genome.fa.s26.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  142  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43640139--43640902	45	17.0	45	78	5	753	29	24	17	28	1.97
43649484--43649540	26	2.1	27	83	3	71	29	1	3	64	1.20
43654168--43654298	13	10.2	13	76	9	117	51	5	5	38	1.48
43654168--43654297	27	5.0	27	73	12	112	50	5	5	38	1.48
43654168--43654298	40	3.4	40	82	10	166	51	5	5	38	1.48
43656174--43656215	7	6.0	7	100	0	84	42	0	42	14	1.45
43656820--43656844	13	1.9	13	100	0	50	32	8	8	52	1.60
43670646--43670971	41	7.6	41	73	10	206	31	18	21	29	1.97
43670632--43670967	128	2.6	129	88	3	482	32	18	20	28	1.96
43670904--43671016	44	2.6	44	92	0	190	30	15	22	31	1.94
43674077--43674421	44	7.8	44	69	11	175	31	18	23	26	1.98
43674053--43674225	90	2.0	88	83	5	224	28	21	25	24	1.99
43674229--43674516	88	3.3	87	70	9	224	30	18	22	27	1.98
43674185--43674516	178	1.9	177	87	0	484	30	18	23	27	1.97
43674069--43675009	44	21.4	44	66	12	166	28	19	24	27	1.98
43674320--43675007	219	3.1	218	85	6	885	28	19	24	27	1.99
43675057--43675347	50	5.9	50	71	4	205	30	22	21	25	1.98
43676688--43676745	6	9.2	6	76	10	53	17	5	3	74	1.15
43676771--43676795	3	8.3	3	100	0	50	32	0	0	68	0.90
43678456--43678573	13	9.3	14	75	15	71	37	5	5	51	1.48
43678460--43678547	40	2.2	40	91	4	142	36	3	5	54	1.41
43678480--43678572	27	3.7	27	75	17	94	37	4	5	52	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43678456--43678547	13	6.9	13	81	4	103	36	4	5	53	1.44
43679042--43679116	18	3.8	18	72	25	62	44	8	13	34	1.73
43679072--43679116	18	2.4	18	89	10	65	46	4	13	35	1.63
43679035--43679124	44	2.0	44	93	0	153	44	6	14	34	1.71
43680022--43680081	18	3.3	18	71	13	50	28	5	8	58	1.48
43684736--43684807	35	2.1	35	86	0	99	30	22	23	23	1.99
43686398--43686451	25	2.2	25	96	0	99	27	22	24	25	2.00
43694171--43694223	18	2.8	19	91	5	90	37	15	9	37	1.79
43694636--43694925	44	6.7	44	69	14	190	27	22	20	29	1.98
43695289--43695408	44	2.7	44	89	2	179	28	25	17	28	1.98
43697728--43697788	26	2.3	26	83	5	70	57	4	14	22	1.57
43703131--43703205	19	4.0	19	70	20	68	36	26	1	36	1.65
43704005--43704045	13	3.2	13	86	6	57	0	29	0	70	0.87
43704246--43704300	8	6.8	8	76	12	58	61	1	0	36	1.06
43706251--43706303	18	2.8	19	91	5	90	37	15	9	37	1.79
43711307--43711336	7	4.1	7	95	4	51	40	0	26	33	1.57
43711434--43711536	42	2.5	41	77	13	111	30	18	14	36	1.91
43711818--43711897	42	2.0	40	82	7	99	45	2	3	48	1.33
43714496--43714624	26	5.0	26	79	2	125	21	14	25	37	1.92
43715632--43715679	21	2.2	22	88	3	71	22	25	37	14	1.92
43716203--43716227	13	1.9	13	100	0	50	16	0	20	64	1.30
43721095--43721200	29	3.7	29	85	0	122	41	5	20	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43721091--43721200	58	1.9	58	82	0	139	41	5	21	30	1.76
43726060--43726129	19	3.7	18	73	19	61	68	0	1	30	0.98
43726062--43726130	9	7.4	9	75	16	61	69	0	1	28	0.97
43727686--43727725	14	2.9	14	84	0	53	32	7	17	42	1.77
43727709--43727748	20	2.0	20	90	0	62	27	10	12	50	1.72
43727694--43727760	34	1.9	35	87	3	100	32	8	11	46	1.72
43727918--43727968	26	2.2	24	78	21	56	60	5	0	33	1.21
43733315--43733348	17	2.0	17	94	0	59	14	0	50	35	1.44
43743069--43743117	25	2.0	25	87	0	71	28	14	18	38	1.90
43744518--43744560	17	2.5	17	96	3	77	13	37	30	18	1.90
43745261--43745295	16	2.3	15	95	5	61	85	0	2	11	0.69
43746746--43746794	22	2.2	22	82	10	55	40	2	18	38	1.62
43748817--43748896	26	3.0	25	80	5	88	26	22	12	38	1.90
43750394--43750452	30	2.0	30	96	0	109	27	18	10	44	1.82
43753213--43753310	27	3.6	28	74	6	78	25	25	14	34	1.94
43761965--43762008	19	2.3	19	92	0	70	50	2	13	34	1.55
