genome.fa.s26.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  176  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52104269--52104317	22	2.2	22	89	7	73	48	6	6	38	1.53
52104246--52104361	55	2.1	55	98	0	223	47	10	6	36	1.62
52104314--52104362	22	2.2	22	77	0	53	46	12	6	34	1.66
52104851--52104940	46	2.0	46	93	0	153	43	37	11	7	1.69
52105945--52106006	3	21.0	3	72	21	51	30	4	1	62	1.25
52106012--52106065	23	2.5	23	82	8	60	33	9	1	55	1.42
52106039--52106103	28	2.7	23	75	17	60	36	10	3	49	1.53
52106512--52106542	5	6.4	5	96	3	55	19	0	0	80	0.71
52118604--52118901	46	6.8	45	72	13	205	31	20	21	26	1.98
52118604--52118957	44	8.2	43	72	11	206	31	20	20	26	1.98
52118604--52118957	87	4.1	88	74	11	248	31	20	20	26	1.98
52119573--52119662	46	2.0	46	93	0	153	43	37	11	7	1.69
52120757--52120827	22	2.9	23	76	15	63	33	11	2	52	1.52
52121012--52121075	27	2.4	25	78	14	67	35	9	3	51	1.50
52121236--52121266	5	6.4	5	96	3	55	19	0	0	80	0.71
52122329--52122358	14	2.1	14	100	0	60	53	6	13	26	1.64
52123595--52123640	16	2.9	16	80	0	56	23	19	43	13	1.86
52124202--52124243	20	2.1	20	86	8	59	14	4	4	76	1.12
52124159--52124213	28	2.0	28	92	0	92	34	3	7	54	1.46
52125880--52125911	15	2.2	14	94	5	55	37	40	0	21	1.54
52125217--52126391	393	3.0	388	91	4	1866	42	22	4	30	1.74
52126149--52126192	23	1.9	23	81	9	54	54	9	2	34	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52126271--52126299	15	1.9	15	100	0	58	37	48	0	13	1.43
52126996--52127083	41	2.2	40	85	8	115	47	28	11	12	1.76
52127280--52127356	40	2.0	40	86	2	111	22	15	15	46	1.83
52128415--52128595	53	3.7	53	72	21	185	49	7	3	39	1.50
52128429--52128612	93	2.0	93	95	0	332	48	7	4	38	1.53
52128434--52128604	18	9.3	18	63	23	63	49	7	4	39	1.50
52128657--52128716	22	2.6	23	86	5	77	50	3	1	45	1.28
52130308--52130577	113	2.4	112	81	3	265	34	16	22	27	1.95
52130511--52130652	75	1.9	75	86	0	203	34	16	21	26	1.95
52130398--52130957	190	3.0	187	80	7	591	33	17	22	26	1.96
52130494--52130669	75	2.3	74	78	5	174	32	18	23	25	1.97
52130720--52130864	76	1.9	75	84	4	193	30	17	21	30	1.96
52131880--52131922	21	2.0	21	83	16	54	53	2	0	44	1.13
52132580--52132678	44	2.2	44	92	0	162	21	35	10	33	1.87
52134915--52134973	3	19.3	3	73	16	50	61	5	1	32	1.28
52134916--52134978	19	3.2	20	76	12	67	60	6	3	30	1.37
52134924--52134963	14	2.9	14	88	7	55	62	2	2	32	1.22
52134915--52134973	11	5.7	10	79	15	50	61	5	1	32	1.28
52137263--52137349	44	2.0	44	90	0	138	13	14	18	52	1.74
52138097--52138123	3	9.0	3	100	0	54	0	33	0	66	0.92
52138993--52139032	20	2.1	19	90	4	62	25	2	27	45	1.66
52139362--52139394	17	1.9	17	100	0	66	24	6	21	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52143119--52143158	21	1.9	21	94	0	71	37	7	0	55	1.29
52146236--52146530	102	2.9	100	89	2	455	20	30	23	25	1.99
52146236--52146530	50	5.8	50	88	2	437	20	30	23	25	1.99
52146867--52146923	30	1.9	29	85	3	78	29	24	3	42	1.71
52148779--52148833	27	2.0	27	100	0	110	29	29	10	30	1.91
52150090--52150131	18	2.3	18	88	8	59	73	4	0	21	1.01
52150067--52150131	6	10.7	6	70	9	51	73	3	4	18	1.13
52152246--52152284	20	1.9	21	89	5	62	48	5	20	25	1.70
52155421--52155481	26	2.5	24	82	12	79	40	1	0	57	1.08
52155567--52155601	15	2.3	15	90	0	52	57	2	0	40	1.14
52156966--52157019	15	3.5	15	74	18	56	27	3	0	68	1.06
52173878--52173966	18	4.8	18	77	14	92	46	13	0	40	1.43
52173869--52173964	17	4.8	20	69	24	69	44	13	0	41	1.44
52173878--52173938	17	3.5	17	86	4	86	44	13	0	42	1.43
52173878--52173973	39	2.5	38	86	9	126	45	12	0	41	1.42
52174289--52174344	28	1.9	28	85	7	76	51	3	0	44	1.18
