genome.fa.s26.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  144  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44112138--44112185	21	2.3	19	77	19	51	47	0	16	35	1.47
44129705--44129742	19	2.0	19	100	0	76	36	10	15	36	1.82
44134362--44134439	41	1.9	41	81	5	95	21	24	11	42	1.86
44136450--44136555	20	5.3	20	67	8	72	23	23	18	33	1.97
44136447--44136585	40	3.5	40	83	0	179	23	22	18	35	1.96
44141505--44141556	20	2.5	22	81	12	72	23	25	38	13	1.91
44141505--44141564	20	2.8	21	75	14	61	21	23	38	16	1.93
44150302--44150345	24	1.9	22	100	0	70	43	20	9	27	1.82
44155153--44155209	28	2.0	29	96	3	107	61	0	17	21	1.35
44164951--44165050	33	3.0	33	91	0	146	32	21	19	28	1.97
44181803--44182380	44	13.2	45	78	7	548	27	15	25	30	1.96
44181798--44182213	132	3.1	132	94	1	733	27	15	25	31	1.96
44181801--44182380	177	3.3	173	83	5	622	27	15	26	31	1.96
44182032--44182388	125	2.8	126	82	4	344	26	16	25	31	1.97
44187243--44187275	14	2.2	16	89	10	52	81	0	9	9	0.87
44192592--44192657	34	1.9	34	100	0	132	53	6	16	24	1.66
44194434--44194513	35	2.3	34	78	20	85	40	2	5	52	1.37
44198867--44198925	30	1.9	31	86	3	84	49	1	20	28	1.59
44199337--44199378	20	2.0	22	90	9	70	71	19	4	4	1.22
44206924--44206951	3	9.3	3	100	0	56	32	0	0	67	0.91
44209375--44209441	23	2.8	25	70	9	75	28	23	31	16	1.96
44210974--44211017	19	2.5	17	82	13	54	65	2	4	27	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44211016--44211054	18	2.1	19	90	4	62	53	2	0	43	1.14
44211016--44211066	18	2.8	18	82	11	61	50	1	1	45	1.24
44211269--44211307	19	2.1	19	86	13	55	30	2	0	66	1.05
44217346--44217404	3	20.7	3	79	10	70	35	3	0	61	1.13
44217512--44217563	19	2.9	19	80	8	65	42	7	0	50	1.31
44217850--44217939	46	1.9	47	84	2	119	38	11	1	48	1.46
44221535--44221601	14	4.6	14	68	5	53	80	5	11	1	0.95
44222993--44223902	44	20.7	44	67	15	280	29	19	24	26	1.98
44222995--44223231	131	1.8	131	82	4	309	30	19	24	25	1.98
44222993--44223378	175	2.2	175	87	3	546	31	18	23	26	1.98
44223035--44223417	175	2.2	175	86	3	495	31	18	22	26	1.97
44223168--44223851	132	5.2	132	89	1	980	29	19	24	26	1.98
44223826--44224025	44	4.6	44	76	7	178	32	21	21	26	1.98
44223826--44224069	44	5.6	42	75	6	177	31	19	21	27	1.97
44225636--44225692	23	2.5	23	82	5	62	31	3	5	59	1.36
44225712--44225769	28	2.1	28	90	0	89	34	10	8	46	1.69
44225710--44225840	69	1.9	68	80	12	151	36	8	4	50	1.53
44226110--44226199	46	1.9	47	84	2	119	38	11	1	48	1.46
44226209--44226236	4	7.0	4	100	0	56	25	0	0	75	0.81
44228316--44228343	9	3.1	9	100	0	56	32	21	10	35	1.88
44236294--44236372	40	2.0	40	100	0	158	27	10	16	45	1.79
44240187--44240231	23	2.0	23	82	8	56	55	2	2	40	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44240212--44240319	49	2.2	48	85	6	146	50	3	7	37	1.48
44240240--44240347	48	2.2	47	79	12	128	47	3	7	41	1.49
44241573--44241599	14	1.9	14	100	0	54	88	0	7	3	0.61
44243162--44243260	36	2.6	38	80	15	114	40	1	26	32	1.63
44243393--44243484	39	2.4	39	82	7	109	20	21	28	29	1.98
44247776--44247821	22	2.1	23	84	8	60	19	6	2	71	1.18
44249320--44249395	15	5.1	15	74	16	52	34	3	2	59	1.30
44252505--44252554	21	2.3	22	82	10	66	26	12	6	56	1.58
44252625--44252650	12	2.2	12	100	0	52	19	7	15	57	1.62
44253320--44253353	18	1.9	17	94	5	59	82	2	14	0	0.79
44253420--44253458	7	5.7	7	81	6	53	76	2	10	10	1.10
44253419--44253458	13	2.9	14	81	3	55	77	2	10	10	1.08
44254940--44255779	88	9.5	88	87	1	1087	28	26	23	21	1.99
44255074--44255300	44	5.2	44	62	8	111	27	28	22	21	1.99
44255487--44255630	45	3.2	44	69	3	119	27	27	25	20	1.99
44255514--44255657	44	3.3	44	71	3	146	24	31	22	20	1.98
