genome.fa.s18.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  48  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16052463--16053204	254	2.9	252	85	3	977	25	26	25	22	2.00
16052453--16053225	255	3.0	253	84	3	1005	25	25	25	23	2.00
16054027--16054130	42	2.5	42	82	3	129	38	18	25	17	1.92
16054293--16054373	42	1.9	42	92	5	137	40	20	23	14	1.90
16054310--16054383	21	3.5	21	69	0	67	41	20	24	13	1.88
16054040--16054536	247	2.0	247	97	0	931	35	19	18	26	1.95
16057691--16057736	2	25.0	2	83	16	64	47	0	0	52	1.00
16058960--16059014	26	2.2	25	90	3	83	36	0	18	45	1.49
16059322--16059425	45	2.3	45	83	0	136	19	18	20	42	1.90
16059604--16059794	18	10.6	18	77	10	167	33	12	16	37	1.86
16059592--16059794	72	2.8	72	80	6	198	34	11	16	37	1.85
16064297--16064369	3	24.7	3	80	2	76	30	5	1	63	1.26
16064919--16065166	114	2.2	114	100	0	496	27	20	18	34	1.95
16076031--16076201	87	1.9	89	84	6	233	36	21	21	20	1.95
16076249--16076383	69	2.0	69	85	4	184	28	21	20	28	1.98
16076395--16076848	44	10.0	44	70	14	262	31	18	22	26	1.97
16076401--16076848	182	2.4	185	84	5	577	31	18	23	26	1.97
16076633--16076850	45	4.7	45	72	9	152	30	18	23	27	1.98
16076672--16076848	97	1.8	97	86	0	255	31	18	23	27	1.98
16077788--16077823	18	2.0	18	94	0	63	8	44	8	38	1.65
16078120--16078192	3	24.7	3	80	2	76	30	5	1	63	1.26
16079542--16079594	26	2.0	26	88	0	79	47	5	9	37	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16080185--16080215	15	2.1	15	93	0	53	32	12	9	45	1.75
16082310--16082340	3	10.3	3	92	0	53	61	0	3	35	1.12
16083823--16083948	24	5.3	24	77	10	100	26	18	17	38	1.92
16089221--16089714	246	2.0	246	100	0	988	28	24	15	30	1.96
16090285--16090406	60	2.0	60	98	0	235	35	17	16	31	1.92
16090563--16091979	708	2.0	708	100	0	2834	29	23	14	32	1.94
16095492--16095548	20	2.9	21	86	5	75	24	28	10	36	1.88
16095635--16095675	21	2.0	21	95	0	73	24	17	29	29	1.97
16096994--16097034	21	2.0	21	90	0	64	26	29	19	24	1.98
16097077--16097137	30	2.0	31	84	9	81	19	9	21	49	1.77
16097128--16097166	20	2.0	20	100	0	78	41	12	25	20	1.88
16099528--16099585	29	2.0	30	82	3	73	37	6	12	43	1.69
16103120--16103178	31	1.9	31	86	6	84	42	11	6	38	1.68
16104948--16104981	6	5.7	6	96	0	59	17	2	32	47	1.63
16104948--16104994	18	2.6	18	86	0	58	19	8	29	42	1.80
16112795--16112854	22	2.7	23	73	19	63	66	6	0	26	1.16
16112804--16112837	4	8.0	4	90	9	50	73	2	0	23	0.97
16114191--16114243	23	2.4	22	76	20	56	9	18	1	69	1.25
16116591--16116650	22	2.7	23	73	19	63	66	6	0	26	1.16
16116600--16116633	4	8.0	4	90	9	50	73	2	0	23	0.97
16116951--16117018	34	2.0	34	100	0	136	47	14	11	26	1.79
16126204--16126660	123	3.7	122	83	7	621	27	14	21	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16126197--16126735	252	2.1	251	95	0	952	29	14	20	35	1.92
16126204--16126698	122	4.0	123	83	6	638	27	14	21	36	1.92
16126611--16127630	72	14.1	72	95	1	1642	31	16	18	33	1.93
16127553--16127717	87	1.9	87	83	7	219	26	20	18	35	1.95
16127713--16127745	14	2.4	14	95	5	59	12	9	9	69	1.36
16127832--16128147	54	5.9	54	90	5	484	29	15	17	37	1.91
16127832--16128147	107	3.0	105	90	5	494	29	15	17	37	1.91
16128389--16128425	15	2.4	16	90	4	58	72	2	0	24	0.97
16128421--16128522	30	3.4	30	84	2	134	29	22	3	44	1.71
16129328--16129847	17	29.8	18	70	14	258	33	11	11	43	1.77
16129339--16129392	16	3.2	16	75	14	56	35	14	9	40	1.78
16129429--16129512	38	2.3	38	83	4	109	36	15	9	38	1.80
16129385--16129588	74	2.8	74	80	8	211	34	12	10	42	1.77
16129351--16129701	35	9.8	34	71	16	185	33	12	10	42	1.78
16129826--16129878	20	2.6	20	78	3	70	43	9	7	39	1.65
