genome.fa.s26.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  104  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32186333--32186376	18	2.4	18	81	7	54	22	29	15	31	1.95
32186523--32186750	68	3.4	68	87	3	307	23	12	21	42	1.86
32187410--32187553	54	2.7	54	82	2	155	20	25	27	27	1.99
32188431--32188536	37	2.9	37	86	0	140	40	28	11	19	1.86
32189160--32189215	23	2.5	23	74	11	62	60	19	0	19	1.36
32198408--32198470	21	3.3	21	66	25	57	22	17	14	46	1.84
32198403--32198477	36	2.1	36	94	0	132	25	16	12	46	1.81
32199285--32199328	6	7.2	6	89	5	70	50	13	15	20	1.78
32199308--32199407	45	2.2	45	80	0	110	39	16	20	25	1.92
32199612--32199719	40	2.7	40	84	5	121	40	20	6	32	1.78
32200767--32200810	16	2.6	16	79	10	52	47	4	0	47	1.22
32206959--32206995	13	2.8	13	100	0	74	45	13	0	40	1.43
32215809--32215852	17	2.4	19	88	11	65	47	0	9	43	1.35
32221674--32221878	27	7.6	27	88	3	259	30	28	14	26	1.95
32229525--32229726	27	7.6	27	86	4	248	30	28	14	26	1.95
32237615--32237837	119	1.9	120	84	6	301	25	27	22	24	2.00
32237613--32237837	40	5.7	40	85	6	287	25	28	22	24	2.00
32241380--32241497	50	2.3	50	85	5	148	33	16	13	36	1.88
32243800--32243843	18	2.4	18	84	0	52	70	2	20	6	1.21
32243888--32243929	18	2.4	18	76	4	50	69	4	16	9	1.33
32246182--32246224	22	2.0	21	90	4	68	65	2	6	25	1.30
32247214--32247253	20	2.0	20	90	0	62	12	27	17	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32251532--32251656	62	2.0	62	88	0	187	24	30	20	24	1.99
32254091--32254172	25	3.3	25	87	0	128	39	37	8	14	1.77
32269552--32269638	29	3.0	29	81	1	93	42	21	13	21	1.88
32275994--32276021	8	3.5	8	100	0	56	25	0	0	75	0.81
32276089--32276137	16	3.0	16	93	3	80	24	14	10	51	1.73
32278560--32278756	51	3.9	49	80	4	207	23	17	29	29	1.97
32278565--32278749	101	1.8	101	90	5	302	23	17	28	30	1.97
32283137--32283206	27	2.6	27	83	2	77	30	25	14	30	1.95
32286116--32286180	27	2.4	27	76	0	67	26	23	10	40	1.87
32286273--32286362	27	3.3	27	77	1	99	33	22	12	32	1.91
32288595--32288759	66	2.5	66	77	2	188	32	16	23	28	1.96
32294227--32294267	15	2.8	15	75	17	50	31	2	0	65	1.05
32297571--32297609	18	2.2	18	95	0	69	51	7	33	7	1.59
32299552--32299589	19	2.0	19	100	0	76	42	5	21	31	1.75
32307415--32307455	18	2.2	19	91	4	66	39	0	0	60	0.96
32307412--32307470	19	3.0	20	80	14	68	40	3	1	54	1.27
32308949--32309079	57	2.3	58	84	9	178	51	6	15	27	1.67
32309050--32309102	7	7.6	7	100	0	106	73	0	13	13	1.10
32314495--32315341	44	19.1	44	88	2	1203	28	24	19	27	1.99
32317562--32317597	6	5.7	6	93	6	54	0	13	0	86	0.58
32317562--32317597	7	5.4	7	96	3	58	0	13	0	86	0.58
32317562--32317597	13	2.8	12	88	12	54	0	13	0	86	0.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32317609--32317657	20	2.6	18	79	20	55	10	6	12	71	1.30
32322697--32322774	29	2.7	28	84	11	104	25	15	30	28	1.96
32322727--32323053	173	1.9	174	93	0	566	29	14	24	31	1.94
32330241--32330318	29	2.7	28	84	11	104	25	15	30	28	1.96
32330271--32330597	173	1.9	174	93	0	566	29	14	24	31	1.94
32333030--32333080	9	5.7	9	77	9	50	58	3	7	29	1.44
32333017--32333098	27	2.8	29	76	14	80	54	7	8	29	1.57
32333041--32333092	12	4.1	12	74	13	50	57	0	9	32	1.31
32336766--32336865	39	2.6	38	80	4	121	49	8	4	39	1.51
32349622--32349679	28	2.1	28	100	0	116	36	13	29	20	1.91
32351768--32351841	27	2.7	27	91	0	121	40	24	14	20	1.90
32351804--32351878	37	2.0	37	94	0	132	40	30	12	17	1.86
32351841--32352075	27	8.8	27	81	1	258	43	20	16	18	1.88
32351841--32352075	53	4.4	53	80	7	237	43	20	16	18	1.88
32351841--32352074	80	2.9	80	83	3	274	44	20	16	18	1.87
32353392--32353732	54	6.3	53	80	5	355	22	18	19	39	1.92
