genome.fa.s26.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  172  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51211091--51211185	41	2.3	41	80	7	113	23	13	26	36	1.92
51211999--51212096	29	3.3	29	81	8	74	22	2	42	32	1.65
51212024--51212118	15	6.4	15	79	7	97	22	1	43	33	1.60
51211996--51212119	7	17.0	7	67	17	56	21	1	41	34	1.63
51212525--51212560	2	18.5	2	88	5	56	50	0	2	47	1.15
51215931--51215963	10	3.1	11	86	8	50	33	9	21	36	1.85
51215996--51216087	13	6.9	13	74	18	91	45	9	1	43	1.44
51215979--51216231	40	6.5	38	80	11	230	45	10	1	42	1.46
51215993--51216096	13	7.8	13	73	16	79	44	11	1	42	1.51
51216128--51216217	17	4.9	17	75	12	72	46	11	0	42	1.39
51216110--51216195	30	2.8	32	78	15	92	44	12	0	43	1.42
51216211--51216246	17	2.1	18	89	5	56	50	0	0	50	1.00
51216278--51216338	32	1.9	32	83	12	81	44	0	4	50	1.23
51216241--51216560	121	2.6	121	93	1	534	40	7	6	45	1.58
51216607--51216805	9	23.2	9	70	16	129	47	20	2	30	1.62
51216613--51216793	25	7.8	23	73	16	126	47	20	1	30	1.60
51216633--51216806	59	3.0	57	83	6	224	47	20	1	30	1.61
51218949--51219117	65	2.6	66	80	6	175	41	17	26	15	1.88
51219108--51219200	21	4.4	21	83	0	123	32	12	44	10	1.77
51219108--51219200	42	2.2	42	90	0	141	32	12	44	10	1.77
51219507--51219627	43	2.8	43	79	9	122	20	15	33	30	1.94
51219836--51219879	22	2.0	22	95	0	79	43	27	20	9	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51221829--51221870	21	2.0	21	81	9	50	0	33	2	64	1.07
51245701--51245755	27	2.0	29	82	7	69	54	7	5	32	1.51
51250718--51250771	22	2.5	23	77	19	62	64	1	7	25	1.30
51255393--51255520	53	2.4	53	84	3	150	39	13	25	21	1.89
51255393--51255530	27	5.1	27	70	5	91	40	13	25	21	1.89
51255527--51255604	27	2.9	27	74	0	84	39	12	24	23	1.89
51255627--51255693	27	2.5	27	87	0	89	38	10	28	22	1.87
51292698--51292737	6	6.7	6	91	0	62	32	20	10	37	1.85
51297610--51297655	22	2.1	22	84	4	58	21	21	26	30	1.99
51301386--51301421	9	4.0	9	92	0	63	30	22	0	47	1.52
51305449--51305526	38	2.1	38	97	0	147	32	8	10	48	1.68
51305464--51305545	38	2.2	38	84	0	101	34	8	13	43	1.74
51311909--51311946	20	1.9	20	88	0	58	65	0	5	28	1.14
51325426--51325458	15	2.2	15	89	10	50	30	0	9	60	1.27
51336820--51337067	100	2.4	100	83	6	282	22	28	20	28	1.99
51336770--51337067	50	5.9	50	78	6	253	23	27	20	28	1.99
51343592--51343652	29	2.1	29	81	0	68	54	1	11	32	1.46
51343670--51343697	12	2.3	12	100	0	56	85	0	0	14	0.59
51343741--51343831	25	3.5	25	74	7	83	52	5	7	34	1.53
51343869--51343899	15	2.1	15	93	0	53	70	0	0	29	0.87
51343869--51343907	18	2.2	18	85	0	51	74	0	0	25	0.82
51347447--51347498	25	2.0	26	92	3	88	36	19	17	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51354029--51354054	5	5.2	5	100	0	52	42	0	19	38	1.51
51354791--51354868	27	2.9	26	87	11	104	28	26	29	15	1.96
51359374--51359432	3	19.7	3	100	0	118	66	0	0	33	0.92
51359721--51359798	27	2.9	27	88	3	104	15	29	26	28	1.96
51359846--51359916	28	2.5	29	93	4	119	49	1	9	39	1.45
51362689--51362822	43	3.1	43	84	1	142	27	31	17	23	1.97
51362723--51362876	44	3.6	43	77	8	120	31	27	15	24	1.96
51365966--51366040	23	3.2	23	67	10	71	48	21	8	22	1.76
51365955--51366052	47	2.1	47	100	0	196	50	25	6	18	1.70
51367942--51367966	6	4.2	6	100	0	50	48	0	0	52	1.00
51368609--51368633	13	1.9	13	100	0	50	20	16	8	56	1.65
51369132--51369199	29	2.3	29	85	9	86	35	22	16	26	1.94
51370526--51370559	18	1.9	18	94	5	61	44	8	29	17	1.79
51370990--51371027	14	2.7	14	100	0	76	31	36	5	26	1.79
51371588--51372134	114	4.8	114	90	4	856	25	26	21	26	1.99
51371588--51372176	225	2.6	226	90	3	891	24	26	21	27	1.99
