genome.fa.s18.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  13  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4327265--4327345	40	2.0	40	92	7	137	32	23	19	24	1.98
4332953--4332985	13	2.4	14	90	5	50	30	3	0	66	1.06
4334139--4334180	23	1.9	21	85	9	57	54	7	0	38	1.28
4334015--4334184	81	2.1	81	78	10	179	50	4	1	44	1.31
4336674--4336713	11	3.6	11	79	0	53	20	20	7	52	1.70
4336751--4336812	30	2.1	30	90	0	97	27	6	9	56	1.56
4348527--4348551	6	4.2	6	100	0	50	16	32	0	52	1.44
4360385--4360438	21	2.7	19	72	13	54	40	0	0	59	0.98
4360884--4360957	29	2.5	30	73	18	73	45	12	6	35	1.68
4367895--4367924	5	6.0	5	100	0	60	40	0	0	60	0.97
4372766--4372790	6	4.2	6	100	0	50	48	0	0	52	1.00
4377228--4377272	19	2.4	19	77	3	56	6	8	20	64	1.44
4382522--4382552	15	2.0	15	93	6	53	58	0	19	22	1.40
4385322--4385395	27	2.7	27	89	0	112	31	22	31	14	1.94
4385470--4385539	19	3.7	19	82	3	97	37	10	0	52	1.35
4385475--4385545	37	1.9	37	100	0	142	39	11	0	49	1.39
4385749--4385787	19	2.1	19	85	4	53	35	7	0	56	1.28
4386027--4386137	19	6.1	19	70	6	95	53	0	8	37	1.37
4386022--4386129	37	2.9	37	95	0	189	50	0	9	38	1.41
4386331--4386396	29	2.4	27	87	5	96	51	1	6	40	1.36
4386331--4386395	28	2.3	30	84	12	93	52	1	6	40	1.36
4396636--4396679	16	2.8	16	82	6	54	31	6	9	52	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4398082--4398125	13	3.6	12	82	14	54	63	0	0	36	0.95
4398082--4398125	6	7.2	6	80	14	54	63	0	0	36	0.95
4398390--4398432	21	2.0	21	91	8	70	58	0	9	32	1.30
4399933--4400211	50	5.6	50	73	3	256	26	24	20	29	1.99
4399900--4400222	100	3.2	99	90	2	470	26	23	20	29	1.99
4402246--4402294	21	2.3	22	86	10	66	14	16	0	69	1.19
4402246--4402306	7	8.3	7	73	22	54	14	16	0	68	1.21
4402780--4402831	18	2.8	17	80	13	59	0	9	9	80	0.90
4402781--4402825	21	2.3	19	84	7	54	0	8	8	82	0.85
4402898--4402931	14	2.4	14	90	0	50	35	29	5	29	1.81
4406861--4406933	18	3.9	19	72	15	64	61	1	1	35	1.13
4406903--4406981	29	2.8	28	78	5	86	56	1	8	32	1.38
4419122--4419179	24	2.4	24	81	13	66	32	5	3	58	1.37
4423827--4423886	3	20.0	3	100	0	120	66	0	33	0	0.92
4439066--4439128	30	2.1	30	96	0	117	23	3	15	57	1.53
4441269--4441345	38	2.0	38	100	0	154	41	23	7	27	1.81
4443124--4443157	6	5.7	6	85	0	50	70	0	14	14	1.17
4443123--4443157	18	1.9	18	94	0	61	71	0	14	14	1.15
4463983--4464094	24	4.7	24	83	2	127	47	4	25	23	1.70
4464836--4464893	9	6.4	9	81	0	71	43	20	8	27	1.81
4464836--4464893	18	3.2	18	90	0	80	43	20	8	27	1.81
4464836--4464893	27	2.1	27	90	0	89	43	20	8	27	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4468367--4468407	20	2.0	20	95	0	73	31	9	0	58	1.31
4468465--4468535	27	2.6	27	86	8	92	19	25	32	22	1.98
4469587--4469770	92	2.0	92	97	0	350	31	16	28	22	1.96
4470009--4471876	934	2.0	934	99	0	3718	29	18	24	28	1.98
4471336--4472859	762	2.0	762	100	0	3048	29	17	20	31	1.96
4473483--4473614	21	6.4	21	71	16	98	0	31	0	68	0.89
4473487--4473623	18	7.1	18	71	22	68	0	29	0	70	0.88
4473459--4473539	34	2.5	31	77	16	76	0	33	0	66	0.92
4473519--4473656	4	34.0	4	73	20	101	0	29	0	70	0.88
4473485--4473656	40	4.3	42	79	16	195	0	30	0	69	0.89
4473484--4473656	82	2.2	78	87	8	242	0	30	0	69	0.89
4473512--4473626	43	2.5	46	79	16	123	0	29	0	70	0.88
4473803--4473857	28	2.0	28	100	0	110	36	0	7	56	1.27
4474602--4474652	13	3.9	13	77	10	59	60	1	0	37	1.08
4476926--4476975	23	2.3	23	86	6	68	30	0	2	68	1.01
4477107--4477158	16	3.1	16	77	5	59	57	1	1	38	1.21
