genome.fa.s26.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  135  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41366622--41366679	3	19.0	3	85	3	80	60	0	3	36	1.14
41368363--41368542	95	1.9	94	91	1	297	31	23	16	28	1.96
41368730--41369199	88	5.3	88	92	0	771	24	25	23	26	2.00
41370431--41370481	7	7.0	7	85	12	68	13	13	0	72	1.12
41370440--41370482	8	5.6	8	94	5	72	11	11	0	76	1.02
41370431--41370481	22	2.3	22	93	6	86	13	13	0	72	1.12
41371255--41371301	11	4.1	11	79	17	51	0	17	0	82	0.66
41371265--41371300	10	3.5	11	88	11	58	0	13	0	86	0.58
41371257--41371301	23	2.0	22	87	12	65	0	15	0	84	0.62
41371260--41371301	11	3.9	10	87	12	57	0	14	0	85	0.59
41371259--41371288	8	3.6	8	91	8	51	0	13	0	86	0.57
41371260--41371300	20	2.0	22	90	9	68	0	14	0	85	0.60
41371258--41371307	23	2.2	23	82	13	59	2	16	2	80	0.91
41372517--41372542	13	2.0	13	100	0	52	15	23	23	38	1.92
41375468--41375509	18	2.4	17	84	11	57	30	9	7	52	1.61
41375821--41375862	20	2.2	20	83	8	52	50	0	4	45	1.23
41375952--41375989	3	13.0	3	88	5	60	65	0	2	31	1.06
41375953--41375986	17	2.0	17	94	0	59	67	0	2	29	1.05
41375952--41375990	20	2.0	20	94	0	69	66	0	2	30	1.05
41378188--41378339	83	1.8	82	90	1	241	37	5	12	44	1.65
41380754--41380794	18	2.3	19	83	12	59	24	9	0	65	1.22
41380826--41380888	30	2.1	30	93	0	108	38	9	0	52	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41380834--41380885	15	3.5	15	72	0	50	40	11	0	48	1.40
41380817--41380870	3	18.0	3	86	0	54	33	7	1	57	1.37
41383113--41383457	46	7.6	46	93	1	572	28	21	15	34	1.94
41384945--41385005	3	20.3	3	80	6	70	63	3	1	31	1.20
41384944--41384988	16	2.9	16	90	3	65	62	2	2	33	1.20
41386419--41386911	100	4.9	100	89	0	709	22	24	23	30	1.99
41386481--41386856	50	7.5	50	70	0	248	22	23	22	31	1.98
41386532--41386906	50	7.5	50	69	9	219	21	24	23	30	1.99
41386934--41388221	88	14.6	88	88	2	1748	24	25	21	27	1.99
41388853--41388928	37	2.1	37	97	0	143	28	26	6	38	1.81
41389520--41389568	22	2.4	19	83	16	62	14	8	0	77	0.98
41389522--41389569	7	6.7	7	79	11	53	12	8	0	79	0.94
41389530--41389569	20	2.0	20	90	5	62	12	7	0	80	0.91
41389522--41389569	13	3.4	13	82	8	51	12	8	0	79	0.94
41390063--41390165	1	103.0	1	74	0	80	9	1	1	86	0.73
41390078--41390145	7	9.7	7	100	0	136	13	0	0	86	0.56
41390063--41390148	21	4.2	20	89	4	120	10	0	2	87	0.64
41394889--41394958	3	23.3	3	79	5	79	62	2	2	31	1.24
41404464--41404536	30	2.3	33	77	13	82	34	1	4	60	1.24
41404512--41404550	5	7.6	5	83	16	53	38	2	0	58	1.12
41404485--41404550	16	4.4	15	82	17	68	36	1	1	60	1.15
41413404--41413729	50	6.5	50	69	2	206	27	20	26	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41413422--41413729	100	3.1	100	87	3	424	27	21	25	25	1.99
41413771--41413975	82	2.5	82	83	3	225	33	15	20	31	1.93
41415159--41415210	3	18.0	3	77	15	56	36	0	1	61	1.07
41415156--41415213	8	6.9	8	78	18	64	36	0	1	62	1.06
41415156--41415207	23	2.2	23	86	13	70	36	0	1	61	1.07
41419375--41419468	48	2.0	48	84	0	125	38	14	14	31	1.87
41421453--41421509	25	2.4	25	81	18	70	29	5	3	61	1.35
41421453--41421492	22	1.9	21	90	10	64	25	5	2	67	1.23
41424752--41425429	44	15.8	44	69	14	251	27	24	19	28	1.99
41424753--41425425	216	3.1	216	89	2	993	27	24	19	28	1.99
41440510--41440549	12	3.1	14	76	23	52	47	0	0	52	1.00
41441700--41441757	30	1.9	30	92	0	98	17	32	31	18	1.94
41442312--41442342	6	5.2	6	100	0	62	16	0	0	83	0.64
41443961--41444156	97	2.0	98	93	1	340	29	9	23	37	1.86
41449003--41449119	40	2.9	40	94	0	198	32	15	29	22	1.95
41449067--41449880	112	7.3	112	95	1	1391	25	18	29	26	1.98
