genome.fa.s18.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  50  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16582249--16582305	29	1.9	30	85	3	80	36	12	12	38	1.80
16583042--16583089	19	2.6	19	87	9	64	75	2	10	12	1.14
16583041--16583090	6	8.0	6	84	8	55	72	2	12	14	1.22
16584123--16584173	23	2.2	24	82	3	59	54	1	0	43	1.11
16586648--16586685	13	2.9	13	96	0	67	44	5	0	50	1.24
16587985--16588023	20	2.1	18	85	9	51	61	0	0	38	0.96
16588021--16588074	28	1.9	28	85	7	74	72	3	9	14	1.24
16594544--16594577	16	2.1	16	88	0	50	44	0	0	55	0.99
16595096--16595128	17	1.9	17	88	11	50	57	0	6	36	1.23
16603162--16603246	35	2.4	36	84	2	109	34	16	21	28	1.95
16603086--16603446	38	9.8	36	71	11	189	36	12	21	30	1.90
16603268--16603469	75	2.7	75	81	8	209	38	11	20	29	1.88
16603379--16603474	35	2.7	36	77	8	106	37	12	20	29	1.90
16607752--16607784	17	1.9	17	93	0	57	66	24	3	6	1.28
16612981--16613359	74	5.1	74	77	8	351	32	15	19	32	1.93
16612985--16613359	148	2.5	146	82	7	450	32	14	19	33	1.92
16614631--16614685	22	2.5	23	77	13	62	43	0	3	52	1.18
16616072--16616111	14	2.9	15	85	10	50	47	15	2	35	1.58
16616036--16616103	34	2.0	35	91	2	111	48	13	5	32	1.66
16616901--16616938	18	2.1	19	90	5	60	26	0	2	71	1.00
16617265--16617405	51	2.8	51	79	4	142	40	9	16	34	1.80
16628651--16628702	15	3.6	15	80	12	56	44	0	1	53	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16628595--16628818	120	1.9	120	96	1	414	42	2	5	49	1.39
16628599--16628786	61	3.1	60	69	18	174	42	2	6	48	1.40
16628780--16628821	15	2.7	16	82	14	52	45	0	2	52	1.13
16628771--16628812	15	2.9	15	82	10	52	47	0	0	52	1.00
16629048--16629097	16	3.1	16	88	5	66	20	34	4	42	1.70
16629229--16629308	37	2.1	40	83	6	103	53	2	1	42	1.22
16634240--16634280	21	2.0	21	90	0	64	19	29	21	29	1.98
16639021--16639061	21	2.0	21	90	0	64	19	29	21	29	1.98
16647414--16647452	17	2.3	17	86	0	51	79	0	20	0	0.73
16674652--16674681	14	2.1	15	93	6	53	73	0	0	26	0.84
16675621--16675660	20	2.0	20	85	9	55	2	17	25	55	1.55
16682039--16682078	20	1.9	20	85	10	53	52	2	7	37	1.43
16684422--16684583	42	3.9	42	82	3	175	45	17	20	17	1.86
16684457--16684525	21	3.3	21	67	15	61	49	18	17	14	1.80
16689720--16689758	19	2.1	19	86	13	55	66	10	7	15	1.43
16689960--16690035	20	4.0	19	76	11	75	38	0	3	57	1.17
16690002--16690096	20	4.4	20	74	25	72	37	0	4	57	1.18
16690061--16690102	10	4.1	10	79	14	50	30	0	7	61	1.22
16691131--16691210	21	3.9	21	77	3	83	17	25	17	40	1.91
16691679--16691719	20	2.0	22	85	9	59	24	4	31	39	1.76
16693924--16693959	18	1.9	18	88	5	54	36	2	2	58	1.27
16693966--16694013	20	2.4	20	86	13	64	35	0	8	56	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16697043--16697471	89	4.9	88	78	5	375	29	24	17	28	1.98
16697013--16697427	221	1.9	221	92	1	706	28	24	18	28	1.98
16706319--16706366	24	2.0	24	100	0	96	12	33	4	50	1.59
16709510--16709546	7	5.1	7	90	3	56	70	0	2	27	1.01
16722030--16722109	38	2.1	38	92	0	133	45	26	6	22	1.76
16723524--16723594	36	1.9	37	82	5	90	26	8	8	56	1.58
16723500--16723567	20	3.3	21	76	15	54	30	5	7	55	1.51
16726857--16726915	6	9.8	6	100	0	118	50	15	0	33	1.44
16727684--16727726	16	2.7	16	82	10	52	55	2	0	41	1.12
16728191--16728237	18	2.6	18	86	3	58	74	4	8	12	1.19
16731791--16731815	2	12.5	2	100	0	50	48	0	0	52	1.00
16740444--16740481	16	2.4	16	86	4	51	5	7	21	65	1.38
16745378--16745438	31	2.0	31	86	0	86	34	11	6	47	1.66
16751980--16752097	58	2.0	58	98	0	227	55	4	5	34	1.41
16759171--16759216	23	2.0	23	95	0	83	30	23	0	45	1.53
16763213--16763256	21	2.1	21	83	8	54	4	18	0	77	0.94
