genome.fa.s26.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  100  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31084207--31084765	63	9.3	62	78	14	561	31	0	23	43	1.59
31084200--31084765	241	2.3	243	89	6	862	31	0	23	43	1.59
31084737--31084786	26	2.0	25	92	4	82	16	2	34	48	1.57
31086951--31086983	14	2.3	15	89	5	50	66	6	0	27	1.15
31087089--31087138	10	4.8	10	78	7	55	56	2	0	42	1.11
31087076--31087140	31	2.1	31	88	5	96	61	1	0	36	1.05
31087084--31087127	21	2.1	21	91	4	72	63	0	0	36	0.95
31087136--31087169	17	1.9	18	88	5	52	64	0	11	23	1.26
31087184--31087225	22	1.9	22	95	0	75	33	0	35	30	1.58
31091127--31091224	26	3.6	25	69	16	70	7	11	5	76	1.14
31091159--31091311	9	17.9	8	68	20	62	10	8	3	77	1.09
31091110--31091260	58	2.5	60	86	9	193	8	11	5	74	1.20
31091152--31091305	36	4.4	34	78	14	134	9	9	3	77	1.10
31091128--31091283	84	1.8	84	82	6	199	8	11	3	76	1.14
31091507--31091550	11	4.1	10	83	13	52	77	2	9	11	1.08
31097679--31097744	22	3.0	21	80	12	71	53	4	1	40	1.31
31097802--31097867	22	2.9	23	75	4	71	57	3	0	39	1.14
31097816--31097890	22	3.3	22	75	10	71	57	2	0	40	1.13
31097802--31097890	45	2.0	46	82	6	110	56	3	0	40	1.16
31097858--31097883	13	2.0	13	100	0	52	53	7	0	38	1.30
31097820--31097890	23	3.2	22	75	16	67	57	2	0	39	1.13
31097890--31097934	24	1.9	23	86	4	63	75	11	4	8	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31099770--31099885	25	4.7	24	82	9	135	14	29	21	34	1.93
31102155--31102208	26	2.1	26	100	0	108	42	3	18	35	1.68
31102376--31102424	22	2.3	22	89	3	73	22	12	24	40	1.88
31107466--31107542	27	2.9	27	77	9	86	46	1	1	50	1.17
31107595--31107629	18	2.0	17	88	5	52	45	0	0	54	0.99
31107507--31107766	120	2.2	119	88	4	402	45	1	5	48	1.31
31107715--31107749	18	2.0	17	88	5	52	45	0	0	54	0.99
31107715--31107769	15	3.4	16	80	16	53	47	0	1	50	1.11
31107703--31108017	155	2.0	157	94	1	553	48	5	3	43	1.42
31108069--31108159	45	2.0	45	85	2	121	37	28	6	27	1.82
31108140--31108175	16	2.2	16	100	0	72	38	36	0	25	1.56
31111556--31111630	39	1.9	39	97	0	141	34	21	16	28	1.94
31111592--31111742	51	3.0	51	93	0	257	29	22	16	31	1.96
31115922--31115948	12	2.2	12	100	0	54	70	0	0	29	0.88
31116014--31116088	34	2.2	35	79	13	86	65	25	5	4	1.31
31120601--31120627	12	2.2	12	100	0	54	70	0	0	29	0.88
31120693--31120767	34	2.2	35	79	13	86	65	25	5	4	1.31
31128151--31128199	22	2.2	22	92	0	80	36	24	4	34	1.75
31139387--31139420	17	1.9	18	88	5	52	50	0	8	41	1.34
31139691--31139745	24	2.4	22	82	11	58	54	7	5	32	1.51
31139779--31139817	6	6.5	6	96	0	69	66	12	0	20	1.24
31141874--31141922	20	2.5	19	80	6	62	14	14	6	65	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31151916--31151950	17	2.1	17	89	10	54	71	5	2	20	1.19
31152324--31152386	22	3.0	22	71	13	60	58	3	4	33	1.35
31154987--31155011	7	3.6	7	100	0	50	28	0	16	56	1.41
31155663--31155702	18	2.2	18	95	0	71	22	30	7	40	1.81
31156131--31156248	25	5.0	24	75	14	129	40	0	13	45	1.43
31156121--31156253	69	1.9	69	98	0	257	39	0	12	48	1.42
31156245--31156286	9	4.8	9	85	2	59	38	0	9	52	1.34
31156317--31156600	23	12.6	23	79	13	322	45	26	0	28	1.57
31156394--31156470	21	3.6	21	72	19	77	41	37	0	20	1.53
31156317--31156600	67	4.2	66	79	13	235	45	26	0	28	1.57
31159163--31159538	123	3.0	124	87	3	549	32	21	16	30	1.95
31160797--31160824	6	4.7	6	100	0	56	53	0	0	46	1.00
31169139--31169206	20	3.4	20	78	11	77	41	16	26	16	1.88
31180589--31181176	40	14.7	40	94	0	1005	30	20	26	22	1.98
31188340--31188968	40	15.7	40	92	2	1014	30	20	26	22	1.98
31192329--31192359	16	1.9	16	93	0	53	48	0	9	41	1.36
