genome.fa.s26.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  195  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57597657--57597689	17	1.9	18	88	11	52	42	12	0	45	1.41
57599665--57599710	22	2.1	21	88	4	65	47	34	2	15	1.57
57603779--57603852	25	3.0	24	77	15	62	52	4	1	41	1.28
57607326--57607359	2	17.0	2	87	0	50	2	2	47	47	1.32
57607316--57607359	14	3.1	14	86	0	61	4	6	45	43	1.51
57615045--57615083	21	1.9	20	84	5	51	10	5	15	69	1.34
57615903--57615981	31	2.6	30	76	5	79	39	10	11	39	1.75
57617286--57617366	40	2.0	40	100	0	162	30	22	14	32	1.94
57620605--57620685	38	2.1	38	97	0	153	46	14	2	35	1.58
57621395--57621466	35	2.1	35	100	0	144	44	13	13	27	1.82
57628973--57629025	19	2.8	20	80	5	65	33	0	1	64	1.05
57628973--57629023	10	5.3	10	81	6	61	31	0	1	66	1.03
57628955--57629023	29	2.4	29	85	0	93	34	0	5	59	1.21
57630990--57631050	32	1.9	32	100	0	122	37	13	14	34	1.85
57632628--57632823	98	2.0	98	100	0	392	21	11	16	51	1.75
57639789--57639835	20	2.4	19	80	19	53	40	0	2	57	1.11
57646647--57646710	27	2.4	27	84	7	78	26	14	1	57	1.46
57658974--57659006	3	11.0	3	100	0	66	33	0	0	66	0.92
57660873--57660930	21	2.8	22	85	14	72	29	5	0	65	1.14
57661784--57661814	16	1.9	16	93	0	53	35	6	9	48	1.62
57662505--57662560	24	2.3	24	75	6	60	41	0	0	58	0.98
57664738--57664776	8	4.6	8	84	9	51	12	0	2	84	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57665542--57665577	3	12.0	3	87	0	54	30	0	5	63	1.17
57666355--57666742	109	3.6	108	87	3	541	30	13	16	38	1.88
57667040--57667081	6	6.8	6	83	5	57	14	11	4	69	1.34
57667041--57667083	19	2.3	19	95	0	77	13	11	4	69	1.33
57669175--57669217	17	2.5	17	85	11	52	23	4	2	69	1.18
57669530--57669671	74	1.9	74	92	0	239	28	19	19	33	1.96
57669815--57670011	108	1.8	109	87	1	297	29	17	19	33	1.94
57671841--57672017	58	3.0	59	74	6	180	32	22	5	40	1.77
57671841--57672017	30	6.0	30	81	0	171	32	22	5	40	1.77
57672363--57672419	3	19.0	3	82	13	57	70	0	29	0	0.88
57672376--57672428	4	14.5	4	75	18	53	73	0	26	0	0.83
57672364--57672427	16	3.9	17	76	19	64	71	0	28	0	0.86
57672373--57672427	25	2.2	25	87	6	76	72	0	27	0	0.85
57673059--57673091	17	2.0	17	94	5	59	24	18	9	48	1.76
57673035--57673093	18	3.2	18	75	20	59	30	15	8	45	1.75
57673219--57673513	17	16.7	18	73	13	220	29	14	11	44	1.81
57673219--57673550	35	9.4	35	76	8	280	30	14	11	44	1.80
57673474--57673551	38	2.1	37	83	11	97	37	8	11	42	1.73
57675651--57676019	103	3.6	103	91	2	537	30	29	21	18	1.97
57676346--57676410	30	2.2	29	81	8	76	30	27	6	35	1.81
57676353--57676410	30	1.9	30	85	0	80	31	24	6	37	1.82
57682480--57682509	13	2.3	13	94	0	51	86	10	3	0	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57683342--57685733	78	30.7	77	81	10	1516	26	16	20	37	1.93
57683655--57683693	15	2.5	16	95	4	71	23	5	5	66	1.32
57683577--57683764	92	2.0	93	90	1	297	25	15	17	42	1.88
57683668--57685738	78	26.8	76	86	7	2121	26	16	20	37	1.93
57683668--57685735	154	13.4	153	84	8	2111	26	16	20	37	1.93
57684849--57685738	155	5.9	143	82	8	677	26	16	21	35	1.94
57684927--57685140	66	3.1	66	81	15	259	28	15	21	35	1.94
57685930--57686107	30	6.1	30	81	5	179	33	23	4	38	1.75
57686464--57686525	25	2.4	25	76	7	63	74	0	20	4	1.00
57687160--57687199	19	2.1	19	90	0	62	35	15	10	40	1.80
57687332--57687623	17	16.6	18	73	12	148	29	14	11	44	1.80
57687328--57687622	18	16.7	18	75	13	256	28	13	12	45	1.80
57687328--57687659	35	9.4	35	77	8	307	29	13	11	44	1.79
57687583--57687661	38	2.1	37	84	11	99	37	8	11	41	1.72
57690116--57690149	16	2.0	16	88	11	50	29	5	0	64	1.17
57691144--57691210	34	1.9	35	87	3	100	44	14	8	31	1.76