4477259--4477306	21	2.2	21	85	7	60	70	2	0	27	0.98
4477543--4477591	13	3.8	13	86	0	62	36	2	6	55	1.37
4492605--4492658	24	2.2	24	96	0	99	35	3	7	53	1.47
4494695--4494741	24	2.0	24	91	0	76	36	19	25	19	1.95
4494786--4494851	26	2.5	26	85	7	89	34	19	25	19	1.96
4496076--4496142	21	3.2	21	73	0	71	46	14	20	17	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4498009--4498061	27	2.0	26	81	3	61	41	0	3	54	1.18
4507747--4507799	22	2.5	21	76	14	54	18	5	7	67	1.35
4508829--4508896	18	3.9	17	70	19	50	42	0	2	54	1.15
4509039--4509080	12	3.4	12	90	3	66	45	0	0	54	0.99
4520124--4520165	21	2.0	21	85	0	57	54	4	0	40	1.21
4548704--4548761	25	2.2	26	85	11	75	39	1	3	55	1.27
4548704--4548762	27	2.3	25	82	11	66	38	1	3	55	1.26
4549599--4549661	30	2.1	30	82	5	74	41	22	14	22	1.89
4563266--4563324	27	2.2	27	81	6	66	37	0	10	52	1.35
4563503--4563871	44	8.4	43	67	16	161	29	24	19	26	1.98
4563499--4563903	131	3.1	131	95	0	702	29	25	18	26	1.98
4563558--4563904	44	8.0	43	68	15	162	30	23	19	26	1.98
4563806--4564111	102	3.0	102	99	0	603	32	25	17	24	1.97
4565623--4565670	23	2.0	24	92	4	80	14	18	0	66	1.25
4565642--4565674	15	2.2	15	89	10	50	12	12	0	75	1.04
4566147--4566262	1	116.0	1	72	0	88	1	5	6	86	0.77
4566147--4566261	18	6.4	18	80	10	110	1	5	6	86	0.78
4566146--4566261	45	2.6	45	80	5	144	1	5	7	85	0.80
4570464--4570522	3	19.7	3	73	13	50	67	1	1	28	1.10
4570477--4570516	17	2.4	17	87	8	55	67	2	0	30	1.04
4570464--4570523	30	2.1	27	84	12	75	68	1	1	28	1.09
4570488--4570522	17	2.1	16	89	5	52	71	2	0	25	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4574132--4574174	20	2.2	20	100	0	86	62	13	9	13	1.53
4575888--4575941	27	2.0	27	88	0	81	31	18	27	22	1.97
4592596--4592636	19	2.1	20	90	4	66	36	2	0	60	1.10
4597714--4597761	3	16.0	3	100	0	96	33	0	0	66	0.92
4597863--4597943	42	2.0	42	87	2	119	46	16	6	30	1.71
4599720--4599865	37	4.0	37	93	1	242	24	21	16	36	1.94
4599872--4600143	52	5.3	52	88	6	403	27	22	14	35	1.93
4599829--4600143	150	2.1	150	92	1	522	27	22	14	35	1.93
4599829--4600149	98	3.3	98	87	7	447	28	22	14	34	1.93
4602837--4602883	19	2.3	20	85	7	60	31	4	2	61	1.27
4608678--4608725	3	16.3	3	95	4	89	31	0	0	68	0.90
4608821--4608902	42	2.0	42	90	2	130	47	15	7	29	1.73
4610099--4610139	19	2.1	20	86	4	57	34	4	0	60	1.18
4610614--4610645	16	2.0	16	100	0	64	0	18	12	68	1.20
4613113--4613276	82	2.0	82	92	2	276	40	12	9	37	1.74
4617205--4617325	18	6.7	18	76	16	110	43	9	11	34	1.74
4617282--4617409	43	3.1	41	77	16	122	50	10	12	25	1.72
4617392--4617482	18	5.1	18	70	14	64	43	10	6	38	1.66
4617370--4617469	52	1.9	53	87	2	148	42	10	10	38	1.72
4618441--4618496	24	2.4	24	84	3	87	1	8	16	73	1.17
4618715--4618765	23	2.2	23	82	3	57	3	13	15	66	1.39
4619256--4619300	23	1.9	24	86	4	65	44	0	2	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4620311--4620370	31	1.9	31	96	0	111	20	1	25	53	1.55
4625988--4626045	21	2.7	21	86	5	71	51	8	25	13	1.70
4630336--4630399	33	1.9	33	87	0	92	15	9	46	28	1.77
4657733--4657771	14	2.8	14	80	0	51	25	0	2	71	0.98
4659288--4659735	224	2.0	222	95	0	806	44	12	12	31	1.79
4670686--4670778	18	5.2	18	90	0	141	31	15	24	29	1.95
4670684--4670778	36	2.6	36	93	0	163	30	15	24	29	1.96
4673181--4673210	14	2.1	15	93	6	53	66	3	0	30	1.07
4675618--4675701	5	17.4	5	77	20	90	59	0	0	40	0.97
4675622--4675701	29	2.8	28	82	15	94	60	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153