genome.fa.s26.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  68  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20107995--20108028	18	1.9	17	88	5	50	64	17	0	17	1.29
20108732--20108764	3	11.0	3	93	0	57	63	0	3	33	1.10
20110533--20111132	44	13.7	44	68	8	195	30	25	17	26	1.97
20110500--20110867	174	2.1	174	94	0	646	30	26	17	25	1.98
20110714--20110989	133	2.1	133	95	0	489	29	25	17	27	1.97
20110540--20111175	307	2.1	307	93	0	1087	30	25	17	26	1.97
20110847--20111529	174	3.9	174	74	12	644	28	25	19	26	1.98
20111101--20111623	44	11.9	44	74	10	299	25	27	20	26	1.99
20110544--20111264	307	2.3	307	88	1	1018	29	26	18	26	1.98
20111100--20111620	133	3.9	133	74	8	375	26	27	20	26	1.99
20111101--20111623	89	5.9	89	75	8	433	25	27	20	26	1.99
20110991--20111623	350	1.8	352	89	2	1004	27	26	19	26	1.99
20112834--20112884	8	6.4	8	79	20	54	13	13	0	72	1.12
20112825--20112869	13	3.2	15	84	12	60	15	15	0	68	1.21
20112825--20112869	7	6.4	7	82	14	58	15	15	0	68	1.21
20113770--20113845	33	2.3	34	82	8	95	5	6	7	80	1.03
20117147--20117188	23	1.9	23	85	9	61	52	7	19	21	1.69
20117963--20117996	18	1.9	17	88	5	50	64	17	0	17	1.29
20121829--20121884	19	2.9	19	83	0	67	8	19	23	48	1.77
20122637--20122661	11	2.3	11	100	0	50	12	20	0	68	1.21
20125578--20125632	24	2.2	24	84	9	67	34	1	1	61	1.17
20126506--20126568	21	3.1	20	77	9	65	50	1	1	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20126501--20126578	41	1.9	40	82	7	95	52	1	1	44	1.17
20127964--20127994	12	2.7	11	90	9	53	0	19	3	77	0.90
20128966--20128992	14	1.9	14	100	0	54	29	18	7	44	1.77
20137080--20137238	50	3.2	50	91	2	248	28	25	25	20	1.99
20143920--20144035	56	2.2	53	83	9	139	28	19	27	24	1.99
20147550--20147677	61	2.1	61	91	0	202	25	29	21	23	1.99
20157919--20157998	25	3.2	25	72	22	69	26	21	28	23	1.99
20157928--20158000	25	2.9	25	82	13	96	26	21	28	23	1.99
20159483--20159658	40	4.4	40	85	2	194	33	15	20	30	1.93
20167433--20167482	18	2.9	16	76	23	57	24	2	2	72	1.06
20167431--20167479	13	4.2	12	75	14	50	24	2	2	71	1.07
20167444--20167494	25	2.0	25	88	7	77	25	5	0	68	1.12
20169409--20169443	15	2.4	15	90	4	54	48	0	8	42	1.33
20170236--20170265	15	1.9	16	93	6	53	13	3	6	76	1.11
20181439--20181479	22	1.9	22	90	5	66	17	17	2	63	1.42
20181691--20181715	13	1.9	13	100	0	50	32	4	24	40	1.73
20183374--20183453	41	2.0	41	87	0	115	26	18	23	31	1.98
20187427--20187458	13	2.5	13	95	5	57	56	0	40	3	1.15
20187934--20187981	21	2.2	22	85	3	62	41	6	0	52	1.27
20194055--20194247	106	1.8	106	89	2	307	38	18	19	23	1.93
20199125--20199304	39	4.7	38	81	12	156	26	27	22	23	1.99
20208830--20208958	45	2.9	45	82	2	152	46	14	17	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20224620--20224706	45	1.9	45	92	0	147	25	16	24	34	1.95
20231418--20231454	17	2.1	18	85	14	51	16	40	0	43	1.48
20237025--20237067	19	2.3	19	80	15	54	11	23	41	23	1.87
20237397--20237805	134	3.1	135	76	8	354	41	18	14	25	1.88
20237304--20237804	188	2.7	185	80	7	492	41	18	14	24	1.89
20237278--20237804	27	19.7	27	80	5	414	41	19	14	24	1.89
20240762--20241052	27	10.7	28	80	9	246	40	18	14	25	1.89
20240762--20241052	54	5.4	54	78	10	299	40	18	14	25	1.89
20240762--20241051	81	3.6	80	80	12	292	41	18	14	25	1.89
20254777--20255025	50	4.9	50	76	9	184	22	26	21	29	1.99
20268356--20268417	29	2.1	29	85	11	83	30	14	4	50	1.64
20271751--20271786	13	2.8	13	91	0	54	30	33	8	27	1.86
20278388--20278420	16	2.1	16	100	0	66	27	18	12	42	1.85
20287976--20288029	25	2.2	25	83	12	67	55	0	3	40	1.17
20288694--20288754	29	2.1	30	84	9	81	49	9	8	32	1.66
