genome.fa.s26.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  156  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47421165--47421215	23	2.1	23	82	7	57	25	5	7	60	1.47
47421393--47421425	15	2.2	15	94	0	57	24	0	12	63	1.28
47421699--47421895	98	2.0	98	95	0	358	28	9	23	37	1.87
47422423--47422498	29	2.6	27	76	15	73	30	5	3	60	1.37
47423783--47423817	17	2.1	17	94	0	61	40	17	8	34	1.80
47428318--47428416	51	1.9	51	100	0	198	23	36	14	26	1.93
47431787--47431967	41	4.5	41	64	18	119	41	0	4	52	1.27
47431862--47432029	38	4.3	37	66	18	88	45	1	4	48	1.34
47431781--47432186	120	3.4	120	94	1	690	43	1	5	49	1.33
47432132--47432166	18	2.0	17	88	5	52	45	0	0	54	0.99
47432323--47432419	45	2.2	45	83	5	117	35	27	5	31	1.79
47432399--47432447	16	3.1	16	90	0	80	22	34	4	38	1.73
47434519--47434585	31	2.2	31	91	5	109	38	13	5	41	1.69
47436533--47436580	19	2.5	19	93	0	87	27	4	33	35	1.76
47443884--47443935	25	2.1	25	96	0	95	46	1	25	26	1.63
47444789--47444921	17	7.9	17	76	1	142	20	9	26	43	1.82
47445088--47445140	26	2.0	27	85	3	72	24	11	30	33	1.90
47446846--47446990	38	3.8	38	85	0	209	37	18	15	28	1.91
47447793--47447824	12	2.7	12	95	0	55	31	31	25	12	1.92
47448801--47448839	3	13.0	3	100	0	78	33	0	0	66	0.92
47448988--47449021	4	9.0	4	87	12	54	52	0	0	47	1.00
47449323--47449360	9	4.2	9	93	0	58	26	10	26	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47454176--47454225	20	2.5	21	78	15	52	10	14	2	74	1.16
47454188--47454240	23	2.3	23	77	6	54	11	20	1	66	1.33
47456566--47456637	21	3.5	20	76	12	67	65	5	1	27	1.23
47456563--47456762	10	20.3	10	69	15	91	62	4	3	31	1.29
47456709--47456762	21	2.7	21	82	5	58	64	1	1	31	1.14
47457193--47457371	9	19.0	9	68	16	62	33	2	3	60	1.27
47457212--47457338	27	4.6	26	75	15	96	37	2	3	57	1.27
47457231--47457337	46	2.3	47	79	10	105	37	0	2	58	1.19
47457243--47457376	27	4.8	26	73	18	94	35	0	4	59	1.23
47460099--47460134	12	3.0	12	91	0	63	38	11	0	50	1.38
47460207--47460249	23	2.0	21	86	13	61	25	18	0	55	1.42
47460214--47460258	22	2.0	23	82	4	56	22	26	0	51	1.49
47461441--47461465	12	2.1	12	100	0	50	8	16	0	76	1.02
47462276--47462357	6	12.8	6	72	23	53	76	0	17	6	0.97
47462277--47462373	5	19.4	5	71	17	51	75	0	18	6	1.01
47462273--47462357	13	6.5	13	68	20	61	76	0	17	5	0.98
47462277--47462373	9	9.7	10	70	15	51	75	0	18	6	1.01
47462273--47462383	28	3.7	30	74	10	95	74	0	18	7	1.03
47467839--47467893	10	5.7	10	73	16	53	74	1	1	21	1.01
47467839--47467893	20	2.9	18	82	12	74	74	1	1	21	1.01
47467839--47467894	19	2.9	19	84	10	78	73	3	1	21	1.08
47468335--47468466	38	3.4	37	86	9	183	34	3	0	62	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47468343--47468488	40	3.7	40	90	7	217	32	2	0	65	1.07
47469043--47469074	3	10.7	3	100	0	64	0	34	31	34	1.58
47469038--47469086	9	5.4	9	90	0	53	8	36	22	32	1.84
47471077--47471125	22	2.2	23	88	3	73	48	2	2	46	1.25
47471074--47471131	22	2.9	21	73	16	61	46	3	3	46	1.36
47471180--47471260	18	4.5	19	64	22	57	40	2	8	48	1.47
47471120--47471359	112	2.1	112	91	1	383	40	7	7	45	1.60
47471401--47471432	15	2.1	15	100	0	64	25	0	25	50	1.50
47471416--47471468	27	2.0	27	100	0	106	24	0	33	41	1.55
47471387--47471564	95	1.9	95	95	0	320	21	0	33	43	1.57
47471496--47471554	15	4.1	15	73	20	63	22	0	32	45	1.52
47471507--47471591	27	3.1	27	98	0	161	23	0	37	38	1.55
47471412--47471684	122	2.2	122	95	0	485	21	0	34	42	1.58
47471618--47471649	15	2.1	15	100	0	64	25	0	25	50	1.50
47471629--47471685	27	2.1	27	93	3	98	21	0	40	38	1.53
47471531--47471728	94	2.1	94	93	2	344	19	1	34	44	1.58
