genome.fa.s26.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  133  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40967644--40967717	34	2.2	34	82	4	87	28	21	22	27	1.99
40968177--40968317	27	5.2	27	84	8	180	19	18	20	41	1.91
40968151--40968317	54	3.1	53	78	16	157	20	18	20	40	1.92
40968166--40968317	81	1.9	81	84	5	209	21	17	21	40	1.92
40969385--40969444	22	2.7	22	82	10	77	38	11	26	23	1.89
40972964--40973000	17	2.2	18	90	9	60	48	29	0	21	1.50
40973520--40973592	22	3.5	21	68	22	55	15	5	19	60	1.54
40974192--40974296	51	2.1	51	94	0	183	27	10	27	34	1.90
40977768--40977797	7	4.3	7	100	0	60	26	0	16	56	1.40
40984614--40984650	19	1.9	19	88	0	56	59	5	0	35	1.20
40984618--40984682	21	3.3	19	78	16	60	69	3	3	24	1.17
40986917--40986963	24	2.0	23	83	4	58	29	2	0	68	1.02
41000378--41000437	28	2.1	28	100	0	120	30	25	13	31	1.93
41003932--41004027	3	30.0	3	76	12	59	62	4	5	28	1.35
41005456--41005982	129	4.1	129	88	1	675	28	20	20	30	1.98
41005472--41005980	44	11.8	44	68	10	228	28	20	20	30	1.98
41005469--41005982	258	2.0	258	88	3	757	28	21	20	30	1.98
41006357--41006614	100	2.6	100	83	3	313	26	24	20	28	1.99
41006125--41006782	360	1.8	364	84	3	916	26	25	20	27	1.99
41006704--41006810	50	2.1	48	78	9	115	25	26	23	25	2.00
41011840--41011939	3	31.3	3	75	15	51	62	4	6	28	1.37
41016194--41016252	29	2.0	30	83	3	75	32	3	11	52	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41016172--41016252	31	2.7	29	78	5	90	35	3	9	50	1.53
41026230--41026317	40	2.2	39	84	10	106	26	18	27	28	1.98
41026248--41026357	40	2.8	40	84	2	132	30	20	23	24	1.98
41026248--41026370	40	3.1	40	77	6	106	30	21	22	25	1.98
41026425--41026533	40	2.7	39	80	14	116	27	27	21	23	1.99
41026835--41027037	7	28.4	7	68	11	81	22	1	30	45	1.62
41026840--41027087	14	17.4	14	68	11	92	21	1	33	43	1.61
41026882--41027040	72	2.2	72	94	0	273	22	1	32	43	1.61
41026989--41027075	21	4.1	21	68	12	52	18	0	40	41	1.50
41027018--41027087	7	9.9	7	75	3	50	18	0	38	42	1.51
41027677--41028089	114	3.6	115	74	5	329	26	15	22	35	1.93
41027654--41028089	229	1.9	228	79	3	491	27	14	21	36	1.93
41028535--41028573	20	2.0	20	84	0	51	12	10	28	48	1.74
41033188--41033625	43	10.2	43	81	4	270	27	17	25	29	1.97
41033212--41033607	86	4.7	85	84	4	512	25	16	26	31	1.97
41044197--41044253	28	2.0	28	96	0	105	29	15	10	43	1.80
41044443--41044481	16	2.4	16	91	0	60	38	5	28	28	1.78
41044464--41044551	45	2.0	44	84	6	115	30	3	27	38	1.73
41044664--41044797	57	2.3	56	82	7	144	51	4	1	42	1.31
41045366--41045456	46	2.0	46	93	0	155	48	5	2	43	1.38
41046282--41046316	4	9.0	4	93	6	63	74	0	0	25	0.82
41046620--41046715	31	3.1	31	90	3	156	43	14	10	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41052221--41052338	44	2.7	44	96	1	211	8	15	11	65	1.47
41052502--41052565	15	4.5	15	76	18	50	70	0	4	25	1.06
41052530--41052564	4	9.0	4	93	6	63	74	0	0	25	0.82
41053512--41053541	13	2.3	13	100	0	60	43	6	10	40	1.64
41057718--41057756	14	2.8	13	81	11	51	76	0	12	10	1.01
41059904--41060053	75	2.0	75	96	0	273	34	19	20	25	1.96
41063194--41063312	40	3.0	39	80	7	141	37	20	18	23	1.94
41063363--41063691	41	8.0	41	85	2	392	23	20	27	29	1.99
41064643--41064687	14	3.1	15	87	9	67	17	0	48	33	1.48
41064646--41064685	7	5.7	7	85	8	55	12	0	55	32	1.38
41064645--41064692	14	3.4	14	81	16	55	14	0	50	35	1.44
41065769--41065801	17	1.9	17	100	0	66	48	9	24	18	1.76
41067809--41068235	23	18.7	23	76	10	349	30	6	23	39	1.80
41067840--41068209	137	2.7	137	94	0	632	29	6	24	39	1.80
41067800--41068230	160	2.7	160	82	7	475	30	6	23	39	1.80
41068838--41069130	43	6.8	43	86	0	388	21	17	32	29	1.96