16134037--16134094	25	2.4	24	88	5	82	62	0	1	36	1.06
16134039--16134104	25	2.5	26	73	14	64	65	0	1	33	1.02
16134423--16134479	23	2.5	23	77	5	62	68	0	0	31	0.90
16138669--16138736	34	1.9	36	82	11	88	64	7	1	26	1.28
16140015--16140047	16	2.1	16	100	0	66	18	12	24	45	1.83
16147847--16148306	229	2.0	229	97	0	877	33	16	18	30	1.94
16152087--16152193	45	2.4	45	84	3	126	42	16	17	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16153563--16153619	20	2.8	20	82	15	71	54	1	1	42	1.21
16153569--16153680	39	3.0	38	75	16	108	57	2	0	39	1.19
16153611--16153693	39	2.0	39	81	9	94	59	3	0	37	1.15
16166479--16166526	25	1.9	25	87	8	71	58	8	4	29	1.46
16172010--16172082	31	2.4	30	82	8	94	46	21	10	20	1.81
16172585--16172647	30	2.1	30	85	5	83	20	9	11	58	1.60
16172723--16172756	18	1.9	17	88	5	50	26	2	11	58	1.47
16172895--16173158	64	4.2	64	91	0	379	23	13	15	46	1.82
16172940--16172970	16	1.9	16	93	0	53	12	9	22	54	1.67
16174787--16174964	43	4.2	43	89	2	265	26	8	20	43	1.82
16174787--16174964	83	2.1	84	89	4	270	26	8	20	43	1.82
16175631--16175676	21	2.2	21	84	0	56	39	28	21	10	1.87
16176105--16176216	56	2.0	56	91	3	181	30	19	10	39	1.86
16176273--16176331	30	2.0	30	83	6	77	49	20	5	25	1.69
16176771--16176821	26	2.0	26	88	7	77	0	37	1	60	1.08
16183336--16183435	27	3.6	27	78	9	103	41	32	5	22	1.75
16184439--16184486	14	3.5	13	86	11	60	18	4	2	75	1.07
16184439--16184523	28	3.0	28	74	10	73	28	5	1	64	1.24
16184931--16184976	14	3.3	14	80	16	51	45	4	0	50	1.21
16184940--16184976	15	2.5	15	87	12	51	45	5	0	48	1.25
16195153--16195187	14	2.5	14	100	0	70	37	5	0	57	1.23
16196489--16196519	16	1.9	16	100	0	62	6	29	0	64	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16204404--16204468	30	2.2	30	83	5	78	44	4	15	35	1.67
16204663--16204711	17	2.6	19	75	21	50	61	0	4	34	1.15
16217649--16217686	19	2.0	19	89	0	58	65	5	2	26	1.27
16218624--16218680	30	1.9	29	82	10	71	35	1	7	56	1.37
16220746--16220776	7	4.3	7	92	8	53	61	0	0	38	0.96
16220735--16220786	17	3.2	16	76	17	54	65	1	0	32	1.04
16231073--16231231	44	3.6	44	79	7	146	24	20	22	32	1.98
16233047--16233237	43	4.4	44	78	10	189	27	16	26	29	1.97
16238136--16238184	18	2.8	17	84	9	62	12	16	40	30	1.85
16253966--16254113	66	2.2	66	80	5	183	41	1	12	44	1.51
16253976--16254090	33	3.5	33	92	2	187	44	0	14	40	1.52
16254194--16254463	125	2.2	126	86	2	366	37	15	16	31	1.90
16267112--16267287	47	3.7	47	83	3	228	32	30	16	21	1.95
16270704--16270780	24	3.2	24	74	9	77	45	7	6	40	1.59
16270855--16270879	9	2.8	9	100	0	50	56	0	0	44	0.99
16271383--16271431	19	2.6	18	80	6	53	51	4	6	38	1.46
16271548--16271609	23	2.7	23	85	5	72	54	3	6	35	1.42
16271660--16271696	19	1.9	19	88	0	56	56	2	0	40	1.13
16275728--16275761	17	1.9	18	88	5	52	44	0	2	52	1.16
16281814--16281844	15	2.1	15	93	0	53	16	64	19	0	1.29
16282993--16283048	29	1.9	29	96	0	103	35	16	17	30	1.92
16286075--16286110	18	1.9	19	88	5	56	27	27	25	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16288452--16288503	17	3.1	17	86	5	70	55	1	1	40	1.22
16292717--16292784	27	2.5	27	82	0	73	26	36	8	27	1.86
16300029--16300087	18	3.2	18	76	11	57	20	3	3	72	1.13
16300079--16300116	15	2.5	15	83	8	51	21	0	7	71	1.11
16301691--16301731	22	1.9	22	95	5	75	60	9	19	9	1.55
16313275--16313315	6	6.7	6	83	5	55	46	17	19	17	1.85
16313298--16313405	45	2.4	44	84	9	146	45	16	14	23	1.84
16313601--16313687	40	2.2	40	85	0	111	40	18	9	32	1.82
16314019--16314064	22	2.1	22	84	8	58	23	19	0	56	1.42
16314578--16314604	12	2.2	12	100	0	54	44	29	0	25	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153