genome.fa.s26.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  57  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16773321--16773488	41	4.0	41	91	1	255	23	21	24	30	1.99
16773475--16773501	13	2.1	13	100	0	54	14	40	22	22	1.90
16773912--16773943	14	2.2	15	94	5	57	31	0	31	37	1.58
16773963--16774016	14	3.9	14	80	0	54	25	0	40	33	1.56
16774101--16774134	7	4.9	7	100	0	68	14	0	55	29	1.40
16774101--16774143	21	2.0	21	90	0	68	13	0	53	32	1.41
16774043--16774234	103	1.9	103	86	2	278	23	1	31	43	1.61
16774622--16774655	16	2.1	16	88	5	50	70	2	2	23	1.15
16774892--16775051	75	2.1	77	86	5	218	45	15	8	30	1.76
16778155--16778269	53	2.2	53	98	0	221	24	20	13	41	1.88
16779228--16779506	43	6.5	42	91	3	423	20	16	33	29	1.95
16780340--16780404	29	2.2	31	83	5	80	61	0	1	36	1.05
16782033--16782303	43	6.3	43	77	8	255	32	24	16	26	1.96
16782033--16782284	86	2.9	87	83	2	303	32	24	17	26	1.97
16782033--16782303	129	2.1	129	82	4	314	32	24	16	26	1.96
16790481--16790568	42	2.1	41	81	6	97	31	22	15	29	1.95
16790732--16790780	19	2.5	19	90	3	71	14	2	8	75	1.12
16791120--16791165	14	3.2	15	84	9	60	32	45	0	21	1.52
16791188--16791246	21	2.8	20	80	10	64	37	37	0	25	1.56
16791209--16791292	28	3.0	28	81	6	80	44	32	0	23	1.54
16791243--16791358	7	16.4	7	68	12	58	48	25	1	25	1.61
16791243--16791296	14	3.8	14	79	13	65	51	24	0	24	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16791777--16792248	40	11.9	40	76	7	392	27	21	20	30	1.98
16791665--16792248	275	2.1	273	86	2	796	28	21	20	30	1.98
16796056--16796176	59	2.1	59	100	0	242	29	24	18	27	1.98
16805273--16805397	60	2.1	60	87	0	178	38	14	31	16	1.88
16805341--16805410	20	3.5	19	67	9	59	37	21	32	8	1.84
16806947--16807025	37	2.1	37	86	4	106	25	29	18	26	1.98
16807144--16807741	47	12.7	47	95	0	1016	29	28	8	33	1.87
16807144--16807894	141	5.5	141	89	5	1146	29	28	8	33	1.87
16807713--16807768	27	2.1	27	96	0	103	39	30	0	30	1.57
16807620--16807862	121	2.0	121	97	0	459	32	28	6	32	1.83
16807666--16807815	74	2.0	74	97	0	282	33	29	5	32	1.80
16807572--16807894	168	1.9	168	97	0	610	31	28	7	32	1.85
16807740--16807894	47	3.3	47	96	0	283	31	29	7	31	1.85
16811273--16811455	40	4.6	40	80	6	194	24	26	22	26	2.00
16811763--16811841	29	2.7	29	86	5	106	27	32	15	24	1.95
16813744--16813822	37	2.1	37	88	4	115	25	30	18	25	1.98
16813941--16814593	47	13.7	47	93	3	1065	29	28	8	33	1.87
16813941--16814746	141	5.8	141	88	8	1197	29	28	8	33	1.86
16814565--16814620	27	2.1	27	100	0	112	37	30	0	32	1.58
16814518--16814667	74	2.0	74	98	0	291	32	29	5	32	1.80
16814472--16814714	121	2.0	121	98	0	468	31	28	6	32	1.83
16814592--16814746	47	3.3	47	97	0	292	30	29	7	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16814424--16814746	168	1.9	168	98	0	628	30	28	7	33	1.85
16818665--16818897	5	46.6	5	88	1	315	37	20	4	37	1.74
16821448--16821488	18	2.3	18	95	0	73	26	0	26	46	1.53
16822300--16822344	20	2.2	20	92	0	72	28	31	11	28	1.91
16832451--16832535	43	2.0	43	92	0	143	50	2	21	25	1.60
16835974--16836003	15	2.0	15	93	0	51	70	0	23	6	1.11
16841829--16842007	30	5.9	30	80	2	198	25	26	14	33	1.94
16841832--16842003	91	1.9	91	90	0	272	24	27	14	33	1.94
16843735--16843942	40	5.2	41	80	4	246	23	21	28	26	1.99
16843739--16843942	80	2.5	80	90	0	309	23	21	29	25	1.99
16845300--16845405	30	3.5	30	82	0	140	28	29	9	33	1.88
16849154--16849505	43	8.2	43	76	9	247	27	28	18	25	1.98
16849323--16849505	85	2.2	84	80	7	201	28	31	15	24	1.96
16849863--16849933	21	3.4	21	82	0	79	5	42	16	35	1.72
16849904--16850050	66	2.2	66	86	4	199	12	30	17	38	1.88
16849925--16850069	66	2.2	66	86	4	204	14	28	18	38	1.90