44255186--44256061	176	5.0	173	80	7	619	28	25	24	22	1.99
44255911--44256195	130	2.2	131	94	0	491	28	20	25	25	1.99
44255824--44256276	217	2.1	218	93	2	777	27	21	25	25	1.99
44256041--44256289	87	2.9	87	93	1	428	28	20	25	24	1.99
44255824--44256309	44	11.2	44	71	8	339	27	22	24	25	1.99
44257682--44257747	15	4.7	15	71	17	52	34	3	1	60	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44258197--44258228	14	2.3	15	84	15	50	37	0	0	62	0.95
44258444--44258490	13	3.8	12	78	10	51	21	2	6	70	1.20
44260654--44260700	12	3.8	12	75	13	51	48	0	2	48	1.13
44263229--44263268	18	2.4	17	87	8	55	60	5	5	30	1.40
44263290--44263333	3	14.7	3	85	0	61	61	2	4	31	1.28
44264473--44264518	24	1.9	24	86	8	67	28	0	10	60	1.30
44265752--44265798	20	2.3	20	92	0	76	53	10	10	25	1.68
44269281--44269330	25	2.0	26	96	4	93	46	4	0	50	1.20
44276062--44276089	14	2.0	14	100	0	56	21	21	14	42	1.88
44278562--44278604	22	2.0	22	90	0	68	9	13	27	48	1.73
44278684--44278860	42	4.2	42	82	9	175	31	20	21	27	1.98
44279281--44279319	12	3.2	12	92	0	51	2	35	17	43	1.63
44284809--44285043	9	27.8	9	73	12	149	31	2	20	45	1.65
44284810--44285086	25	11.0	25	73	11	117	31	2	18	46	1.64
44284836--44284919	34	2.5	34	94	0	141	28	5	21	44	1.76
44284798--44284999	16	12.6	16	71	15	107	30	2	20	46	1.64
44284904--44284999	41	2.3	41	85	7	124	31	1	19	47	1.56
44284931--44285038	41	2.6	41	86	2	135	33	1	16	48	1.57
44285020--44285089	24	2.8	25	78	8	70	34	1	12	51	1.49
44285319--44285371	23	2.2	23	83	6	61	50	5	3	39	1.44
44286438--44286554	41	2.9	41	88	3	166	34	4	38	23	1.74
44286529--44286580	24	2.2	24	82	6	61	36	3	38	21	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44287113--44287165	22	2.5	22	90	3	81	39	22	3	33	1.72
44287175--44287222	21	2.3	21	85	7	62	41	33	2	22	1.66
44287638--44288089	228	2.0	221	88	7	662	30	19	18	31	1.96
44289591--44289701	37	3.0	37	78	13	115	41	2	3	52	1.33
44294551--44294923	183	2.0	183	81	5	432	32	27	10	30	1.90
44296654--44296720	27	2.5	26	76	7	71	19	13	2	64	1.41
44308178--44308377	43	4.7	41	77	7	186	34	25	18	22	1.96
44308152--44308374	42	5.3	42	75	8	193	35	25	17	22	1.95
44308152--44308377	85	2.7	85	88	0	319	34	25	16	22	1.95
44315667--44315979	85	3.7	85	93	0	502	34	26	16	21	1.95
44315667--44315976	42	7.3	42	77	9	308	35	26	17	21	1.95
44315953--44316005	26	2.0	26	96	0	97	24	33	22	18	1.97
44319961--44320006	23	2.0	23	100	0	92	30	21	8	39	1.84
44327729--44327773	22	2.0	22	83	8	56	37	0	0	62	0.96
44343972--44344147	7	24.7	7	69	10	52	43	32	2	20	1.66
44343951--44344152	14	14.2	14	69	8	95	46	31	2	20	1.64
44344197--44344409	7	29.9	7	65	12	69	46	32	1	19	1.61
44344293--44344346	15	3.8	15	83	9	69	46	38	0	14	1.45
44344293--44344351	22	2.8	21	82	5	66	47	35	0	16	1.47
44344780--44345025	41	6.0	41	77	3	235	29	28	20	21	1.98
44344791--44345025	123	1.9	122	80	6	269	29	27	20	21	1.98
44347255--44347334	40	2.0	40	90	2	124	20	23	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44347256--44347367	41	2.8	39	83	6	136	19	23	25	31	1.98
44347464--44347514	26	2.0	26	84	0	66	58	5	11	23	1.55
44347805--44347830	7	3.7	7	100	0	52	15	0	53	30	1.42
44347805--44347838	14	2.4	14	90	0	50	20	0	50	29	1.49
44347866--44348017	80	1.9	77	88	4	223	32	0	22	44	1.58
44348092--44348136	7	6.4	7	80	10	56	11	0	48	40	1.39
44348093--44348160	28	2.4	28	82	0	73	19	0	41	39	1.51
44348777--44348821	21	2.2	20	88	11	65	80	0	6	13	0.91
44350336--44350398	33	1.9	33	93	0	108	20	0	14	65	1.27
44351234--44351266	16	2.1	16	100	0	66	51	0	18	30	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204