genome.fa.s26.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  119  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36953662--36953721	15	3.9	15	73	16	52	33	45	0	21	1.52
36953882--36954044	88	1.8	89	90	1	265	46	23	1	28	1.60
36953973--36954108	63	2.2	63	89	0	200	48	21	0	30	1.50
36954202--36954234	15	2.3	15	89	5	50	36	30	3	30	1.73
36954619--36954920	41	7.4	41	76	4	250	31	23	21	23	1.98
36956689--36956738	17	2.7	20	78	18	70	10	0	44	46	1.37
36961330--36961379	17	2.7	20	78	18	70	10	0	44	46	1.37
36964607--36964648	2	21.0	2	95	0	75	50	2	47	0	1.14
36971217--36971278	31	2.0	31	96	3	117	38	20	24	16	1.92
36978029--36978076	25	1.9	25	82	0	60	50	10	18	20	1.76
36978190--36978233	21	2.1	21	100	0	88	31	29	20	18	1.96
36979076--36979149	29	2.6	28	81	8	96	54	1	12	32	1.46
36979413--36979457	23	1.9	24	81	4	56	51	4	8	35	1.54
36980138--36980204	20	3.6	19	74	20	61	71	8	17	1	1.19
36980721--36980767	15	3.3	14	76	11	51	17	0	4	78	0.90
36981048--36982149	44	25.1	45	67	16	433	28	20	18	32	1.96
36981048--36982289	175	7.1	175	95	0	2245	28	20	18	32	1.96
36994251--36994328	28	2.8	28	82	7	104	55	1	11	32	1.44
37005400--37005438	20	2.0	20	85	10	53	30	5	5	58	1.41
37007330--37007365	15	2.4	15	90	0	54	25	22	22	30	1.99
37011156--37011193	17	2.2	17	95	0	67	18	5	0	76	0.97
37012312--37012353	18	2.3	18	83	4	57	64	2	0	33	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37014727--37014785	29	2.0	29	96	0	109	30	27	16	25	1.97
37019058--37019159	42	2.4	42	95	0	177	29	22	24	23	1.99
37026154--37026213	28	2.1	27	84	6	75	76	3	1	18	1.00
37026154--37026213	6	9.7	6	75	24	54	76	3	1	18	1.00
37029878--37029969	19	4.8	19	91	0	157	36	9	16	36	1.82
37029878--37029992	38	2.9	38	90	5	176	36	8	16	38	1.80
37030180--37030224	23	2.0	23	81	0	54	22	2	13	62	1.42
37030377--37030422	23	2.0	22	84	12	58	34	2	0	63	1.07
37036934--37037327	175	2.2	176	84	4	510	29	26	22	21	1.99
37037205--37037338	44	3.0	44	65	4	108	26	33	22	17	1.96
37036934--37037338	88	4.6	88	83	3	503	29	27	21	21	1.99
37037338--37037436	44	2.3	43	84	5	137	25	20	24	30	1.99
37037823--37038329	44	11.7	43	69	12	207	29	20	21	27	1.98
37037809--37038341	217	2.5	217	84	4	646	30	20	22	27	1.98
37038168--37038329	45	3.6	45	85	2	193	30	22	22	24	1.99
37038850--37038941	19	4.8	19	91	0	157	36	9	16	36	1.82
37038850--37038964	38	2.9	38	90	5	176	36	8	16	38	1.80
37039152--37039196	23	2.0	23	81	0	54	22	2	13	62	1.42
37051306--37051336	9	3.4	9	90	0	53	25	12	22	38	1.90
37056469--37056528	26	2.3	26	85	0	84	35	21	23	20	1.96
37058033--37058075	22	2.0	22	85	0	59	58	0	0	41	0.98
37063462--37063506	22	2.1	22	84	12	58	57	4	0	37	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37064172--37064222	20	2.5	20	78	18	52	66	5	0	27	1.14
37066367--37066430	31	2.1	31	94	5	112	50	21	7	20	1.73
37071091--37071138	13	3.7	13	82	0	60	41	18	0	39	1.51
37080133--37080186	24	2.2	24	83	0	63	50	5	3	40	1.44
37080426--37080467	20	2.1	20	82	8	50	11	30	2	54	1.49
37083248--37083305	26	2.3	25	87	3	80	41	10	15	32	1.81
37097414--37097444	15	2.1	15	93	0	53	25	3	29	41	1.71
37097944--37098118	93	1.9	93	97	0	332	30	14	19	35	1.91
37103608--37103654	21	2.2	21	92	0	76	27	12	27	31	1.93
37108671--37108723	27	1.9	28	81	11	65	22	7	13	56	1.62
37110257--37110294	20	1.9	20	94	0	67	21	7	34	36	1.82
37110252--37110296	20	2.2	20	84	0	63	24	6	31	37	1.81
37126167--37126664	44	11.4	43	68	10	217	28	21	24	24	1.99
37126162--37126368	85	2.4	87	78	4	213	27	21	26	24	1.99
37126252--37126679	132	3.3	133	84	3	503	29	22	24	24	1.99
37126335--37126719	129	3.0	128	82	4	355	29	21	23	25	1.99