16766899--16766954	26	2.2	26	100	0	112	35	26	7	30	1.83
16772277--16772915	131	4.9	130	74	5	423	27	18	18	35	1.94
16777472--16777645	87	2.0	87	97	0	330	40	24	21	13	1.89
16783549--16783597	3	16.3	3	95	0	89	69	0	30	0	0.89
16784483--16784758	133	2.1	133	82	4	342	26	21	26	26	1.99
16787815--16788413	131	4.6	131	75	8	443	27	19	18	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16787946--16788392	129	3.4	132	76	6	329	27	19	18	34	1.95
16789460--16789570	44	2.5	45	82	7	122	30	18	21	29	1.97
16789642--16790211	44	13.0	44	67	14	302	21	24	20	33	1.97
16789599--16790211	88	7.0	88	85	1	802	22	23	20	33	1.97
16789598--16790211	175	3.5	175	89	1	890	21	23	20	33	1.97
16795358--16795513	42	3.7	42	77	16	169	30	26	18	24	1.98
16802686--16802841	42	3.7	42	77	16	169	30	26	18	24	1.98
16812953--16813004	26	2.0	26	84	0	68	51	1	15	30	1.54
16812986--16813039	27	2.0	26	85	3	72	57	3	11	27	1.50
16813155--16813242	3	29.0	3	73	11	72	59	2	7	30	1.39
16815974--16816043	4	18.0	4	82	5	54	14	4	5	75	1.14
16815995--16816038	19	2.3	19	84	0	52	18	6	0	75	1.02
16816093--16816134	18	2.3	18	80	8	50	23	4	0	71	1.05
16816109--16816148	21	1.9	21	85	10	55	22	5	2	70	1.19
16819898--16819932	18	1.9	18	88	0	52	40	11	17	31	1.85
16819905--16819948	18	2.5	17	85	7	52	38	15	13	31	1.87
16825587--16825763	44	3.9	44	79	6	167	35	15	19	29	1.93
16825682--16826138	145	3.2	146	90	2	699	31	17	20	30	1.95
16826105--16826224	45	2.7	45	85	1	161	30	17	23	29	1.97
16827734--16827796	4	16.0	4	80	3	65	19	4	3	73	1.15
16827847--16827888	18	2.3	18	80	8	50	23	4	0	71	1.05
16833831--16833881	25	2.0	26	84	3	68	21	3	5	68	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16844110--16844162	18	2.9	18	77	5	63	32	26	16	24	1.97
16844173--16844256	41	2.0	41	97	0	159	29	17	14	38	1.90
16844181--16844246	21	3.2	21	65	26	59	30	18	12	39	1.87
16851288--16851379	43	2.1	45	82	8	109	31	14	27	27	1.95
16851187--16851810	176	3.5	175	81	9	678	31	18	24	26	1.98
16853238--16853288	25	2.0	26	84	3	68	21	3	3	70	1.20
16863021--16863242	48	4.6	48	79	4	241	27	20	29	22	1.98
16863021--16863242	96	2.3	96	83	4	270	27	20	29	22	1.98
16871289--16871346	12	5.1	12	78	17	52	32	1	5	60	1.29
16871316--16871356	12	3.4	12	84	15	50	26	0	9	63	1.25
16872651--16872675	13	1.9	13	100	0	50	84	0	16	0	0.63
16873336--16873367	7	4.6	7	96	0	55	81	0	0	18	0.70
16874153--16874186	16	2.1	16	88	0	50	41	0	2	55	1.15
16875603--16875651	23	2.1	23	81	7	55	36	6	0	57	1.24
16876900--16876929	11	2.7	11	94	0	51	63	16	16	3	1.44
16877828--16877859	3	10.7	3	100	0	64	31	0	0	68	0.90
16877968--16878012	18	2.7	16	83	16	56	33	2	0	64	1.06
16878380--16878430	20	2.5	20	78	12	59	23	11	3	60	1.47
16884717--16884756	20	2.0	20	95	0	71	42	15	12	30	1.83
16885160--16885247	44	2.0	44	84	4	115	29	11	28	30	1.92
16885256--16885439	44	4.2	44	68	12	126	30	20	21	27	1.98
16885247--16885728	131	3.7	131	88	1	705	29	20	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16885721--16885895	88	2.0	88	89	0	269	33	19	23	23	1.97
16885733--16885929	88	2.2	88	80	0	223	35	20	19	24	1.96
16886073--16886606	44	12.0	44	68	10	226	31	18	22	28	1.97
16886178--16886379	89	2.3	90	83	2	246	33	18	22	25	1.96
16886229--16886372	45	3.2	45	68	8	114	35	17	20	27	1.94
16886267--16886554	133	2.2	134	82	1	337	28	18	24	28	1.98
16886267--16886590	133	2.4	133	80	4	321	29	17	24	29	1.97
16888698--16888726	14	2.0	15	93	6	51	24	0	0	75	0.80
16890105--16890254	53	2.8	53	92	1	255	36	15	12	36	1.84
16892073--16892100	14	2.0	14	100	0	56	50	14	7	28	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153