genome.fa.s18.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  31  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10945667--10945703	14	2.6	14	86	0	56	70	2	0	27	1.01
10947898--10947958	17	3.7	16	80	4	59	29	1	0	68	0.99
10947900--10947938	16	2.4	17	86	4	53	33	0	0	66	0.92
10949420--10949512	49	1.9	49	91	2	152	63	0	3	33	1.10
10951822--10951903	24	3.4	23	75	17	69	31	23	29	15	1.95
10957884--10958076	50	3.7	50	83	6	226	26	20	27	24	1.99
10957889--10958076	100	1.8	103	85	6	265	27	19	28	24	1.99
10958325--10958363	12	3.2	12	85	0	51	51	5	23	20	1.67
10959322--10959360	19	2.0	19	90	5	60	35	2	0	61	1.10
10960730--10960792	31	2.0	31	93	0	108	36	14	20	28	1.92
10963341--10963379	18	2.2	18	100	0	78	69	10	20	0	1.17
10964268--10964403	40	3.5	39	74	10	125	24	17	26	31	1.97
10971380--10971428	13	3.4	13	75	24	53	6	57	0	36	1.24
10971393--10971436	18	2.4	18	88	7	63	4	56	0	38	1.20
10971353--10971436	37	2.3	36	79	4	87	5	53	0	40	1.25
10972735--10972792	30	1.9	30	89	0	89	39	22	12	25	1.89
10973523--10973585	31	2.0	31	96	0	117	26	25	23	23	2.00
10973939--10974005	34	1.9	35	87	3	100	44	13	8	32	1.75
10974301--10974359	29	2.0	30	93	3	102	52	13	3	30	1.57
10976516--10976582	21	3.3	19	72	17	55	38	5	1	53	1.34
10976670--10976715	21	2.2	20	84	3	56	39	2	0	58	1.10
10985905--10985993	46	1.9	46	88	4	135	30	25	8	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10995609--10995647	16	2.4	16	82	0	51	46	2	7	43	1.46
10995581--10995635	22	2.5	22	81	0	65	50	1	1	45	1.22
10995661--10996015	59	6.0	59	99	0	701	40	5	8	45	1.57
10997012--10997081	21	3.3	22	78	11	74	62	4	0	32	1.14
10997904--10997956	20	2.7	21	75	18	51	22	7	7	62	1.47
11000464--11000525	30	2.1	30	90	0	97	45	8	8	38	1.63
11004657--11004694	20	2.0	20	89	5	60	63	0	5	31	1.17
11005806--11005845	21	2.0	21	85	5	55	60	5	2	32	1.32
11009652--11009752	30	3.3	31	79	8	109	41	3	1	52	1.31
11015810--11015874	21	3.1	21	95	0	112	30	20	23	26	1.98
11023153--11023201	24	2.0	24	92	0	80	30	24	12	32	1.92
11024984--11025017	17	2.0	17	100	0	68	41	29	11	17	1.85
11039498--11039565	26	3.0	22	73	19	59	30	2	10	55	1.48
11039495--11039549	26	2.2	25	87	9	76	27	0	12	60	1.33
11039863--11039932	27	2.7	25	82	8	70	31	14	5	48	1.67
11039865--11039921	26	2.1	27	80	3	62	29	14	7	49	1.69
11047682--11047729	12	3.8	12	76	15	51	22	2	14	60	1.45
11047678--11047734	27	2.1	27	96	0	105	28	1	14	56	1.48
11047678--11047719	12	3.1	14	74	19	52	28	0	11	59	1.33
11057194--11057239	21	2.1	22	84	4	58	50	0	0	50	1.00
11058248--11058280	17	1.9	17	100	0	66	48	0	9	42	1.35
11059103--11059145	22	2.0	22	81	9	52	20	9	9	60	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11066584--11066631	23	2.0	24	88	4	71	58	2	0	39	1.10
11067704--11067762	29	2.1	28	84	9	75	35	1	13	49	1.52
11070817--11070882	33	2.0	32	94	2	114	27	16	28	25	1.96
11071702--11071747	23	2.0	23	83	8	58	21	19	23	34	1.96
11077864--11077902	17	2.3	17	86	0	51	2	20	7	69	1.26
11077905--11077954	12	4.2	12	78	19	50	0	56	0	44	0.99
11077905--11077954	18	2.8	18	84	0	64	0	56	0	44	0.99
11081007--11081045	20	2.0	20	89	0	60	48	12	10	28	1.74
11081288--11081341	18	3.0	16	86	13	54	38	1	1	57	1.20
11081303--11081341	18	2.2	17	95	4	69	41	0	0	58	0.98
11081349--11081380	8	4.0	8	100	0	64	25	0	0	75	0.81
11081503--11081557	21	2.6	21	85	8	76	27	38	7	27	1.83
11086833--11086881	25	2.0	25	95	0	89	42	24	28	4	1.73
11087864--11087896	16	2.1	16	94	0	57	75	6	15	3	1.11
11090567--11090634	32	2.1	33	81	8	77	22	8	8	60	1.54
11090879--11090938	30	2.0	31	86	3	86	51	5	6	36	1.50