57693310--57693340	15	2.1	15	93	0	53	51	12	12	22	1.74
57693509--57693606	39	2.5	40	75	8	103	25	24	27	22	2.00
57698514--57698850	169	2.0	170	95	0	613	40	24	4	31	1.74
57700388--57700412	13	1.9	13	100	0	50	32	32	28	8	1.86
57702396--57702445	18	2.8	18	74	14	50	48	12	16	24	1.79
57704351--57704482	43	3.1	43	79	7	135	33	25	12	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57710438--57710471	14	2.4	14	90	9	52	32	0	2	64	1.08
57712612--57712736	50	2.5	50	90	5	200	34	14	24	27	1.94
57719585--57719610	5	5.2	5	100	0	52	38	19	19	23	1.93
57720256--57720315	30	2.0	31	83	9	79	41	0	38	20	1.52
57720529--57720565	9	4.1	9	92	0	65	29	10	13	45	1.77
57723279--57723345	33	2.0	33	100	0	134	23	2	20	52	1.61
57725583--57725607	7	3.6	7	100	0	50	16	0	0	84	0.63
57729867--57729921	24	2.3	24	82	14	62	29	23	0	47	1.52
57730898--57730974	5	15.8	5	71	20	56	58	3	0	37	1.17
57730900--57730973	21	3.5	22	81	9	91	58	4	0	37	1.17
57731644--57731673	15	2.0	15	100	0	60	20	0	13	66	1.24
57733320--57733454	40	3.4	39	78	11	134	37	21	20	21	1.95
57733490--57733772	41	6.9	41	85	0	368	21	22	26	29	1.99
57733491--57733772	82	3.4	82	90	0	429	21	22	25	29	1.99
57734449--57734480	14	2.2	15	94	5	57	37	0	25	37	1.56
57734645--57734693	7	7.3	7	82	13	50	18	0	44	36	1.50
57734645--57734714	33	2.1	33	86	0	95	15	2	47	34	1.61
57739766--57739795	13	2.2	14	94	5	53	26	0	6	66	1.16
57740040--57740367	43	7.7	43	78	6	326	23	17	29	29	1.97
57740113--57740367	129	2.0	129	88	1	377	23	18	29	28	1.98
57740672--57740789	2	61.5	2	71	11	68	43	1	10	44	1.48
57740666--57740774	12	8.8	12	77	13	114	44	1	9	44	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57740666--57740789	24	5.0	23	82	9	122	43	1	10	44	1.48
57740980--57741013	18	1.9	17	88	5	50	35	0	14	50	1.44
57741270--57741390	41	3.0	41	92	0	188	26	18	24	30	1.98
57741277--57741413	41	3.4	40	88	2	132	25	18	24	31	1.97
57750977--57751015	20	2.0	20	85	10	53	61	0	0	38	0.96
57754414--57754461	20	2.3	21	89	3	71	54	0	0	45	0.99
57754661--57755160	256	1.9	256	87	2	736	25	24	20	29	1.99
57766677--57766877	30	6.7	31	83	6	229	31	23	4	39	1.76
57766677--57766877	89	2.2	90	82	6	246	31	23	4	39	1.76
57769833--57769878	18	2.5	19	82	13	60	76	8	6	8	1.17
57770439--57771138	78	9.1	78	88	5	1023	25	18	21	35	1.95
57770487--57771065	303	1.9	304	93	2	1004	26	17	21	34	1.96
57771340--57771489	30	5.0	31	80	4	166	31	24	4	40	1.75
57771354--57771489	59	2.3	59	84	3	164	33	23	3	39	1.72
57771845--57771913	13	5.5	13	79	10	65	75	0	24	0	0.81
57771856--57771911	19	3.2	17	82	12	60	76	0	23	0	0.78
57771844--57771912	7	10.0	7	79	16	56	73	0	26	0	0.83
57771845--57771904	30	2.0	29	90	9	95	75	0	25	0	0.81
57771850--57771914	20	3.1	20	85	14	87	76	0	23	0	0.78
57771845--57771915	30	2.7	24	74	25	72	76	0	23	0	0.79
57772208--57772295	22	4.0	22	87	8	126	81	0	15	2	0.78
57772208--57772296	21	4.1	20	82	13	97	80	0	16	2	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57772208--57772292	24	3.6	25	87	12	119	81	0	16	2	0.80
57772643--57772686	20	2.2	20	88	8	63	38	13	6	40	1.71
57772879--57772965	42	2.1	41	82	4	104	43	11	5	39	1.65
57772938--57773367	17	23.7	18	70	14	244	31	11	11	45	1.76
57773091--57773150	19	3.3	18	77	15	61	40	15	8	36	1.77
57772939--57773370	18	23.9	17	68	18	157	31	11	11	44	1.77
57773036--57773273	109	2.2	110	81	6	268	32	12	10	44	1.76
57773350--57773418	32	2.3	31	90	7	106	23	8	11	56	1.62
57775159--57775207	20	2.5	20	77	12	55	55	0	0	44	0.99
57781394--57781434	15	2.8	15	88	3	66	34	48	4	12	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204