122	14	2.1	14	100	0	58	51	13	6	27	1.66
42742171--42742197	11	2.5	11	100	0	54	44	25	0	29	1.54
42745900--42745963	24	2.7	24	71	20	62	57	3	3	35	1.30
42746215--42746280	15	4.7	15	71	17	52	60	1	3	34	1.21
42747608--42747955	175	2.0	175	88	1	518	22	23	25	28	2.00
42747629--42748338	88	8.2	88	77	6	635	23	23	25	27	2.00
42747629--42748329	253	2.7	252	80	5	739	22	23	25	27	2.00
42749625--42749657	14	2.3	15	89	5	50	27	30	12	30	1.92
42755408--42755447	4	9.8	4	89	5	62	72	0	2	25	0.97
42755789--42755884	34	2.9	33	80	9	88	58	4	4	33	1.36
42755821--42755911	30	3.1	28	76	16	94	59	4	2	34	1.30
42756145--42756192	18	2.7	18	87	6	62	58	0	8	33	1.28
42756144--42756227	18	4.6	17	71	16	55	60	1	4	33	1.25
42762853--42763062	27	7.8	27	79	4	210	23	16	17	42	1.88
42762853--42763062	54	3.9	54	81	3	244	23	16	17	42	1.88
42762855--42763087	27	8.6	28	80	3	196	24	16	16	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42762853--42763087	54	4.4	54	81	1	231	23	16	17	42	1.88
42762853--42763087	81	2.9	80	81	4	258	23	16	17	42	1.88
42767585--42767782	54	3.7	54	84	2	245	23	13	18	44	1.85
42767560--42767782	27	8.3	26	72	14	150	22	14	18	44	1.86
42773618--42773723	50	2.1	50	82	3	124	20	31	21	26	1.98
42779301--42779334	16	2.1	16	88	0	50	76	11	2	8	1.12
42784010--42784153	53	2.7	54	86	5	204	29	29	10	31	1.90
42794561--42794613	21	2.5	20	81	6	61	22	30	5	41	1.77
42794556--42794613	18	3.1	18	78	9	53	22	27	6	43	1.79
42796668--42796930	40	6.6	39	86	4	278	25	27	21	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153