47471754--47471798	7	6.4	7	87	12	58	53	0	0	46	1.00
47471770--47471798	8	3.8	8	95	4	51	51	0	0	48	1.00
47471986--47472024	20	1.9	21	89	5	62	2	15	46	35	1.60
47472966--47472998	7	4.7	7	100	0	66	57	15	0	27	1.38
47474094--47474128	18	1.9	18	94	0	61	60	0	0	40	0.97
47474090--47474137	19	2.3	22	82	13	66	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47474135--47474234	51	2.0	51	88	4	148	46	2	26	26	1.64
47474196--47474256	11	5.5	11	82	5	79	44	1	31	22	1.63
47474194--47474256	33	1.9	33	90	6	101	44	1	30	23	1.63
47475041--47475095	27	2.0	28	92	3	94	32	23	10	32	1.90
47477222--47477253	15	2.1	16	88	11	50	53	21	3	21	1.60
47483165--47483459	95	3.1	95	78	3	308	35	20	16	26	1.94
47483968--47484010	21	2.2	19	83	8	50	37	6	0	55	1.27
47485578--47485679	36	2.7	36	83	6	114	33	25	18	22	1.97
47485665--47485791	36	3.6	35	71	10	96	35	21	22	21	1.96
47494776--47494818	16	2.7	15	79	10	50	48	0	0	51	1.00
47494769--47494823	26	2.1	27	80	16	62	47	1	0	50	1.11
47503608--47503712	24	4.3	24	68	10	70	34	19	26	20	1.96
47504207--47504236	10	2.8	11	90	10	53	36	26	0	36	1.57
47508279--47508326	21	2.3	21	78	7	53	50	14	14	20	1.78
47508656--47508731	39	1.9	39	91	0	125	32	21	17	28	1.95
47508762--47508795	12	2.7	13	86	9	52	44	0	5	50	1.26
47508769--47508795	12	2.2	12	100	0	54	44	0	7	48	1.31
47508884--47508943	26	2.2	27	85	5	77	10	16	3	70	1.29
47509273--47509302	3	10.0	3	100	0	60	66	0	0	33	0.92
47515535--47515572	18	2.2	18	86	9	53	68	0	7	23	1.16
47534544--47534587	20	2.2	20	95	0	79	65	4	18	11	1.40
47535333--47535357	13	1.9	13	100	0	50	24	0	4	72	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47547347--47547881	184	2.9	183	87	1	730	28	8	19	43	1.80
47547455--47547742	91	3.1	91	66	7	249	27	9	19	43	1.82
47550746--47550805	26	2.3	26	79	0	75	36	23	23	16	1.94
47553614--47553654	21	2.0	21	81	18	50	39	17	14	29	1.89
47555848--47555872	8	3.1	8	100	0	50	24	0	0	76	0.80
47555855--47555912	22	2.6	23	78	15	75	18	5	1	74	1.10
47559457--47559487	14	2.1	15	94	5	55	77	9	0	12	0.99
47560251--47560364	45	2.5	45	84	0	129	39	15	21	22	1.92
47560384--47560450	35	1.9	35	84	6	91	52	8	16	22	1.71
47561925--47561985	28	2.2	28	87	0	86	44	4	14	36	1.67
47561948--47562055	13	8.2	12	73	19	74	44	1	17	36	1.60
47561946--47562000	28	2.0	28	85	7	76	49	1	14	34	1.54
47561945--47562060	40	2.9	41	87	3	146	46	1	17	34	1.58
47562889--47562933	20	2.2	20	92	0	72	26	0	26	46	1.53
47570196--47570237	21	2.0	21	90	0	66	19	38	19	23	1.93
47571298--47571418	41	3.0	41	78	0	134	30	24	23	20	1.99
47571297--47571439	41	3.5	41	75	11	125	30	25	22	21	1.99
47571296--47571450	82	1.9	82	81	5	188	30	25	22	21	1.98
47576122--47576217	23	4.1	23	76	6	68	41	20	18	18	1.90
47577431--47577490	16	3.7	16	68	12	50	51	0	1	46	1.10
47585049--47585100	25	2.1	24	89	3	77	17	23	21	38	1.93
47585430--47585487	17	3.5	17	69	23	52	43	3	17	36	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47595596--47595639	19	2.3	19	96	0	79	59	6	0	34	1.24
47599574--47599599	5	5.2	5	100	0	52	19	0	0	80	0.71
47600307--47600513	45	4.6	45	83	1	238	25	23	20	30	1.99
47600307--47600513	89	2.3	89	82	3	238	25	23	20	30	1.99
47600522--47600642	44	2.8	44	81	3	129	28	17	20	33	1.95
47600770--47600870	44	2.4	43	80	8	118	30	19	21	27	1.98
47600919--47601492	88	6.5	88	87	0	779	20	24	26	28	1.99
47607338--47607386	13	3.6	13	79	17	55	69	4	4	22	1.23
47623719--47623748	14	2.2	14	94	5	53	40	13	6	40	1.71
47634191--47634234	18	2.4	18	84	3	52	63	11	2	22	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204