genome.fa.s26.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  21  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6116732--6116810	31	2.5	31	93	0	140	13	39	27	18	1.89
6126621--6128257	44	36.8	44	71	9	842	28	21	18	31	1.97
6126621--6127189	223	2.5	223	84	3	730	29	21	17	31	1.96
6126927--6127321	181	2.2	182	85	1	517	29	20	17	32	1.96
6126666--6127989	404	3.3	400	82	5	1454	28	21	18	31	1.97
6127072--6127676	223	2.7	223	84	4	752	29	20	18	31	1.97
6127478--6127989	174	2.9	175	81	5	559	27	23	18	29	1.98
6127605--6128167	268	2.1	264	86	2	759	27	24	18	30	1.98
6127871--6128267	178	2.2	178	90	0	614	26	23	18	30	1.98
6129509--6129604	49	1.9	50	93	2	167	12	21	22	42	1.87
6130528--6130565	18	2.2	18	90	4	60	0	21	0	78	0.74
6130583--6130651	31	2.2	30	87	12	104	23	2	2	71	1.14
6130584--6130651	32	2.2	31	92	7	111	22	2	2	72	1.12
6134489--6134613	4	31.8	4	96	3	236	24	0	24	50	1.50
6135589--6135613	7	3.6	7	100	0	50	0	16	0	84	0.63
6141569--6141649	27	3.0	27	92	3	135	30	13	16	39	1.87
6141569--6141649	28	2.9	28	94	1	137	30	13	16	39	1.87
6145653--6145811	44	3.6	44	75	5	126	25	24	20	28	1.99
6145592--6146131	218	2.5	217	85	0	677	28	22	18	30	1.98
6146127--6146765	128	4.9	128	86	3	700	26	24	18	30	1.98
6146127--6146765	132	4.9	128	83	6	670	26	24	18	30	1.98
6146538--6146720	44	4.2	44	66	8	129	26	24	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6147998--6148026	8	3.8	8	90	9	51	10	13	0	75	1.04
6147992--6148026	15	2.3	15	95	0	61	14	11	0	74	1.08
6151726--6151920	108	1.8	106	88	2	300	35	17	16	30	1.93
6152850--6152937	3	29.3	3	81	0	86	59	3	6	30	1.40
6157222--6157258	10	3.6	10	85	7	56	83	0	10	5	0.79
6158906--6158930	5	5.0	5	100	0	50	80	0	0	20	0.72
6159142--6159174	16	2.1	16	88	11	50	48	0	0	51	1.00
6160744--6160820	9	8.6	9	76	13	61	70	1	1	27	1.03
6160750--6160871	29	4.3	27	73	19	97	63	3	2	30	1.23
6161147--6161217	19	3.7	18	80	10	54	26	8	1	63	1.31
6161166--6161219	19	2.8	20	81	13	76	27	7	1	62	1.32
6161108--6161199	29	3.1	30	70	16	77	29	7	1	61	1.30
6161243--6161304	28	2.3	27	83	8	72	37	0	1	61	1.06
6164711--6164796	24	3.6	24	98	0	163	32	41	4	20	1.73
6165913--6165976	32	2.0	32	90	3	103	15	4	20	59	1.54
6166330--6166356	14	1.9	14	100	0	54	40	7	7	44	1.60
6166351--6166412	20	3.1	19	81	9	70	37	16	3	43	1.64
6174166--6174208	22	2.0	21	86	13	61	23	11	9	55	1.64
6182115--6182162	7	6.6	7	95	2	60	16	0	39	43	1.48
6182153--6182196	20	2.2	20	88	8	63	20	4	6	68	1.31
6183508--6183562	25	2.2	25	86	0	74	40	9	16	34	1.80
6189367--6189432	22	3.0	21	74	12	62	43	16	22	16	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6189455--6189561	32	3.4	31	81	10	117	38	21	19	20	1.94
6189696--6189802	32	3.4	31	81	5	124	37	21	19	21	1.95
6189438--6189922	241	2.0	241	95	0	873	33	23	21	22	1.98
6189973--6190059	24	3.6	24	78	4	77	45	18	8	27	1.77
6192998--6193060	22	2.9	21	78	4	63	44	15	20	19	1.87
6193063--6193190	32	4.0	32	77	8	125	35	21	21	21	1.96
6193083--6193192	32	3.4	32	77	14	127	34	21	22	20	1.97
6193366--6193419	24	2.2	24	83	0	63	46	20	9	24	1.79
6193377--6193447	24	3.0	24	78	0	79	43	19	8	28	1.80
6193491--6193582	27	3.4	27	73	10	89	21	18	18	41	1.91
6199566--6199630	21	3.8	17	74	23	55	46	1	3	49	1.27
6199573--6199619	21	2.2	21	100	0	94	48	0	4	46	1.21
6199592--6199631	15	2.6	15	88	4	53	47	2	2	47	1.29
6201672--6201712	14	2.6	16	81	14	50	68	2	12	17	1.31
6202484--6202528	22	2.1	21	87	4	63	11	11	8	68	1.39