51372809--51372843	16	2.2	16	89	0	52	48	5	0	45	1.26
51376549--51376583	13	2.8	12	83	8	52	40	0	0	60	0.97
51376544--51376586	19	2.3	19	84	4	61	44	0	0	55	0.99
51376732--51376803	26	2.6	28	77	16	80	54	0	2	43	1.15
51376731--51376795	18	3.7	17	74	24	55	53	0	3	43	1.16
51376732--51376798	8	7.6	9	76	21	54	53	0	2	43	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51376752--51376901	21	7.8	19	70	18	71	57	2	2	38	1.24
51376824--51376901	21	3.9	20	82	9	72	60	2	1	35	1.19
51377070--51377105	18	2.1	17	89	5	54	44	11	16	27	1.82
51377367--51377406	9	4.4	9	81	12	55	32	2	0	65	1.06
51384510--51384571	31	2.0	31	96	0	115	33	22	9	33	1.87
51388446--51388642	108	1.8	108	87	2	297	29	20	12	37	1.89
51390840--51390937	25	3.9	25	78	12	94	22	22	22	32	1.98
51390840--51390937	50	2.0	50	82	11	121	22	22	22	32	1.98
51391203--51391276	24	3.1	24	100	0	148	28	12	25	33	1.92
51393827--51393880	26	2.1	26	89	3	83	46	0	3	50	1.19
51395289--51395333	23	1.9	24	82	13	58	68	2	0	28	1.01
51395357--51395388	14	2.3	14	94	0	55	84	0	0	15	0.63
51402420--51402774	125	2.8	126	90	2	570	30	15	21	32	1.94
51405885--51406046	55	2.9	55	92	2	272	43	4	13	38	1.64
51406042--51406277	29	8.2	29	94	0	411	26	0	27	46	1.53
51406060--51406118	28	2.3	23	73	24	64	25	0	23	50	1.49
51406299--51406480	25	7.6	25	64	20	75	46	13	1	38	1.54
51406279--51406482	71	2.9	71	96	0	381	46	14	1	37	1.56
51406770--51407011	131	1.8	132	90	0	387	24	28	25	21	1.99
51407697--51407721	7	3.6	7	100	0	50	60	12	0	28	1.32
51408802--51408864	30	2.1	30	96	0	117	66	0	0	33	0.92
51408866--51408978	51	2.2	51	90	3	174	39	1	29	29	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51408953--51409022	22	3.2	22	95	0	131	42	0	31	25	1.55
51419651--51419688	14	2.7	14	95	0	67	34	21	7	36	1.82
51424160--51424186	6	4.5	6	100	0	54	66	0	0	33	0.92
51431101--51431143	21	2.1	21	86	4	61	37	2	9	51	1.47
51431185--51431224	18	2.3	17	86	4	53	30	2	2	65	1.19
51432926--51432993	30	2.3	30	87	2	93	29	7	2	60	1.39
51432951--51432994	14	3.0	14	80	6	52	34	2	2	61	1.21
51434442--51434596	57	2.7	57	97	0	292	25	23	34	15	1.94
51448052--51448123	4	17.8	4	75	15	51	19	6	1	72	1.15
51450617--51450762	30	4.9	29	80	11	145	33	23	4	39	1.74
51450617--51450753	58	2.3	59	83	3	168	32	22	4	40	1.74
51450718--51450783	30	2.2	30	86	0	87	34	30	4	30	1.78
51451106--51451157	3	17.0	3	84	11	70	65	1	32	0	1.04
51451156--51451183	10	2.8	10	100	0	56	85	14	0	0	0.59
51451361--51451420	24	2.5	25	75	17	65	33	45	21	0	1.52
51451446--51451525	11	7.3	10	72	17	61	80	0	16	3	0.86
51451446--51451527	34	2.4	35	85	6	105	78	0	18	3	0.90
51451442--51451504	26	2.5	26	85	12	80	76	0	22	1	0.88
51451451--51451515	26	2.5	25	80	14	78	80	0	16	3	0.85
51451852--51451917	19	3.5	18	78	15	62	31	15	9	43	1.77
51451852--51451917	20	3.5	19	79	16	66	31	15	9	43	1.77
51452103--51452170	35	2.0	34	88	2	100	35	10	4	50	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51452138--51452660	18	28.6	18	68	15	227	33	11	10	43	1.76
51452225--51452331	40	2.7	40	78	10	139	40	11	9	39	1.73
51452347--51452660	35	8.7	36	69	14	137	33	11	11	43	1.77
51452532--51452661	53	2.5	53	79	6	156	33	10	11	43	1.76
51462276--51462625	74	4.6	74	92	2	547	28	16	21	34	1.95
51462800--51462874	31	2.4	32	78	17	93	29	16	5	49	1.67
51462815--51462987	30	5.8	30	74	12	149	33	20	4	41	1.73
51462822--51462980	59	2.7	59	78	7	169	35	20	4	38	1.73
51463382--51463429	19	2.7	18	87	6	62	18	52	25	4	1.63
51463614--51463677	22	3.0	22	84	8	78	78	0	21	0	0.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204