genome.fa.s26.2.7.7.80.10.50.1000.199.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  199  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58906513--58906573	20	3.0	20	83	9	88	36	14	16	32	1.89
58907257--58907680	214	2.0	213	82	4	523	32	14	18	34	1.91
58907263--58907680	107	3.9	108	82	5	463	32	15	18	34	1.91
58909104--58909546	102	4.4	101	86	2	525	29	15	26	29	1.96
58909104--58909546	51	8.8	50	74	7	349	29	15	26	29	1.96
58910447--58910509	5	12.6	5	76	6	65	39	1	33	25	1.65
58910456--58910509	15	3.6	15	87	7	83	37	1	35	25	1.67
58914994--58915093	30	3.3	30	91	0	155	11	41	33	15	1.82
58915400--58915433	3	11.3	3	93	0	59	35	0	0	64	0.94
58915757--58915807	24	2.1	25	81	3	59	33	3	7	54	1.47
58917233--58917264	17	1.9	17	93	6	57	56	12	25	6	1.59
58918975--58919124	73	2.1	71	92	2	246	44	10	18	27	1.81
58919791--58919824	16	2.1	17	88	5	52	61	11	17	8	1.54
58922334--58922367	16	2.1	17	94	5	61	55	14	23	5	1.61
58924253--58924323	33	2.1	34	84	2	90	28	12	4	54	1.56
58917143--58927235	856	11.9	851	81	6	10501	32	19	17	30	1.95
58927626--58927769	29	4.9	29	81	10	143	33	20	5	40	1.75
58928080--58928132	21	2.6	21	85	5	65	69	15	13	1	1.27
58928265--58928318	25	2.3	23	87	9	81	72	0	25	1	0.95
58928274--58928321	16	2.8	16	81	12	51	72	0	25	2	0.95
58928267--58928322	27	2.2	25	87	6	76	71	0	26	1	0.96
58928800--58928839	20	2.0	21	90	5	64	40	17	5	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58929114--58929219	19	5.8	18	73	17	78	33	16	8	41	1.79
58929126--58929198	34	2.1	34	87	2	101	32	17	8	41	1.79
58929115--58929217	53	1.9	53	84	9	138	32	17	8	41	1.80
58929177--58929231	19	2.9	19	82	15	69	36	10	7	45	1.67
58929442--58929471	15	2.0	15	93	0	51	43	10	13	33	1.77
58929397--58929472	17	4.4	18	69	20	63	38	14	10	36	1.81
58929426--58929510	18	4.7	18	69	20	61	42	10	10	36	1.74
58929484--58929526	20	2.2	20	83	8	52	48	13	11	25	1.77
58929524--58929566	18	2.4	18	81	11	52	30	13	6	48	1.69
58929677--58929877	17	11.8	17	74	10	153	29	13	12	44	1.80
58929671--58929838	34	4.9	33	80	9	178	29	11	13	45	1.78
58929658--58929838	67	2.6	68	88	6	267	29	12	13	45	1.79
58930250--58933674	853	4.0	857	85	3	4478	31	19	18	30	1.95
58933404--58933437	16	2.1	17	88	5	52	61	11	17	8	1.54
58934060--58934138	20	4.2	20	67	18	60	46	10	7	35	1.66
58934099--58934220	19	6.5	19	72	15	83	42	9	10	36	1.73
58934068--58934156	35	2.5	35	84	14	103	47	10	8	33	1.69
58934135--58934188	21	2.6	22	80	11	69	35	11	14	38	1.82
58934175--58934210	17	2.2	17	90	5	56	47	11	5	36	1.63
58934135--58934233	21	5.0	21	70	22	61	41	9	11	38	1.72
58934192--58934233	22	2.0	20	86	9	57	45	7	7	40	1.59
58934259--58934372	17	6.3	17	71	13	75	41	10	14	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58934244--58934412	38	4.4	38	73	14	143	41	9	15	33	1.79
58934292--58934478	20	9.8	18	65	22	53	43	9	13	34	1.75
58935423--58935502	7	11.0	7	75	12	63	1	21	0	77	0.84
58935423--58935494	25	2.9	24	80	10	81	1	20	0	77	0.84
58935423--58935503	29	2.8	29	85	9	87	1	22	0	76	0.86
58935425--58935502	19	4.3	19	79	15	76	1	21	0	76	0.85
58935405--58935521	41	2.9	41	79	9	105	2	23	0	74	0.94
58935454--58935499	4	12.5	4	86	13	64	0	23	0	76	0.79
58935461--58935519	29	2.0	29	84	12	77	0	30	0	69	0.89
58935609--58935680	12	6.1	12	69	13	51	1	18	4	76	1.02
58935641--58935688	25	2.0	25	83	4	62	0	18	10	70	1.15
58936003--58936148	30	4.9	30	78	8	136	41	6	20	32	1.77
58936023--58936149	29	4.2	30	82	6	150	40	4	20	33	1.73
58936002--58936140	59	2.3	61	86	2	183	42	5	20	30	1.76
58936023--58936148	30	4.2	30	82	9	150	40	4	20	34	1.74
58936666--58936835	92	1.9	88	91	4	277	30	20	18	31	1.96