41071182--41071242	26	2.2	29	80	13	76	22	16	8	52	1.70
41074946--41074981	18	2.0	19	89	10	58	19	16	5	58	1.58
41076907--41076931	13	1.9	13	100	0	50	88	0	0	12	0.53
41090584--41090822	43	5.6	43	65	19	149	30	22	22	25	1.99
41090553--41090815	87	3.1	87	68	18	260	30	22	23	23	1.99
41090533--41090892	171	2.1	175	90	3	570	30	22	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41090581--41090894	87	3.6	85	68	15	214	30	22	21	24	1.99
41095504--41095550	19	2.5	18	86	6	58	27	21	0	51	1.48
41095525--41095610	43	2.0	43	88	4	129	22	20	1	55	1.50
41098457--41098484	7	4.0	7	100	0	56	71	0	0	28	0.86
41099179--41099253	32	2.3	33	80	11	91	34	4	1	60	1.24
41109745--41109785	15	2.6	16	80	7	57	63	7	0	29	1.21
41110127--41110183	6	9.7	6	84	3	62	49	1	5	43	1.35
41113745--41113945	100	2.0	100	93	1	341	38	18	6	36	1.78
41116404--41116432	12	2.5	12	94	5	51	44	6	0	48	1.29
41117259--41117311	26	2.0	26	88	0	79	64	3	7	24	1.37
41117624--41117726	50	2.1	50	90	0	161	51	4	11	32	1.59
41119723--41119877	43	3.7	43	83	3	181	29	14	25	30	1.95
41125490--41125553	25	2.6	25	94	0	110	15	29	10	43	1.81
41127036--41127075	20	2.0	20	90	0	62	27	10	12	50	1.72
41127021--41127087	34	1.9	35	90	3	109	31	8	13	46	1.74
41127601--41127650	21	2.4	21	82	0	64	28	18	10	44	1.81
41131063--41131124	24	2.5	24	81	2	61	35	9	19	35	1.85
41131505--41131586	39	2.1	39	86	0	110	41	10	24	23	1.86
41131520--41131603	39	2.2	39	82	0	96	44	14	19	22	1.86
41134384--41134437	14	4.0	13	74	9	54	70	1	7	20	1.21
41142661--41142691	16	2.0	15	93	6	53	22	12	32	32	1.92
41148070--41148300	39	5.9	39	81	4	232	19	22	17	41	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41148077--41148356	117	2.4	115	80	5	276	21	22	16	40	1.91
41148420--41148626	98	2.1	98	87	1	290	33	21	12	32	1.90
41149273--41149381	50	2.2	49	80	9	125	24	36	0	37	1.62
41151135--41151276	49	2.9	49	78	0	140	28	25	19	26	1.98
41152129--41152181	23	2.3	23	86	0	70	47	0	30	22	1.52
41152300--41152332	16	2.0	17	94	5	59	36	0	27	36	1.57
41156935--41157127	105	1.8	105	93	0	332	40	11	15	32	1.83
41171720--41172110	44	8.5	45	70	12	224	31	19	20	27	1.97
41171803--41172028	52	4.7	51	68	16	149	31	18	21	29	1.96
41171662--41172068	140	2.9	140	95	0	715	31	18	21	28	1.97
41180539--41180585	19	2.3	20	85	7	60	27	2	6	63	1.30
41180701--41180739	21	1.9	20	89	5	60	61	5	2	30	1.31
41181645--41181721	14	5.0	15	71	20	52	42	14	9	33	1.77
41181661--41181700	20	2.0	20	90	0	62	50	12	10	27	1.72
41181649--41181715	34	1.9	35	90	3	109	46	13	8	31	1.74
41181973--41182072	49	2.0	49	92	0	164	30	20	20	30	1.97
41182643--41182704	20	3.2	19	81	4	72	35	25	12	25	1.92
41182679--41182719	19	2.2	19	86	8	57	43	29	9	17	1.80
41198590--41198622	17	1.9	17	88	11	50	27	0	3	69	1.03
41198599--41198661	30	2.1	30	90	0	99	26	3	12	57	1.51
41198785--41198818	11	3.0	12	87	12	54	67	0	0	32	0.91
41199902--41200044	66	2.1	67	90	1	234	36	13	9	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41199797--41199991	104	1.9	105	89	1	302	33	10	12	43	1.77
41202184--41202313	27	4.8	27	80	3	127	29	16	24	29	1.97
41206071--41206136	23	2.9	23	93	0	114	46	36	7	9	1.64
41206248--41206290	17	2.5	17	82	14	61	34	23	0	41	1.55
41207069--41207099	16	1.9	16	93	0	53	0	19	6	74	1.03
41208060--41208102	21	2.0	21	95	0	77	25	18	18	37	1.94
41214077--41214244	87	1.9	90	82	12	215	29	27	18	24	1.98
41214077--41214244	45	3.8	45	83	11	215	29	27	18	24	1.98
41217101--41217205	43	2.4	43	87	1	147	32	24	16	26	1.96
41217324--41217455	31	4.3	31	82	6	171	43	15	8	33	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204