37129854--37129913	29	2.1	29	84	3	77	50	16	3	30	1.62
37131581--37131629	13	3.8	13	89	8	73	44	30	0	24	1.54
37136196--37136220	5	5.0	5	100	0	50	40	0	0	60	0.97
37138220--37138262	20	2.2	20	95	4	79	72	9	9	9	1.30
37152453--37152521	35	2.0	33	94	5	120	34	14	18	31	1.91
37158536--37158581	24	1.9	24	82	8	58	21	17	10	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37161373--37161418	23	2.0	22	87	4	65	36	17	6	39	1.76
37172818--37173003	93	2.0	93	91	0	300	19	19	22	38	1.94
37173521--37173873	87	4.0	86	81	5	311	34	13	10	41	1.79
37173593--37173873	89	3.2	87	84	4	316	34	14	10	40	1.80
37173880--37174046	84	2.0	84	84	2	219	31	10	11	45	1.76
37173746--37174044	158	1.9	162	80	8	362	34	11	11	42	1.77
37175180--37175220	17	2.3	18	83	4	57	53	9	12	24	1.68
37175472--37175567	50	1.9	50	80	4	113	21	31	25	21	1.98
37179361--37179415	27	2.0	27	85	0	74	30	10	29	29	1.91
37179355--37179407	18	2.9	18	77	0	61	26	11	32	30	1.91
37187215--37187254	18	2.2	18	86	0	53	22	25	10	42	1.84
37191275--37191343	28	2.5	28	85	0	93	30	20	26	23	1.98
37191367--37191418	21	2.5	21	87	0	68	30	48	9	11	1.72
37191660--37191778	27	4.4	26	77	13	107	18	15	19	47	1.83
37191660--37191778	54	2.2	54	86	5	161	18	15	19	47	1.83
37191982--37192017	17	2.1	18	89	5	56	22	38	22	16	1.93
37192892--37192937	13	3.5	13	90	0	74	54	8	15	21	1.68
37202215--37202255	11	3.6	11	93	3	64	17	4	2	75	1.08
37206865--37206899	18	1.9	18	94	0	61	25	31	2	40	1.70
37208363--37208493	33	4.0	33	84	5	167	28	22	20	29	1.98
37213817--37214493	27	25.2	27	79	11	494	19	17	20	42	1.89
37213815--37214485	54	12.5	55	82	6	711	19	17	20	42	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37213805--37214471	81	8.3	80	82	6	647	19	17	20	42	1.90
37219901--37219985	43	2.0	43	86	9	120	23	30	29	16	1.96
37235720--37235748	12	2.3	13	94	5	51	6	6	3	82	0.93
37242539--37242592	19	2.7	20	77	13	58	42	7	18	31	1.78
37242599--37242636	20	1.9	20	88	0	58	55	13	18	13	1.69
37244428--37244495	3	22.7	3	84	0	91	29	1	2	66	1.15
37244789--37244823	4	8.8	4	100	0	70	51	22	0	25	1.48
37244873--37244950	29	2.8	27	84	7	102	32	6	2	58	1.37
37249857--37249907	21	2.4	22	80	3	68	72	0	11	15	1.12
37251291--37252176	44	20.6	44	70	10	499	31	21	19	27	1.97
37251421--37252176	85	8.8	85	70	10	403	32	21	19	27	1.97
37251271--37252137	129	6.7	129	88	1	1184	32	21	19	26	1.97
37253575--37253662	3	29.7	3	75	2	61	29	3	6	60	1.39
37253575--37253662	18	4.8	18	75	9	70	29	3	6	60	1.39
37254023--37254095	29	2.5	28	84	6	92	34	6	1	57	1.34
37255631--37255668	20	1.9	20	84	10	51	39	34	7	18	1.80
37255781--37255807	11	2.5	11	100	0	54	62	14	7	14	1.51
37256200--37256277	28	2.8	28	82	3	95	56	5	34	3	1.40
37256281--37256306	6	4.3	6	100	0	52	50	0	34	15	1.45
37256776--37256830	28	2.0	28	82	7	67	47	32	1	18	1.59
37256826--37256873	20	2.3	20	85	7	60	37	35	6	20	1.78
37256844--37256886	7	6.3	7	78	5	52	30	30	11	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37257393--37257488	28	3.4	28	85	5	131	67	4	25	3	1.23
37257994--37258043	22	2.3	20	80	12	55	42	38	0	20	1.52
37259803--37259875	28	2.6	28	82	2	101	58	6	30	4	1.43
37260291--37260347	20	2.8	21	78	2	71	22	12	31	33	1.91
37260448--37260477	7	4.3	7	100	0	60	56	0	26	16	1.40
37260787--37260868	28	3.0	27	83	5	110	62	6	30	1	1.27
37263969--37264030	18	3.2	20	73	13	67	37	33	4	24	1.77
37264544--37264677	28	4.8	28	80	3	153	63	8	26	0	1.29
37264542--37264674	56	2.4	56	88	0	194	63	9	26	0	1.29
37264589--37264674	19	4.6	19	68	13	52	65	8	25	1	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204