6203034--6203095	25	2.5	25	79	10	65	27	16	12	43	1.84
6203056--6203105	12	4.1	12	76	5	55	32	16	6	46	1.71
6203662--6203786	25	4.9	25	73	17	87	52	8	12	27	1.67
6203667--6203793	12	9.8	12	66	16	58	51	8	13	25	1.69
6203729--6203793	14	4.6	14	75	7	60	55	7	12	24	1.63
6203782--6203821	21	1.9	21	85	10	55	65	7	12	15	1.47
6204040--6204099	29	2.0	32	83	9	81	18	26	6	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6205124--6205181	6	9.3	6	82	14	55	74	0	3	22	0.97
6205125--6205181	19	3.1	18	78	16	55	73	0	3	22	0.98
6208676--6208732	13	4.2	13	73	10	51	56	7	14	22	1.62
6209545--6209599	27	2.0	26	82	6	65	40	3	3	52	1.36
6212936--6212970	15	2.3	15	100	0	70	42	28	0	28	1.56
6225657--6225683	2	13.5	2	100	0	54	51	0	0	48	1.00
6225866--6225911	14	3.5	14	71	17	53	65	0	4	30	1.12
6225894--6225937	23	1.9	23	86	9	63	61	2	6	29	1.34
6225910--6225948	16	2.4	17	91	4	62	58	7	5	28	1.47
6228312--6228368	30	1.9	29	89	3	87	33	12	3	50	1.57
6234541--6235112	100	5.7	100	87	0	766	32	22	21	23	1.98
6234550--6235112	50	11.2	50	69	4	290	33	22	21	22	1.98
6236348--6236378	16	1.9	16	93	0	53	19	6	0	74	1.03
6236544--6236574	16	1.9	16	93	0	53	0	9	3	87	0.66
6237206--6237252	18	2.7	17	78	12	51	36	6	2	55	1.37
6245867--6245908	18	2.3	18	91	0	66	47	7	16	28	1.73
6251890--6252274	191	2.0	193	98	1	747	32	17	23	26	1.96
6260390--6260682	50	5.8	50	86	0	361	20	31	21	26	1.98
6267700--6267895	103	1.9	101	86	4	277	30	14	24	30	1.95
6267735--6267894	33	4.7	33	67	14	92	30	15	25	29	1.95
6267835--6267912	33	2.4	32	80	6	84	33	16	23	26	1.96
6267732--6267927	103	1.9	103	83	4	252	31	15	25	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6271115--6271206	33	2.8	34	81	3	107	32	18	25	23	1.97
6277859--6278263	27	15.1	26	81	5	414	19	16	20	43	1.88
6279547--6279590	17	2.5	19	82	10	58	15	4	2	77	1.04
6282297--6282363	32	2.1	32	94	0	116	34	16	4	44	1.68
6283733--6283891	42	3.7	43	74	10	146	26	15	25	32	1.96
6286341--6286367	11	2.5	11	100	0	54	48	0	0	51	1.00
6286354--6286398	20	2.2	21	84	4	56	31	2	2	64	1.18
6290697--6290855	42	3.7	43	75	10	155	26	16	25	32	1.96
6294658--6294696	21	1.9	20	89	5	60	20	7	7	64	1.45
6295055--6295103	24	2.0	26	84	8	66	61	10	8	20	1.53
6297447--6297486	13	2.9	14	82	17	57	67	5	7	20	1.34
6298204--6298259	24	2.4	24	87	3	78	58	1	5	33	1.31
6300186--6300820	169	3.8	168	87	2	871	29	26	14	29	1.96
6301614--6301638	12	2.1	12	100	0	50	36	8	32	24	1.84
6304821--6305069	50	4.8	50	83	5	293	20	28	24	26	1.99
6304820--6305069	100	2.4	105	87	6	350	20	28	24	26	1.99
6305164--6305195	13	2.5	13	94	0	55	56	12	0	31	1.37
6307752--6307825	30	2.5	30	100	0	148	41	9	9	39	1.70
6309558--6309606	13	3.5	14	81	15	57	71	6	2	20	1.18
6311562--6311600	21	1.9	20	84	5	51	35	0	2	61	1.10
6315203--6315239	18	2.1	18	100	0	74	0	32	21	45	1.52
6323965--6324013	22	2.2	23	96	3	91	28	14	6	51	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6329278--6329365	44	2.0	44	84	4	115	63	3	2	30	1.23
6329653--6329756	9	11.4	9	85	6	120	43	24	7	25	1.80
6329863--6329906	18	2.4	18	88	0	61	18	2	38	40	1.63
6331835--6331886	3	17.3	3	76	7	52	63	0	3	32	1.12
6333824--6333911	43	2.0	43	100	0	176	51	9	9	30	1.65
6347234--6347282	3	16.3	3	79	8	55	65	0	4	30	1.11
6349218--6349305	43	2.0	43	100	0	176	51	9	9	30	1.65
6365436--6365536	24	4.2	24	76	0	85	23	16	16	42	1.88
6365408--6365547	72	1.9	72	85	2	192	26	17	17	37	1.93
6366007--6366050	23	1.9	23	95	0	79	43	25	4	27	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204