11093574--11093638	30	2.2	29	81	8	76	30	27	6	35	1.81
11093581--11093638	30	1.9	30	85	0	80	31	24	6	37	1.82
11097423--11097545	61	2.0	61	93	0	210	28	14	19	37	1.91
11097700--11097744	21	2.1	21	95	0	81	24	8	28	37	1.86
11107939--11107979	20	2.0	21	85	4	57	39	0	0	60	0.96
11107938--11107979	22	2.0	21	85	4	57	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11110951--11111034	42	2.0	42	92	0	141	46	17	8	27	1.77
11110953--11111047	42	2.3	42	87	1	129	48	17	5	28	1.69
11111055--11111100	19	2.4	19	85	0	65	45	15	6	32	1.71
11127491--11127535	17	2.7	17	82	3	56	40	0	0	60	0.97
11127512--11127593	38	2.2	37	93	4	137	32	2	0	64	1.07
11127566--11127605	21	1.9	21	89	0	62	37	2	0	60	1.11
11127565--11127623	22	2.8	21	80	14	59	40	1	3	54	1.27
11132101--11132252	57	2.6	61	77	6	161	26	9	0	63	1.25
11132338--11132383	23	2.0	23	83	8	58	23	13	2	60	1.43
11133013--11133046	17	1.9	18	88	5	52	44	2	2	50	1.32
11135081--11135136	21	2.8	20	79	17	62	55	1	0	42	1.10
11136227--11136273	24	2.0	24	91	0	76	21	29	17	31	1.96
11136603--11136643	12	3.4	12	93	0	73	68	14	0	17	1.22
11136590--11136643	18	2.9	18	91	5	81	68	11	0	20	1.19
11136683--11136716	9	3.8	9	92	0	50	26	11	26	35	1.91
11136683--11136720	18	2.1	18	95	0	67	28	10	26	34	1.90
11137323--11137378	28	2.0	28	96	0	103	19	25	10	44	1.83
11142621--11142702	31	2.7	31	92	1	139	24	39	0	36	1.56
11142757--11142808	27	1.9	27	92	7	88	23	38	0	38	1.55
11148449--11148737	42	7.6	40	71	19	242	21	19	27	31	1.97
11148493--11148775	33	7.7	34	72	19	214	20	21	27	30	1.98
11148451--11148774	75	4.3	75	96	0	578	21	20	27	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11152965--11153003	11	3.7	11	83	13	55	28	2	0	69	1.02
11152965--11153002	20	1.9	20	94	0	67	28	2	0	68	1.03
11152968--11153009	10	4.2	10	79	11	50	26	2	2	69	1.13
11153061--11153172	20	5.7	20	64	24	60	31	1	2	64	1.18
11153088--11153245	26	6.1	24	66	22	61	32	1	4	61	1.27
11153055--11153228	80	2.2	80	96	2	323	31	1	3	63	1.21
11153151--11153191	20	2.2	20	82	8	50	34	2	4	58	1.32
11153187--11153219	11	3.3	10	84	16	50	27	0	3	69	1.03
11156063--11156173	40	2.8	40	86	4	143	29	22	22	25	1.99
11156101--11156325	44	5.2	44	70	11	117	26	23	21	28	1.99
11156313--11156797	89	5.5	88	81	3	413	24	22	23	28	1.99
11156313--11156617	44	6.9	43	74	9	220	24	22	23	29	1.99
11156605--11157413	88	9.2	88	90	0	1222	24	21	25	28	1.99
11158592--11158616	10	2.5	10	100	0	50	8	8	0	84	0.79
11159434--11159483	11	4.5	11	92	5	82	4	0	8	88	0.64
11159434--11159483	23	2.2	23	92	3	84	4	0	8	88	0.64
11163645--11163692	13	3.7	13	78	8	53	64	6	0	29	1.18
11166703--11166734	12	2.8	12	95	4	57	25	0	6	68	1.12
11167081--11167117	9	4.1	9	92	0	65	45	13	10	29	1.77
11169967--11170005	5	7.8	5	100	0	78	41	0	0	58	0.98
11170969--11171071	25	4.2	25	85	3	131	15	22	21	40	1.90
11170969--11171101	50	2.8	48	82	10	148	16	22	20	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11171015--11171095	22	3.5	22	80	11	92	14	25	19	39	1.90
11180532--11180617	44	2.0	44	97	0	163	45	12	13	27	1.81
11182558--11182594	17	2.2	17	100	0	74	24	16	21	37	1.93
11183737--11184291	44	12.6	44	80	3	562	32	15	19	31	1.93
11183748--11184258	177	2.9	177	84	1	682	33	14	20	31	1.93
11185043--11185102	13	4.7	13	74	17	63	46	1	1	50	1.21
11192245--11192300	29	1.9	29	88	0	85	51	8	7	32	1.60
11192733--11192769	16	2.3	16	90	0	56	27	13	2	56	1.50
11195556--11195670	33	3.5	33	72	8	81	26	24	16	33	1.96
11205311--11205752	18	24.6	18	69	19	110	44	10	11	33	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153