20299964--20300025	30	2.1	30	87	0	88	48	9	8	33	1.65
20308866--20308906	17	2.4	16	84	11	55	21	0	0	78	0.76
20314749--20314773	10	2.5	10	100	0	50	68	8	8	16	1.38
20315778--20315853	3	25.7	3	76	12	59	28	3	3	63	1.30
20316821--20316897	37	2.1	37	85	0	100	20	24	20	33	1.97
20330736--20330996	43	6.1	43	74	5	206	27	24	18	29	1.98
20341393--20341438	21	2.2	21	100	0	92	26	0	30	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20347432--20347458	7	3.9	7	100	0	54	55	0	0	44	0.99
20347601--20347684	31	2.7	31	85	3	116	34	14	30	20	1.92
20352216--20352265	21	2.4	21	86	0	64	56	2	2	40	1.22
20355969--20356112	25	5.7	25	85	6	166	30	22	21	25	1.99
20355969--20356112	52	2.8	50	84	8	175	30	22	21	25	1.99
20362746--20362826	25	3.2	25	72	10	67	25	19	23	30	1.98
20372996--20373130	72	1.9	72	87	0	198	36	22	14	26	1.93
20375380--20375424	22	2.0	22	100	0	90	42	13	17	26	1.86
20376438--20376496	23	2.5	24	81	13	70	37	18	11	32	1.87
20387726--20387758	17	1.9	17	88	11	50	48	12	0	39	1.40
20396839--20396881	21	2.0	21	82	8	52	46	2	18	32	1.62
20405225--20405336	49	2.4	47	81	14	133	52	2	0	43	1.21
20405310--20405384	12	6.2	13	69	18	54	53	1	1	44	1.17
20405350--20405399	24	2.1	23	82	10	57	60	2	2	36	1.20
20407525--20407555	3	10.3	3	92	0	53	0	0	32	67	0.91
20408374--20408417	21	2.0	22	86	4	63	18	4	13	63	1.46
20411844--20411909	32	2.1	32	88	0	96	51	3	18	27	1.60
20412488--20412699	101	2.1	101	90	0	325	22	22	20	35	1.96
20419760--20419858	23	4.3	23	93	0	162	21	20	26	32	1.97
20420062--20420109	23	2.0	25	84	8	64	39	0	22	37	1.55
20423778--20423802	9	2.8	9	100	0	50	72	0	20	8	1.10
20423909--20423950	18	2.3	18	87	0	57	73	2	16	7	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20426387--20426456	31	2.2	32	82	9	83	25	28	12	32	1.93
20436374--20436424	20	2.5	20	83	0	66	29	13	33	23	1.93
20436710--20436750	14	2.7	15	85	7	57	21	2	2	73	1.07
20440545--20440596	23	2.3	22	75	21	54	9	23	1	65	1.32
20449583--20449636	20	2.7	20	82	0	72	27	12	35	24	1.92
20454145--20454186	22	2.0	21	90	4	66	54	11	0	33	1.37
20454180--20454226	19	2.5	20	75	10	53	44	17	6	31	1.73
20456053--20456110	15	4.1	15	75	20	61	6	18	0	74	1.04
20456063--20456113	12	4.1	12	76	23	52	3	17	0	78	0.90
20456053--20456120	27	2.5	27	79	9	68	7	20	0	72	1.09
20456094--20456127	12	2.8	12	90	4	50	11	20	0	67	1.21
20457281--20457329	21	2.4	20	90	6	80	18	0	4	77	0.92
20457271--20457327	11	5.8	10	80	12	57	19	0	3	77	0.92
20457563--20457627	31	2.1	31	94	0	112	49	20	7	23	1.74
20469299--20469352	19	2.8	20	77	2	56	25	25	12	35	1.92
20471518--20471574	23	2.5	23	85	5	71	59	10	3	26	1.46
20480255--20480301	24	2.0	24	100	0	94	19	8	25	46	1.77
20484074--20484119	15	3.2	15	75	12	60	30	8	10	50	1.68
20486703--20486890	35	5.4	34	70	8	128	27	24	25	23	2.00
20486697--20486931	70	3.3	70	89	4	341	26	23	24	25	2.00
20487917--20487980	27	2.4	27	82	10	69	48	9	1	40	1.45
20490153--20490197	24	1.9	24	90	4	74	13	4	11	71	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20490155--20490208	24	2.3	23	81	6	63	12	9	7	70	1.33
20497276--20497473	98	2.0	98	91	1	317	49	17	14	18	1.80
20500004--20500045	20	2.1	20	90	0	66	42	21	14	21	1.88
20502822--20502846	13	1.9	13	100	0	50	32	0	0	68	0.90
20503495--20503920	126	3.4	126	92	1	671	30	18	23	28	1.97
20504522--20504927	22	18.5	22	84	7	486	21	0	31	46	1.54
20504522--20504927	65	6.2	65	89	5	577	21	0	31	46	1.54
20505471--20505513	18	2.4	18	84	0	59	46	9	27	16	1.77
20506305--20506342	20	1.9	20	84	10	51	55	7	2	34	1.43
20507280--20507379	51	2.0	51	86	4	139	46	2	25	27	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204