genome.fa.s18.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  124  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39042146--39042298	29	5.3	29	75	14	129	25	15	22	36	1.93
39042146--39042298	58	2.7	58	80	9	188	25	15	22	36	1.93
39043251--39043291	13	2.8	15	85	10	50	58	0	0	41	0.98
39043251--39043291	15	2.9	15	82	17	52	58	0	0	41	0.98
39043831--39043868	14	2.7	14	91	0	58	31	18	10	39	1.85
39049417--39049528	25	4.6	23	78	10	89	26	18	25	28	1.98
39051539--39051721	73	2.5	73	80	3	188	37	27	14	20	1.92
39051930--39051958	10	3.0	10	95	5	51	37	10	0	51	1.36
39064866--39064932	29	2.3	29	84	0	98	29	20	14	34	1.93
39068326--39068388	32	2.0	32	90	3	101	19	0	23	57	1.41
39068956--39069036	40	2.0	40	100	0	162	32	7	18	41	1.78
39085988--39086099	41	2.7	42	80	4	138	22	20	29	27	1.98
39088385--39088424	16	2.5	16	95	0	71	37	7	27	27	1.84
39088406--39088498	44	2.1	44	90	6	143	34	4	24	36	1.75
39088749--39088788	15	2.8	13	82	17	53	65	2	0	32	1.06
39091017--39091044	2	14.0	2	100	0	56	50	0	0	50	1.00
39091798--39091975	27	6.6	27	83	3	205	26	15	28	29	1.96
39091799--39091954	82	1.9	81	88	3	233	26	15	28	29	1.96
39091795--39091975	82	2.2	81	83	2	229	27	15	27	29	1.96
39094427--39094497	28	2.5	28	95	0	133	35	7	36	21	1.80
39098267--39098298	6	5.3	6	100	0	64	84	0	0	15	0.63
39098844--39098930	41	2.2	40	85	6	113	34	1	4	59	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39101336--39101387	27	1.9	27	88	0	77	25	38	19	17	1.93
39107765--39107817	26	2.0	26	82	13	65	66	15	1	16	1.35
39110167--39110204	19	2.0	20	84	5	51	15	5	5	73	1.19
39110167--39110204	20	1.9	20	84	10	51	15	5	5	73	1.19
39110634--39110674	21	2.0	21	85	0	55	43	4	26	24	1.74
39111401--39111449	20	2.5	20	86	0	62	57	4	6	32	1.42
39112001--39112055	25	2.2	25	83	6	67	63	1	0	34	1.05
39114796--39114862	27	2.5	27	82	4	73	35	17	20	25	1.95
39115064--39115152	27	3.3	27	79	0	88	40	13	22	23	1.89
39116783--39116871	31	2.8	32	75	11	85	20	25	13	40	1.89
39116820--39116878	31	1.9	31	85	0	82	25	27	10	37	1.88
39118244--39118466	79	2.8	78	82	9	265	24	27	22	25	2.00
39118244--39118466	39	5.7	40	86	8	266	24	27	22	25	2.00
39123274--39123509	50	4.6	50	87	3	310	26	19	30	24	1.98
39123275--39123566	150	1.9	153	81	5	358	26	19	29	23	1.98
39123331--39123566	100	2.4	100	83	1	285	26	20	30	23	1.98
39129360--39129754	150	2.6	150	87	2	517	25	21	31	21	1.98
39129308--39129648	50	6.7	50	94	2	547	25	22	31	20	1.98
39131554--39131792	50	4.8	50	97	0	442	24	23	33	19	1.97
39131554--39131898	150	2.3	149	84	2	424	25	21	31	21	1.98
39134513--39134556	22	2.0	22	90	0	70	40	6	11	40	1.68
39138558--39138594	19	1.9	19	88	0	56	16	13	16	54	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39146347--39146384	20	1.9	20	100	0	76	26	7	21	44	1.79
39147155--39147240	46	1.9	44	85	4	118	24	19	22	33	1.97
39152019--39152108	2	45.0	2	97	0	171	50	48	0	1	1.08
39153168--39153209	9	4.7	9	77	11	50	52	0	2	45	1.13
39153546--39153905	180	2.0	179	97	0	684	31	14	23	30	1.94
39162207--39162257	23	2.2	23	82	6	68	29	0	9	60	1.28
39162214--39162262	23	2.3	22	82	10	66	30	0	12	57	1.36
39165767--39165797	16	1.9	16	93	0	53	83	0	0	16	0.64
39165769--39165800	15	2.1	15	94	0	55	84	0	0	15	0.63
39165775--39165808	18	1.9	17	88	5	50	76	0	0	23	0.79
39167023--39167063	16	2.6	16	96	0	73	53	9	26	9	1.65
39168811--39168840	11	2.7	11	100	0	60	90	10	0	0	0.47
39168827--39168886	32	1.9	31	82	3	75	75	3	13	8	1.16
39179239--39179331	45	2.1	45	93	0	159	44	9	27	18	1.81
39180996--39181030	16	2.2	16	89	0	52	40	0	2	57	1.14
39181118--39181174	15	3.5	15	71	17	51	49	1	1	47	1.22