31195868--31195902	13	2.6	14	86	9	54	22	11	14	51	1.74
31196866--31196927	21	3.0	21	83	4	74	45	16	22	16	1.85
31229990--31230214	70	3.2	68	83	5	261	17	19	24	38	1.93
31230015--31230253	70	3.4	69	81	3	253	18	19	22	38	1.93
31229990--31230251	141	1.9	139	80	3	310	18	19	23	38	1.93
31239390--31239427	15	2.5	15	100	0	76	18	18	7	55	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31251254--31251290	16	2.2	18	85	9	51	40	18	2	37	1.65
31258339--31258383	22	2.0	22	83	8	56	40	4	0	55	1.20
31270700--31270741	6	7.0	6	97	0	66	54	11	0	33	1.37
31276321--31276353	17	1.9	17	88	11	50	75	6	0	18	1.00
31278187--31278407	111	2.0	111	91	0	361	33	17	16	32	1.92
31278962--31279025	25	2.6	25	97	0	119	18	35	10	34	1.86
31281456--31281688	54	4.1	54	74	14	234	42	1	7	47	1.42
31281471--31281556	28	3.1	27	65	24	63	46	2	8	43	1.46
31281558--31281609	15	3.6	15	80	12	56	44	0	1	53	1.11
31281510--31281725	120	1.8	120	100	0	432	42	1	6	49	1.38
31281687--31281728	15	2.7	16	82	14	52	45	0	2	52	1.13
31281678--31281719	15	2.9	15	82	10	52	47	0	0	52	1.00
31281839--31281949	45	2.6	43	79	10	122	32	28	5	33	1.80
31281929--31281996	16	4.2	16	94	0	109	35	35	0	29	1.58
31293724--31294158	44	9.9	44	88	0	593	31	20	24	23	1.98
31296323--31296543	111	2.0	111	92	0	370	33	18	16	32	1.93
31306966--31307727	387	2.0	386	94	0	1355	31	13	20	33	1.92
31308316--31308369	19	2.8	20	83	10	78	18	29	5	46	1.72
31308289--31308369	19	4.4	18	78	17	69	22	30	4	41	1.75
31311809--31311847	12	3.2	12	85	0	51	20	23	5	51	1.67
31312096--31312284	50	3.7	50	79	7	184	21	28	21	28	1.99
31312046--31312284	50	4.7	49	77	7	169	22	26	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31314040--31314111	27	2.7	27	95	0	126	37	18	20	23	1.94
31315750--31315926	27	6.6	27	83	1	221	33	19	22	24	1.97
31315947--31316063	24	4.9	24	84	2	146	24	6	22	46	1.76
31316193--31316246	26	2.1	26	85	0	72	16	22	27	33	1.95
31316249--31316355	32	3.4	32	84	3	146	22	17	18	41	1.91
31324158--31324197	20	2.1	18	86	9	53	25	0	10	65	1.24
31324162--31324212	25	2.0	25	81	7	59	27	1	9	60	1.39
31335745--31335795	18	2.8	18	85	8	68	37	21	0	41	1.54
31340071--31340121	24	2.1	24	92	0	84	39	21	17	21	1.93
31341553--31341606	18	3.0	18	75	5	56	35	20	3	40	1.70
31342546--31342581	17	2.1	18	89	5	56	13	30	33	22	1.93
31351715--31351772	26	2.2	26	90	6	91	36	6	15	41	1.74
31353826--31353951	45	2.8	45	83	0	153	38	18	20	22	1.93
31353923--31354133	91	2.3	90	85	3	262	47	15	18	18	1.83
31353923--31354085	46	3.6	46	82	0	211	48	14	17	19	1.81
31353923--31354133	45	4.6	45	79	1	206	47	15	18	18	1.83
31356476--31356546	1	71.0	1	77	0	70	0	0	11	88	0.51
31356474--31356544	6	12.2	6	85	8	94	0	0	12	87	0.55
31356479--31356548	8	9.1	8	82	17	87	0	0	12	87	0.55
31363784--31363867	26	3.3	27	74	14	79	39	22	22	15	1.92
31364831--31364858	13	2.2	13	100	0	56	21	14	0	64	1.29
31366817--31366891	27	2.8	27	91	0	114	21	16	17	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31367139--31367176	20	1.9	20	94	0	67	26	36	18	18	1.94
31368693--31368995	151	2.0	151	92	0	498	32	21	14	32	1.93
31375216--31375259	5	8.6	5	80	5	52	43	20	0	36	1.52
31378408--31378458	26	2.0	26	92	0	84	27	19	23	29	1.98
31385393--31385435	22	2.0	22	90	0	68	39	23	20	16	1.92
31395794--31395838	22	2.0	22	83	8	56	40	4	0	55	1.20
31403001--31403110	41	2.7	41	88	0	166	30	20	26	22	1.99
31403084--31403136	26	2.0	26	92	0	88	16	20	33	28	1.95
31403110--31403261	42	3.6	41	77	11	139	23	15	25	35	1.94
31403146--31403257	43	2.7	41	75	10	111	23	14	26	35	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204