52174304--52174733	153	2.9	151	85	7	616	53	5	8	32	1.56
52175132--52175160	12	2.4	12	100	0	58	48	10	0	41	1.37
52175156--52175293	9	16.0	9	68	17	87	47	18	1	33	1.57
52175162--52175454	16	18.6	16	66	24	110	50	17	0	32	1.51
52175219--52175443	41	5.7	41	73	18	163	49	16	0	32	1.52
52175165--52175270	25	4.4	25	76	12	73	50	16	0	31	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52175264--52175434	23	7.3	23	68	17	84	50	15	0	32	1.49
52175292--52175364	21	3.4	21	73	14	76	52	15	0	32	1.43
52175325--52175447	7	16.7	7	71	24	69	53	15	0	30	1.48
52175280--52175470	51	3.9	47	84	13	219	51	15	0	32	1.48
52175325--52175472	51	2.9	51	94	2	251	52	15	0	31	1.48
52175183--52175488	25	12.8	25	64	22	67	50	16	0	33	1.50
52183996--52184041	22	2.1	22	83	0	56	58	0	4	36	1.18
52184102--52184141	18	2.2	19	86	4	55	35	2	32	30	1.71
52190498--52190539	19	2.2	19	83	8	50	50	16	16	16	1.79
52190862--52190918	27	2.1	27	90	0	87	45	22	7	24	1.77
52190862--52190918	9	6.3	9	85	0	69	45	22	7	24	1.77
52197278--52197315	20	1.9	20	88	0	58	60	0	5	34	1.19
52208377--52208432	19	3.1	19	82	10	64	33	0	8	57	1.30
52208377--52208431	18	3.1	18	82	15	53	34	0	9	56	1.31
52212519--52212544	3	8.7	3	100	0	52	69	0	30	0	0.89
52212551--52212611	3	20.3	3	89	0	95	27	0	39	32	1.57
52212699--52212789	42	2.2	42	98	2	175	49	10	20	18	1.78
52219323--52219563	50	4.7	50	86	3	284	26	21	30	21	1.99
52221228--52221278	15	3.3	15	83	8	57	47	1	19	31	1.61
52221241--52221287	15	3.1	15	81	3	58	48	0	14	36	1.44
52226093--52226283	101	1.9	101	81	4	233	33	16	24	26	1.96
52228379--52228405	7	3.9	7	100	0	54	59	11	0	29	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52228486--52228519	15	2.1	17	89	10	54	52	2	0	44	1.16
52228841--52228888	20	2.4	20	89	0	69	31	0	0	68	0.90
52231497--52231534	18	2.1	19	90	5	60	10	31	21	36	1.87
52232123--52232178	20	2.5	22	83	11	71	41	0	0	58	0.98
52234002--52234027	5	5.2	5	100	0	52	19	0	0	80	0.71
52238716--52239056	169	2.0	169	97	0	646	41	17	20	20	1.91
52246108--52246417	45	6.9	45	82	1	354	32	14	22	30	1.94
52246109--52246417	90	3.4	89	86	3	395	33	13	22	30	1.93
52251146--52251201	22	2.5	22	77	11	60	30	7	8	53	1.59
52252140--52252182	21	2.0	21	86	4	59	44	32	4	18	1.71
52253451--52253500	23	2.3	21	86	13	66	38	0	2	60	1.09
52258332--52258356	2	12.5	2	100	0	50	48	0	0	52	1.00
52262136--52262188	14	3.4	15	82	15	63	16	1	1	79	0.92
52262136--52262174	15	2.6	14	92	8	60	15	0	0	84	0.62
52262778--52262804	14	1.9	14	100	0	54	29	0	3	66	1.09
52262876--52262920	24	1.9	23	86	4	63	31	8	2	57	1.41
52262860--52262914	20	3.0	18	77	12	58	32	9	1	56	1.41
52263179--52263222	18	2.5	18	88	3	63	15	4	6	72	1.22
52266182--52266241	3	21.0	3	76	10	54	35	6	0	58	1.24
52296500--52296542	11	3.8	11	80	17	52	30	2	2	65	1.18
52299587--52299625	20	2.0	20	94	0	69	35	2	0	61	1.10
52304772--52304967	108	1.8	108	90	0	320	26	16	10	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52305453--52305715	44	6.0	44	76	4	219	27	14	26	30	1.95
52305451--52305723	132	2.1	133	92	2	453	29	14	26	30	1.95
52306013--52307035	132	7.8	132	90	1	1450	29	18	23	27	1.98
52306185--52306909	44	16.5	44	66	12	236	29	17	24	28	1.97
52307002--52307344	126	2.7	126	92	0	578	33	23	19	23	1.97
52306998--52307284	40	6.8	42	74	11	223	33	23	20	22	1.97
52313007--52313056	26	1.9	26	100	0	100	24	26	12	38	1.90
52318755--52318810	25	2.4	24	82	8	62	62	1	1	33	1.16
52329343--52329378	18	2.0	18	88	0	54	63	13	5	16	1.47
52336265--52336296	16	2.1	16	94	5	57	43	6	0	50	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204