39183522--39183583	26	2.4	26	94	0	106	33	12	14	38	1.84
39193199--39193238	12	3.5	12	93	6	66	40	52	0	7	1.30
39195342--39195382	7	5.9	7	94	0	73	14	9	0	75	1.04
39195342--39195383	21	2.0	21	100	0	84	14	9	0	76	1.02
39196993--39197044	25	2.1	25	88	0	77	34	19	9	36	1.84
39197834--39197929	46	2.1	46	96	1	176	48	13	15	21	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39204982--39205166	101	1.8	102	91	3	311	23	17	28	30	1.97
39204979--39205161	51	3.6	49	83	5	224	22	18	28	30	1.97
39205088--39205168	26	3.2	26	62	22	62	23	13	29	33	1.93
39204984--39205174	102	1.9	100	90	3	276	24	17	28	29	1.97
39205170--39205268	46	2.2	43	82	8	117	23	19	25	32	1.97
39205392--39205423	16	2.0	16	93	0	55	59	0	15	25	1.36
39208442--39208488	19	2.6	18	87	12	69	23	4	2	70	1.16
39208439--39208499	19	3.2	20	81	11	65	26	3	3	67	1.22
39213823--39213875	26	2.0	27	88	3	81	32	24	20	22	1.98
39216303--39216864	279	2.0	279	100	0	1124	33	12	12	42	1.80
39217844--39217937	38	2.5	37	86	3	134	30	23	12	32	1.92
39220778--39220844	27	2.5	28	80	7	84	44	19	16	19	1.87
39222874--39222922	18	2.6	18	77	6	53	53	6	22	18	1.66
39238076--39238160	25	3.3	26	76	16	79	54	7	7	31	1.54
39238163--39238206	14	3.1	14	83	6	52	45	0	2	52	1.13
39238161--39238223	23	2.7	23	79	16	60	41	0	3	55	1.16
39241210--39241270	27	2.2	28	82	2	79	22	1	21	54	1.54
39241457--39241497	21	2.0	21	85	0	55	34	9	4	51	1.56
39241665--39241694	7	4.3	7	100	0	60	53	0	0	46	1.00
39249812--39249911	50	2.0	50	96	0	182	33	17	9	41	1.80
39250399--39250626	40	5.7	40	86	2	307	26	28	21	24	1.99
39255169--39255369	100	2.0	100	100	0	402	38	19	10	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39256489--39256626	49	2.8	50	80	6	154	26	23	18	30	1.98
39256546--39256655	50	2.2	49	79	9	116	21	28	22	27	1.99
39265198--39265331	50	2.7	50	82	0	160	23	29	21	25	1.99
39268472--39268508	18	2.0	19	89	5	58	51	0	43	5	1.24
39276061--39276089	14	2.1	14	100	0	58	37	20	13	27	1.91
39282463--39282499	18	2.0	19	89	5	58	56	0	37	5	1.22
39287315--39287380	25	2.6	26	78	4	82	30	18	22	28	1.97
39296804--39296855	10	5.1	10	84	11	52	59	7	0	32	1.26
39298382--39298729	181	1.9	181	95	0	624	35	15	17	31	1.92
39301293--39301466	29	5.9	29	70	14	90	39	15	27	18	1.91
39301403--39301479	29	2.6	30	80	14	95	41	11	28	18	1.85
39301469--39301542	30	2.5	30	82	8	80	36	8	27	28	1.85
39315065--39315185	40	3.0	40	87	2	154	26	18	28	27	1.98
39315082--39315186	40	2.6	40	90	0	156	28	20	28	22	1.98
39320340--39320527	59	3.2	59	77	10	168	37	12	26	22	1.90
39320312--39320527	29	7.3	30	76	11	144	37	12	26	23	1.90
39336201--39336228	6	4.7	6	100	0	56	17	0	0	82	0.68
39336985--39337039	24	2.3	24	84	6	67	32	3	7	56	1.44
39337883--39337943	25	2.4	28	81	15	78	40	14	0	44	1.46
39339726--39339797	27	2.7	27	82	2	92	34	18	15	31	1.92
39347330--39347411	27	3.1	26	80	3	85	31	18	14	35	1.91
39351113--39351161	20	2.5	20	86	6	64	34	20	34	10	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39366577--39367610	528	2.0	529	91	0	1705	28	25	16	29	1.97
39372488--39372530	17	2.5	17	82	14	52	13	6	9	69	1.35
39380334--39380395	31	2.0	31	96	0	115	30	9	17	41	1.82
39386503--39386596	31	3.0	31	96	3	179	31	9	15	42	1.80
39388251--39388342	46	2.0	46	100	0	184	43	15	26	15	1.85
39393108--39393348	50	4.9	49	79	3	214	28	19	28	23	1.98
39393111--39393299	100	1.9	100	83	0	243	26	20	29	22	1.99
39393218--39393338	49	2.4	49	80	9	138	31	18	24	25	1.97
39397114--39397164	21	2.4	21	83	0	75	35	9	31	23	1.87
39397128--39397169	21	2.2	19	83	12	50	47	4	28	19	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153