41449067--41449880	223	3.6	223	95	0	1403	25	18	29	26	1.98
41451556--41451756	84	2.4	84	92	0	330	32	19	18	29	1.96
41452958--41452997	11	3.7	11	96	3	73	37	10	25	27	1.88
41454340--41454716	17	21.6	17	70	22	214	44	11	1	42	1.51
41454357--41454638	40	6.7	40	68	25	179	43	11	1	42	1.50
41454331--41454480	57	2.6	57	95	2	266	44	11	1	42	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41454352--41454581	97	2.3	100	90	7	378	43	11	1	43	1.50
41454457--41454749	57	5.0	57	90	6	469	43	11	2	43	1.52
41454457--41454732	61	4.7	61	92	5	469	43	11	1	43	1.51
41454721--41454765	13	3.5	13	87	0	72	40	6	2	51	1.41
41454457--41454749	118	2.5	118	97	0	550	43	11	2	43	1.52
41454912--41455061	73	2.1	73	100	0	300	50	1	6	41	1.37
41454913--41455029	38	3.2	38	67	16	118	53	1	7	36	1.40
41455135--41455365	26	9.4	25	88	7	323	46	20	0	32	1.51
41455117--41455396	18	15.6	18	67	26	125	46	19	0	34	1.50
41455357--41455410	9	5.7	10	79	20	55	42	20	0	37	1.52
41460878--41460947	21	3.4	21	80	2	79	32	18	45	2	1.64
41461255--41461418	41	3.9	41	83	3	175	31	21	20	26	1.98
41461257--41461504	42	5.9	41	85	3	253	27	21	21	29	1.99
41463481--41463575	46	2.1	46	93	0	163	43	23	1	32	1.61
41466865--41466900	16	2.2	17	90	5	56	36	2	0	61	1.11
41473826--41473963	68	2.0	71	87	8	203	41	4	4	50	1.42
41478099--41479275	297	4.0	296	90	2	1814	34	17	21	25	1.95
41478093--41479271	588	2.0	593	91	1	1895	34	17	21	25	1.96
41484208--41484355	30	5.0	30	76	8	131	27	25	3	44	1.69
41484214--41484355	59	2.4	59	83	7	171	26	26	3	44	1.70
41484757--41484802	14	3.1	15	84	9	58	82	0	8	8	0.84
41489009--41489047	4	10.0	4	83	5	53	25	25	2	46	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41497383--41498057	77	8.9	76	81	4	668	26	17	21	34	1.95
41498555--41498685	29	4.5	29	75	4	120	31	20	0	47	1.56
41498561--41498691	58	2.2	59	86	5	185	28	22	1	47	1.61
41498710--41498770	30	2.0	30	100	0	122	55	13	9	21	1.66
41499128--41499181	5	11.2	5	75	15	51	75	0	24	0	0.80
41499128--41499184	22	2.7	21	84	10	71	77	0	22	0	0.77
41499128--41499175	16	2.8	18	87	9	66	77	0	22	0	0.78
41505114--41505251	66	2.1	65	84	8	172	15	25	17	42	1.88
41505311--41505335	13	1.9	13	100	0	50	16	28	24	32	1.96
41510615--41510639	7	3.6	7	100	0	50	40	16	12	32	1.84
41510688--41510827	9	16.0	9	77	12	132	32	0	20	47	1.50
41510688--41510804	36	3.3	36	85	7	159	33	0	19	47	1.50
41510719--41510829	43	2.6	43	88	7	163	30	0	20	48	1.50
41510755--41510827	34	2.1	34	87	9	105	28	0	21	49	1.50
41510915--41510941	13	2.1	13	100	0	54	37	11	0	51	1.37
41511970--41512015	23	2.1	22	84	8	58	45	8	19	26	1.79
41512056--41512086	12	2.6	12	94	0	53	19	45	0	35	1.51
41520563--41520682	41	2.9	41	79	0	141	18	25	16	40	1.91
41520830--41520892	31	2.1	31	90	3	101	41	20	12	25	1.88
41523606--41523641	18	2.1	18	89	5	56	58	0	0	41	0.98
41526437--41526476	19	2.1	19	90	0	62	57	10	0	32	1.32
41526983--41527023	21	2.0	20	85	4	55	31	4	0	63	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41527557--41527612	29	1.9	29	82	7	69	39	3	3	53	1.36
41528045--41528138	19	4.8	19	90	5	152	37	10	15	36	1.83
41528045--41528145	40	2.7	38	88	8	152	37	9	16	35	1.82
41528077--41528161	21	4.0	22	79	14	81	37	7	16	38	1.76
41528127--41528171	23	2.0	23	86	4	65	33	4	15	46	1.66
41528684--41528729	22	2.1	22	84	8	58	32	4	6	56	1.45
41528795--41528855	33	1.9	30	83	9	77	27	1	4	65	1.22
41529295--41529336	19	2.2	20	86	4	59	33	7	9	50	1.62
41529575--41529771	98	2.0	98	94	0	349	28	8	24	38	1.85
41535359--41535413	22	2.5	22	82	5	67	40	1	7	50	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204