32353403--32353712	27	11.5	27	81	2	320	21	19	18	40	1.92
32359861--32359921	28	2.2	28	91	2	97	27	22	24	24	2.00
32360034--32360103	26	2.7	26	95	0	131	38	22	22	15	1.92
32360285--32360622	27	12.5	27	81	3	140	22	18	17	41	1.90
32360313--32360607	54	5.4	54	80	4	299	23	17	17	41	1.90
32360312--32360616	81	3.8	81	81	3	353	23	18	17	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32373352--32373394	20	2.2	19	87	4	59	76	9	2	11	1.10
32380905--32380939	16	2.2	16	89	0	52	37	25	20	17	1.94
32381730--32381806	25	2.9	26	84	5	93	29	20	19	29	1.97
32386953--32386981	14	2.0	15	93	6	51	37	6	0	55	1.27
32400338--32400470	39	3.4	39	87	0	185	12	30	20	36	1.90
32400358--32400459	20	5.2	20	62	13	50	13	31	17	37	1.89
32406205--32406299	50	1.9	50	97	0	181	36	4	27	31	1.76
32411633--32411678	21	2.2	21	84	7	58	23	28	15	32	1.95
32418262--32418298	7	5.3	7	96	0	65	43	2	0	54	1.14
32418346--32418379	16	2.1	16	89	10	52	64	0	20	14	1.28
32419360--32419393	15	2.2	15	89	5	50	73	0	2	23	0.97
32420339--32420439	35	2.9	35	82	4	114	18	12	29	38	1.88
32434954--32434985	11	2.9	11	95	0	55	28	0	15	56	1.40
32438269--32438336	16	4.2	16	90	0	100	30	0	30	38	1.58
32438552--32438606	15	3.4	16	80	16	53	50	1	0	47	1.11
32438572--32438606	18	2.0	17	88	5	52	54	0	0	45	0.99
32438692--32438726	18	2.0	17	88	5	52	54	0	0	45	0.99
32438587--32438777	61	3.2	60	67	20	155	48	5	2	43	1.38
32438550--32438833	120	2.4	120	90	2	446	48	4	1	44	1.34
32440743--32440779	19	1.9	19	88	0	56	29	16	18	35	1.93
32441807--32441836	15	2.0	15	93	0	51	50	20	23	6	1.71
32444245--32444305	30	2.0	30	100	0	122	45	13	21	19	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32449776--32449810	17	2.0	18	88	5	54	17	31	31	20	1.95
32451593--32451634	14	3.0	14	83	13	59	23	2	0	73	0.94
32452139--32452179	13	3.2	13	86	10	57	36	7	7	48	1.59
32455006--32455661	220	3.0	220	94	0	1158	29	16	18	35	1.93
32459011--32459152	43	3.3	43	79	8	132	34	21	14	30	1.92
32460497--32460522	2	13.0	2	100	0	52	50	0	0	50	1.00
32465589--32465812	104	2.2	104	93	1	378	17	19	31	31	1.95
32465731--32465882	71	2.1	72	92	1	252	23	17	29	30	1.97
32473142--32473365	104	2.2	104	93	1	378	17	19	31	31	1.95
32473284--32473435	71	2.1	72	92	1	252	23	17	29	30	1.97
32484718--32484794	26	3.0	26	82	0	91	40	24	19	15	1.90
32484989--32485384	81	4.9	81	86	2	519	19	19	17	43	1.88
32484989--32485384	27	14.7	26	82	7	427	19	19	17	43	1.88
32488687--32488729	13	3.2	14	83	6	54	53	16	16	13	1.73
32489172--32489214	13	3.3	13	81	9	52	4	25	32	37	1.77
32491680--32491727	18	2.7	18	87	3	62	10	12	6	70	1.32
32492964--32493010	15	3.3	15	72	22	55	36	10	2	51	1.49
32492956--32493010	28	2.1	27	90	10	87	36	9	3	50	1.51
32492963--32493027	28	2.4	27	87	5	94	33	9	4	52	1.54
32501150--32501183	17	1.9	18	94	5	61	52	0	5	41	1.25
32509280--32509310	15	2.1	15	100	0	62	35	19	0	45	1.51
32511487--32511513	11	2.5	11	100	0	54	22	7	18	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32512909--32513102	92	2.1	92	88	5	286	44	4	4	46	1.41
32513080--32513178	52	2.0	52	80	11	118	45	6	2	46	1.39
32513135--32513168	17	2.0	17	94	0	59	44	5	0	50	1.26
32513140--32513187	17	3.0	16	79	17	55	45	6	2	45	1.40
32513228--32513262	18	2.0	17	88	5	52	40	0	0	60	0.97
32513175--32513408	129	1.8	130	95	0	425	42	2	5	49	1.39
32513357--32513391	18	2.0	17	88	5	52	45	0	0	54	0.99
32513345--32513616	144	1.9	147	94	3	487	47	2	3	46	1.34
32513501--32513535	18	2.0	17	88	5	52	45	0	0	54	0.99
32513697--32513791	45	2.1	45	88	1	138	32	27	5	34	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204