genome.fa.s26.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  174  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51729199--51729376	98	1.9	93	83	5	230	33	6	15	44	1.72
51734947--51735040	48	2.0	48	87	8	138	40	27	12	19	1.88
51737461--51737554	48	2.0	48	85	8	129	41	27	11	19	1.86
51741272--51741326	21	2.6	21	85	0	74	30	30	7	30	1.85
51743190--51743293	54	2.0	54	84	5	142	30	6	15	47	1.71
51743315--51743368	19	2.8	19	83	5	63	20	3	5	70	1.23
51745181--51745215	18	1.9	18	88	0	52	40	8	0	51	1.33
51745220--51745292	30	2.5	30	76	8	71	52	5	0	42	1.24
51746829--51746918	45	2.0	44	89	2	135	32	4	28	34	1.77
51746829--51746935	45	2.5	43	83	8	132	33	3	29	32	1.75
51747063--51747130	16	4.2	16	74	20	54	54	1	0	44	1.09
51747083--51747130	18	2.8	18	74	22	50	56	0	0	43	0.99
51747072--51747113	15	2.9	15	82	10	52	52	0	0	47	1.00
51747203--51747236	17	2.0	17	88	11	52	52	0	2	44	1.16
51747278--51747338	28	2.2	28	85	5	81	50	3	0	45	1.17
51747253--51747565	91	3.4	91	93	1	511	46	4	3	45	1.40
51747219--51747564	47	7.6	44	67	17	147	47	4	3	44	1.39
51753568--51753601	14	2.4	14	85	5	50	38	0	23	38	1.55
51754303--51754346	24	2.0	23	86	13	65	43	2	4	50	1.35
51754301--51754354	24	2.2	25	75	24	62	38	1	3	55	1.28
51757237--51757292	27	2.1	27	82	0	67	37	14	1	46	1.55
51762222--51762262	21	2.0	21	90	0	64	29	21	29	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51765483--51765597	37	3.0	38	79	6	126	67	0	30	0	1.02
51765565--51765628	25	2.5	26	85	9	80	76	1	21	0	0.87
51765487--51765626	18	7.9	17	69	17	65	70	0	27	0	0.97
51766121--51766697	158	3.6	155	74	11	483	51	7	11	29	1.64
51765957--51766731	316	2.4	320	89	3	1165	49	7	11	30	1.67
51771907--51772022	37	2.8	41	72	16	96	52	10	5	31	1.57
51772315--51772378	27	2.4	27	83	0	83	15	31	31	21	1.95
51772848--51773281	223	2.0	222	85	4	588	35	12	18	33	1.88
51774062--51774120	28	2.1	28	96	0	109	37	10	20	32	1.86
51774950--51775119	7	24.1	7	72	8	58	20	0	31	48	1.49
51774992--51775119	35	3.7	35	78	6	125	19	0	32	48	1.49
51775148--51775237	35	2.6	35	83	3	101	18	0	40	41	1.51
51775177--51775352	21	8.0	20	68	20	86	22	1	36	39	1.64
51775271--51775338	7	9.6	7	79	3	73	23	0	38	38	1.55
51775177--51775336	14	11.4	14	72	10	85	23	1	35	40	1.63
51777699--51777851	66	2.4	65	86	3	209	35	2	11	50	1.53
51778208--51778330	18	6.9	18	71	12	101	45	17	0	37	1.48
51778247--51778604	9	38.9	9	69	15	130	47	17	0	34	1.54
51778413--51778449	17	2.2	17	100	0	74	54	5	0	40	1.24
51778359--51778492	72	1.9	72	89	6	209	47	16	0	35	1.47
51778445--51778604	43	3.6	43	89	5	232	47	18	0	33	1.49
51780315--51780340	12	2.2	12	100	0	52	34	7	26	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51784293--51784576	43	6.5	43	76	6	248	26	17	23	32	1.96
51784635--51784677	22	2.0	22	85	0	59	44	18	18	18	1.87
51785390--51785448	29	2.1	28	81	9	66	37	20	1	40	1.63
51794618--51794684	34	1.9	35	87	3	100	44	14	8	31	1.76
51797598--51797837	48	4.7	50	78	6	191	23	26	21	28	1.99
51799124--51799179	25	2.2	26	87	6	80	66	7	10	16	1.44
51819551--51819581	2	15.5	2	93	0	53	48	48	3	0	1.17
51826365--51826422	27	2.3	24	82	11	64	20	25	6	46	1.75
51829154--51829203	26	1.9	26	87	0	73	52	2	0	46	1.12
51830402--51830473	30	2.4	30	97	0	135	25	23	25	26	2.00
51830798--51830848	9	5.7	9	88	4	59	29	11	17	41	1.85
51830771--51830856	27	3.2	26	76	14	84	30	10	18	40	1.84
51830825--51830856	9	3.6	9	95	0	55	31	9	21	37	1.85
51830899--51830932	13	2.6	13	100	0	68	32	29	8	29	1.87
51831060--51831092	7	4.7	7	100	0	66	15	0	69	15	1.19
51831286--51831330	21	2.1	21	84	8	56	42	0	35	22	1.54