43764004--43764050	19	2.5	19	79	6	51	46	12	8	31	1.72
43764588--43764629	21	2.0	21	95	0	75	38	9	7	45	1.64
43766634--43767029	46	9.6	44	82	15	383	35	13	22	28	1.92
43766668--43766894	36	6.0	36	85	9	310	37	13	20	28	1.90
43766634--43767029	82	4.9	81	83	12	499	35	13	22	28	1.92
43770722--43770798	38	2.0	38	94	0	136	32	18	5	44	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43778423--43778533	23	5.0	23	77	7	106	35	21	20	22	1.96
43778733--43778821	36	2.4	38	81	9	96	32	22	1	43	1.61
43779756--43779811	17	3.5	16	76	14	53	41	3	1	53	1.29
43779768--43779805	14	2.4	17	87	12	55	50	0	2	47	1.15
43792980--43793052	27	2.7	27	82	4	94	19	32	23	24	1.97
43794996--43795156	62	2.6	62	82	0	205	29	27	21	22	1.99
43796695--43796879	45	4.2	45	78	4	180	31	21	14	32	1.92
43796720--43796898	90	2.0	90	83	3	227	30	21	13	34	1.92
43796955--43797511	44	11.9	44	69	13	279	30	18	16	35	1.92
43796939--43797607	95	7.1	95	87	2	889	30	17	16	35	1.92
43808483--43808516	7	4.9	7	96	0	59	76	0	8	14	1.01
43816545--43816581	19	1.9	19	94	0	65	37	21	5	35	1.77
43816797--43816964	62	2.7	62	80	3	151	27	22	22	27	1.99
43819996--43820228	75	3.1	76	85	3	299	53	11	7	27	1.64
43822533--43822562	16	1.9	15	93	6	51	53	6	0	40	1.27
43822564--43822877	104	3.1	96	75	11	313	51	16	1	30	1.53
43822564--43822863	103	2.9	98	76	14	293	51	15	1	31	1.50
43822879--43823064	34	5.1	38	67	15	151	55	11	1	31	1.43
43822848--43822955	34	3.1	34	65	13	83	51	17	1	28	1.56
43822848--43823083	72	3.3	72	93	0	393	54	13	1	30	1.47
43823096--43823219	60	2.1	60	96	0	230	54	12	0	33	1.37
43823095--43823186	27	3.2	27	64	16	67	54	15	0	30	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43823378--43823422	3	15.0	3	100	0	90	0	33	0	66	0.92
43831090--43831187	25	4.0	25	78	6	92	19	29	21	29	1.97
43832726--43832904	50	3.6	50	88	0	250	21	30	21	26	1.99
43834328--43834366	17	2.3	17	90	0	60	17	15	35	30	1.91
43834391--43834433	22	2.0	22	95	0	77	9	27	18	44	1.80
43837814--43837894	25	3.2	25	85	0	108	35	22	23	18	1.95
43837831--43837905	25	3.0	25	84	0	96	30	20	30	18	1.96
43854390--43854553	43	3.8	43	77	7	181	22	19	29	28	1.98
43860116--43860165	22	2.2	23	89	10	77	30	18	2	50	1.58
43860557--43860683	64	2.0	64	88	0	191	30	25	22	20	1.98
43863752--43863779	3	9.3	3	100	0	56	67	0	0	32	0.91
43866696--43866742	16	2.9	16	81	15	60	34	4	4	57	1.38
43868575--43868696	57	2.1	58	89	1	183	25	18	7	48	1.74
43884702--43884955	56	4.8	56	83	5	289	27	19	28	24	1.99
43892445--43892484	19	2.1	19	85	0	53	32	2	5	60	1.32
43893470--43893584	25	4.7	25	83	2	99	18	25	16	40	1.91
43893661--43893733	27	2.8	25	80	15	85	19	24	20	35	1.95
43893659--43893783	24	5.1	24	72	18	89	19	25	19	36	1.95
43898268--43898314	16	2.9	16	75	9	51	57	2	0	40	1.11
43900658--43900757	17	5.8	18	69	17	61	38	3	5	54	1.38
43908119--43908160	5	8.8	5	86	5	52	78	0	2	19	0.86
43909362--43909485	41	3.0	40	90	5	176	61	0	2	36	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43909385--43909485	12	7.4	14	67	22	56	60	0	2	36	1.12
43909438--43909501	28	2.3	29	89	5	96	60	0	1	37	1.06
43909479--43909513	15	2.2	16	90	5	54	62	0	0	37	0.95
43914594--43914634	17	2.4	18	84	12	59	26	4	0	68	1.10
43914712--43914755	16	2.7	16	78	3	52	31	6	0	61	1.22
43914741--43914807	23	2.8	23	78	10	64	34	7	0	58	1.26
43915896--43915954	21	2.8	21	78	2	64	15	5	6	72	1.23
43915898--43915955	11	5.5	10	78	8	53	13	5	6	74	1.20
43919208--43919264	21	2.7	21	83	2	60	19	5	3	71	1.19
43925198--43925244	23	2.0	23	100	0	94	23	17	29	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204