58936669--58936856	92	2.1	87	81	7	207	34	18	18	28	1.95
58936329--58937572	157	7.8	156	80	10	1132	34	20	17	28	1.95
58936666--58937572	80	11.3	86	79	12	647	34	20	17	28	1.95
58936329--58937572	75	15.7	81	80	9	1183	34	20	17	28	1.95
58938423--58938475	20	2.7	19	85	8	70	0	3	7	88	0.61
58938423--58938475	1	53.0	1	76	0	52	0	3	7	88	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58944515--58944734	17	12.8	17	72	13	130	45	12	11	30	1.77
58944516--58944712	33	5.8	33	73	8	166	47	11	11	29	1.75
58944514--58944740	67	3.3	68	80	12	259	44	11	11	32	1.76
58944829--58944883	15	3.3	17	78	14	53	41	9	14	34	1.77
58944823--58944876	18	3.1	17	80	17	58	48	9	14	27	1.75
58944865--58944914	20	2.5	20	87	9	66	34	10	10	46	1.71
58944911--58944997	18	4.9	18	70	14	65	40	10	13	35	1.79
58944920--58944964	15	2.7	17	80	13	58	35	11	11	42	1.76
58944920--58944987	15	4.1	16	73	16	57	38	11	14	35	1.83
58945037--58945239	18	11.2	18	71	15	123	45	10	14	29	1.78
58945111--58945215	17	5.8	18	71	16	74	43	9	16	30	1.79
58945037--58945239	34	5.6	34	71	13	131	45	10	14	29	1.78
58945145--58945293	71	2.1	70	79	13	162	42	12	14	30	1.82
58945993--58946045	14	3.9	14	73	14	56	1	26	0	71	0.96
58945998--58946051	25	2.3	23	87	9	81	1	25	0	72	0.95
58945995--58946053	14	4.3	14	70	16	52	1	25	0	72	0.93
58946176--58946227	21	2.6	21	84	6	63	1	13	15	69	1.28
58946551--58946712	30	5.4	29	77	8	128	43	3	19	33	1.67
58946568--58946703	30	4.6	29	77	8	130	44	2	19	33	1.63
58948248--58948304	3	18.3	3	78	10	53	36	3	1	57	1.26
58956263--58956295	3	11.0	3	87	12	50	0	66	30	3	1.06
58956338--58956371	3	11.3	3	100	0	68	32	32	0	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58957495--58957521	14	1.9	14	100	0	54	37	0	3	59	1.15
58957545--58957619	32	2.4	31	80	12	82	61	0	6	32	1.22
58957630--58957720	36	2.9	30	82	14	87	58	1	1	39	1.13
58957768--58957793	4	6.5	4	100	0	52	76	0	0	23	0.78
58964489--58964521	15	2.2	15	89	10	50	42	45	6	6	1.53
58965500--58965592	3	31.0	3	76	12	75	27	5	3	63	1.32
58965737--58965911	89	2.0	88	79	10	189	34	9	2	53	1.46
58978216--58978555	44	7.8	44	73	9	198	29	21	22	26	1.99
58978216--58978580	87	4.2	90	72	10	283	30	21	21	26	1.98
58979915--58980004	3	30.0	3	75	12	69	27	5	3	63	1.33
58980150--58980324	89	2.0	88	79	10	189	34	9	2	53	1.46
58981879--58981990	51	2.2	51	88	1	163	26	24	30	18	1.98
58985838--58985934	32	3.1	32	96	1	178	44	17	12	25	1.84
58985730--58986047	176	1.8	176	89	4	500	40	17	12	28	1.87
58987273--58987339	32	2.1	32	94	0	116	28	13	14	43	1.84
58987159--58987443	147	2.0	142	88	3	417	29	13	17	40	1.87
58989767--58989844	38	2.1	38	97	0	147	43	8	8	38	1.68
58997861--58998059	107	1.9	108	93	1	346	29	19	19	31	1.97
59005035--59006208	132	8.9	132	94	1	1960	26	15	25	31	1.96
59006274--59006425	40	3.8	40	86	6	225	30	25	20	23	1.98
59006269--59006441	82	2.1	83	94	1	303	34	24	18	22	1.96
59008515--59008713	107	1.9	108	93	1	346	29	20	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59010961--59011017	26	2.2	26	81	12	64	57	1	8	31	1.39
59011390--59011446	29	1.9	30	85	3	80	33	22	1	42	1.64
59011401--59011512	60	1.9	59	83	9	147	36	20	1	41	1.63
59012069--59012160	8	11.2	8	74	13	62	79	0	15	5	0.91
59012083--59012159	6	12.8	6	75	9	68	80	0	12	6	0.89
59012082--59012172	7	13.6	7	75	11	57	81	1	10	6	0.92
59012069--59012142	25	3.1	23	83	9	94	78	0	17	4	0.90
59012083--59012133	19	2.6	19	81	3	66	80	0	15	3	0.86
59012083--59012167	34	2.6	33	83	9	102	81	0	11	7	0.88
59012076--59012166	23	4.1	23	81	17	104	80	0	13	6	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204