51831366--51831402	9	4.1	9	92	0	56	27	10	16	45	1.80
51831932--51831982	13	3.8	13	78	2	57	25	5	5	62	1.41
51835367--51835461	49	1.9	49	86	0	136	40	8	12	38	1.74
51835647--51835688	22	2.0	22	85	4	59	64	2	0	33	1.07
51841641--51841758	3	40.3	3	69	21	65	62	5	3	28	1.32
51841639--51841682	20	2.1	21	87	4	63	72	2	2	22	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51842397--51842432	13	2.8	13	86	0	54	75	5	19	0	1.00
51842393--51842448	20	2.9	18	77	12	58	71	7	21	0	1.09
51842974--51843016	15	2.8	15	85	3	50	23	0	2	74	0.93
51845545--51845689	50	2.9	50	85	0	200	28	22	27	21	1.99
51853649--51853832	32	5.8	32	86	0	233	41	17	20	20	1.91
51853641--51853838	64	3.1	64	87	0	279	39	19	19	20	1.92
51853648--51853832	96	1.9	96	89	0	289	41	17	20	21	1.91
51857523--51857553	16	1.9	16	93	0	53	41	0	3	54	1.16
51857544--51857588	19	2.4	19	80	0	54	44	2	4	48	1.35
51858665--51858689	2	12.5	2	100	0	50	0	48	0	52	1.00
51859845--51859882	12	3.1	13	85	11	53	68	0	7	23	1.16
51860189--51860255	35	1.9	35	90	3	109	32	10	11	44	1.75
51861600--51861669	27	2.6	27	80	8	79	50	20	4	25	1.66
51865220--51865245	13	2.0	13	100	0	52	46	15	15	23	1.83
51865344--51865375	16	2.0	16	100	0	64	56	6	31	6	1.49
51875359--51875669	39	8.0	39	85	1	354	17	18	29	35	1.93
51887083--51887118	13	2.8	13	95	4	65	19	0	0	80	0.71
51891757--51892032	44	6.0	44	69	18	159	35	19	16	28	1.93
51891777--51892086	94	3.3	93	83	4	381	36	18	16	28	1.93
51892555--51892704	50	3.1	49	68	18	143	29	18	22	30	1.97
51892776--51892859	44	1.9	44	87	0	123	36	14	17	30	1.90
51892094--51892829	94	7.9	94	79	3	678	33	17	18	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51892130--51892891	374	2.0	374	81	5	869	33	17	18	30	1.94
51893938--51893971	17	2.1	17	88	5	52	50	0	17	32	1.47
51894845--51894940	42	2.3	42	90	0	147	38	9	25	27	1.86
51898568--51898634	9	7.4	9	82	0	80	26	8	22	41	1.83
51898568--51898634	18	3.7	18	87	0	89	26	8	22	41	1.83
51899248--51899276	5	5.8	5	100	0	58	20	0	0	79	0.74
51899458--51899639	43	4.2	44	75	15	173	28	28	17	25	1.98
51899952--51899981	15	2.0	15	93	0	51	16	33	0	50	1.46
51899942--51899977	18	2.0	18	88	0	54	16	33	0	50	1.46
51899942--51899968	6	4.5	6	100	0	54	18	33	0	48	1.49
51904316--51904417	47	2.1	47	92	1	168	44	0	7	48	1.32
51904412--51904454	18	2.4	18	88	7	61	13	4	0	81	0.84
51904908--51904948	7	5.7	7	82	5	55	39	34	0	26	1.57
51904908--51904948	21	1.9	22	95	5	75	39	34	0	26	1.57
51905144--51905212	29	2.4	29	80	4	77	34	42	1	21	1.62
51905219--51905261	17	2.6	17	89	7	63	41	27	0	30	1.56
51905252--51905288	19	1.9	19	94	0	65	40	27	0	32	1.57
51905723--51905896	73	2.4	73	96	0	312	25	25	19	28	1.99
51905796--51906351	114	4.9	114	90	0	871	27	24	19	28	1.98
51905624--51906010	187	2.1	187	91	0	623	27	25	19	27	1.99
51907256--51907280	13	1.9	13	100	0	50	20	8	0	72	1.10
51907797--51907823	13	2.1	13	100	0	54	40	14	22	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51907858--51907891	14	2.5	14	90	4	52	50	32	0	17	1.47
51909696--51910007	106	3.0	106	81	5	364	45	19	12	22	1.83
51912096--51912131	11	3.4	11	88	7	56	69	0	0	30	0.89
51917385--51917413	4	7.2	4	100	0	58	24	0	0	75	0.80
51925171--51925234	29	2.2	29	88	5	94	39	1	25	34	1.65
51925267--51925305	18	2.2	18	85	0	51	30	5	7	56	1.49
51926948--51926974	4	6.8	4	100	0	54	22	0	0	77	0.76
51930750--51930776	4	6.8	4	100	0	54	22	0	0	77	0.76
51933375--51933441	34	1.9	35	84	3	91	32	8	13	44	1.75
51933519--51933570	18	2.7	20	74	17	56	36	3	0	59	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204