16855534--16855598	9	7.8	9	70	16	50	38	1	16	43	1.58
16855672--16856608	31	31.3	31	80	11	858	39	2	10	47	1.51
16855830--16855874	22	2.0	22	95	0	81	42	0	11	46	1.39
16855751--16856457	56	12.0	56	86	7	722	39	2	10	47	1.52
16855886--16855930	22	2.0	22	95	0	81	42	0	11	46	1.39
16855703--16856575	175	4.9	176	84	9	941	39	2	10	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16856005--16856049	22	2.0	22	95	0	81	42	0	11	46	1.39
16856061--16856105	22	2.0	22	95	0	81	42	0	11	46	1.39
16856218--16856308	22	4.3	22	63	20	59	37	3	9	49	1.53
16856304--16856349	22	2.1	22	95	0	83	41	0	10	47	1.38
16856311--16856364	22	2.3	22	87	9	72	40	1	11	46	1.50
16856453--16856498	22	2.1	22	95	0	83	41	0	10	47	1.38
16856460--16856513	22	2.3	22	87	9	72	40	1	11	46	1.50
16855908--16856608	149	4.7	149	85	8	938	39	2	10	47	1.52
16856519--16856606	22	4.2	21	66	24	51	37	1	12	48	1.48
16856382--16856436	18	3.3	18	66	23	57	32	1	12	52	1.50
16855675--16856608	118	7.9	116	81	12	667	39	2	10	47	1.51
16859456--16859524	35	2.0	36	86	11	99	37	0	7	55	1.28
16861076--16861113	15	2.5	15	86	0	58	36	42	0	21	1.53
16861111--16861142	16	1.9	17	93	6	57	40	21	0	37	1.54
16861635--16861951	41	7.8	40	83	5	221	35	25	23	15	1.94
16861634--16861951	82	3.9	80	80	5	309	35	25	23	15	1.94
16861695--16861951	120	2.1	122	86	3	349	36	26	23	14	1.93
16868518--16868549	17	1.9	16	93	6	55	6	37	3	53	1.42
16868854--16869037	9	19.2	9	67	16	77	60	1	4	32	1.27
16868872--16868969	30	3.4	27	78	17	99	61	1	2	35	1.15
16868853--16868899	19	2.4	20	85	7	69	59	0	4	36	1.17
16868904--16869037	19	6.9	19	71	9	56	62	1	5	30	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16868925--16869026	38	2.7	37	76	11	91	62	1	6	28	1.31
16869203--16869331	19	6.9	19	70	15	83	27	1	1	68	1.07
16869216--16869332	10	12.4	9	73	12	76	28	0	0	70	0.99
16869226--16869332	37	2.9	37	78	12	112	28	0	0	69	1.01
16869437--16869670	90	2.6	90	84	8	273	37	9	17	35	1.83
16872976--16873035	17	3.4	17	76	17	52	56	3	1	38	1.26
16874838--16874897	25	2.4	24	81	13	68	46	18	8	26	1.77
16882274--16882417	27	5.3	27	87	5	186	40	16	22	20	1.91
16882653--16882755	26	4.0	26	78	2	100	15	19	25	39	1.91
16882648--16882747	52	1.9	53	85	6	141	19	19	23	39	1.93
16882866--16882978	30	3.8	30	79	2	120	26	26	17	29	1.98
16891838--16891864	13	2.1	13	100	0	54	33	0	22	44	1.53
16894642--16894675	3	11.0	3	87	6	50	67	0	2	29	1.05
16895152--16895205	19	2.8	19	94	0	99	37	16	9	37	1.81
16902654--16902720	33	2.0	33	100	0	134	38	11	14	34	1.84
16902846--16902988	53	2.5	55	82	8	164	37	8	11	42	1.72
16908698--16908745	16	3.0	16	96	0	87	39	12	18	29	1.88
16918959--16919053	45	2.1	45	88	7	140	29	22	20	28	1.98
16929970--16930012	22	1.9	23	85	4	61	74	0	20	4	1.00
16931211--16931870	88	7.5	88	86	0	827	28	26	23	21	1.99
16931268--16931402	44	3.1	44	69	4	128	27	23	23	25	2.00
16931283--16931769	44	11.0	45	62	7	174	28	26	23	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16932185--16932470	44	6.6	44	72	14	191	28	19	23	28	1.98
16932170--16932567	217	1.8	217	90	1	645	29	19	23	28	1.98
16936464--16936557	45	2.1	45	89	0	143	30	24	18	26	1.97
16936563--16936749	51	3.7	51	77	6	209	29	27	17	25	1.97
16936561--16936745	101	1.8	102	89	3	293	30	27	17	24	1.97
16941706--16941758	21	2.5	20	79	11	61	43	15	0	41	1.46
16942030--16942747	238	3.0	238	91	2	1165	36	15	13	34	1.87
16947259--16947443	79	2.3	81	84	7	236	24	22	27	25	2.00
16947260--16947443	40	4.6	40	83	9	216	24	22	27	25	2.00
16947312--16947476	79	2.1	79	84	6	210	26	21	27	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204