genome.fa.s26.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  131  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40392763--40392802	17	2.3	18	83	12	57	47	5	0	47	1.24
40392881--40392932	15	3.6	15	80	12	56	44	0	1	53	1.11
40392749--40393046	118	2.5	118	89	5	455	41	2	5	50	1.39
40392871--40393046	59	3.0	56	67	15	149	42	1	5	50	1.34
40393008--40393049	15	2.7	16	82	14	52	45	0	2	52	1.13
40392999--40393040	15	2.9	15	82	10	52	47	0	0	52	1.00
40392984--40393296	154	2.0	155	95	2	567	46	5	3	44	1.41
40393149--40393183	18	2.0	17	88	5	52	45	0	0	54	0.99
40393416--40393454	16	2.4	16	86	0	51	28	33	2	35	1.71
40393429--40393485	16	3.6	16	95	0	87	33	36	0	29	1.58
40394999--40395036	17	2.3	17	90	4	60	55	2	26	15	1.54
40396928--40396954	6	4.5	6	100	0	54	14	0	0	85	0.61
40408075--40408120	12	3.6	13	83	13	60	45	10	19	23	1.82
40423690--40423810	20	6.1	20	84	0	143	8	24	25	41	1.83
40423694--40423809	60	1.9	60	87	0	169	8	25	25	40	1.84
40425491--40425877	193	2.0	193	98	0	747	26	21	15	36	1.93
40431161--40431264	32	3.3	32	84	1	129	38	18	20	23	1.93
40431425--40431570	24	6.1	24	87	0	193	46	21	6	25	1.75
40433755--40433787	17	1.9	17	93	0	57	42	6	12	39	1.67
40434813--40434845	17	1.9	17	93	0	57	42	15	0	42	1.46
40435844--40435881	13	2.8	14	80	19	53	65	5	5	23	1.34
40435969--40436002	16	2.1	17	88	5	52	82	5	0	11	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40436273--40436355	30	2.7	31	78	14	91	57	6	2	33	1.36
40436492--40436535	17	2.6	17	85	3	63	47	0	11	40	1.39
40436979--40437055	19	3.7	21	80	13	68	38	16	6	37	1.75
40436979--40437036	22	2.6	22	81	7	64	39	17	5	37	1.72
40437015--40437064	19	2.6	19	100	0	100	36	16	12	36	1.85
40441529--40441578	23	2.2	23	82	13	59	36	0	0	64	0.94
40441523--40441576	16	3.1	17	78	13	56	38	0	0	61	0.96
40443325--40443380	29	2.0	28	85	3	76	33	7	23	35	1.82
40449733--40449763	12	2.5	13	89	10	55	32	12	0	54	1.38
40450382--40450408	8	3.4	8	100	0	54	55	0	0	44	0.99
40451462--40451505	20	2.2	20	100	0	88	34	13	13	38	1.84
40458630--40458680	24	2.1	24	82	7	59	31	13	15	39	1.87
40462399--40462434	18	2.0	18	94	0	63	22	25	22	30	1.99
40469217--40469291	28	2.7	28	76	0	78	25	25	22	26	2.00
40473902--40474066	66	2.5	66	84	2	206	26	25	25	22	2.00
40476766--40476836	17	4.4	17	71	18	62	28	23	26	21	1.99
40476756--40476814	30	2.0	30	89	0	91	28	28	25	16	1.97
40477163--40477197	5	6.8	5	93	6	61	20	0	0	80	0.72
40477153--40477194	10	3.7	11	87	12	59	19	0	2	78	0.86
40478452--40478478	9	3.0	9	100	0	54	11	11	33	44	1.75
40480276--40480308	16	2.1	16	88	11	50	57	0	3	39	1.14
40481462--40481539	42	1.9	42	84	7	108	64	7	2	25	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40482042--40482099	19	3.0	19	85	5	80	31	0	5	63	1.16
40482050--40482112	19	3.1	20	77	9	74	31	3	4	60	1.33
40482259--40482342	33	2.6	32	92	1	132	26	2	36	34	1.70
40482258--40482342	16	5.2	16	92	2	134	25	2	36	35	1.69
40482323--40482413	45	2.0	45	85	2	121	27	6	28	37	1.82
40482578--40482612	18	2.0	17	88	5	52	54	0	0	45	0.99
40482698--40482731	17	2.0	17	88	0	50	52	0	0	47	1.00
40482561--40482964	119	3.4	119	94	2	679	48	4	2	44	1.39
40482987--40483194	91	2.3	91	84	5	233	46	4	3	45	1.42
40489633--40489864	40	5.8	40	82	5	290	26	21	25	26	1.99
40489633--40489864	80	2.9	79	87	2	322	26	21	25	26	1.99
40490040--40490091	25	2.1	25	85	7	70	28	7	32	30	1.85
40493708--40494164	47	9.7	47	95	0	774	32	8	29	28	1.87
40494283--40494361	37	2.1	37	90	0	122	24	18	31	25	1.98
40495473--40495882	47	8.7	47	94	1	680	32	8	29	28	1.87
40495473--40495882	187	2.2	188	92	1	689	32	8	29	28	1.87
40496001--40496079	37	2.1	37	90	0	122	24	18	31	25	1.98
40508939--40508982	18	2.5	17	82	17	54	34	0	20	45	1.51
40509208--40509329	23	5.3	23	85	2	165	22	20	26	31	1.98
40509208--40509329	46	2.7	46	90	2	192	22	20	26	31	1.98
40513531--40513670	73	1.9	73	92	0	235	37	17	16	29	1.91
40514114--40514180	23	2.9	23	77	2	62	49	2	8	38	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40514228--40514323	3	31.0	3	72	8	59	60	3	8	28	1.41
40514269--40514337	21	3.3	21	83	0	75	59	2	5	31	1.36
40515999--40516243	131	1.9	132	91	2	404	25	25	20	28	1.99
40516306--40516455	50	3.0	51	81	2	167	32	28	12	28	1.92
40516482--40516641	87	1.8	87	84	5	216	30	22	19	28	1.98
40516479--40516843	138	2.6	138	83	2	430	29	20	18	31	1.96
40516718--40517004	51	5.5	51	78	6	227	26	21	18	33	1.96
40516694--40517023	159	2.1	159	88	1	482	26	22	17	33	1.96
40518479--40518541	6	10.7	6	79	14	60	1	19	0	79	0.82
40523013--40523156	73	2.0	73	92	0	243	34	15	19	29	1.93
40523746--40523792	18	2.6	18	82	0	58	61	4	6	27	1.39
40525525--40525559	17	2.1	17	89	5	54	40	0	8	51	1.33
40534083--40534112	10	3.0	10	95	0	51	86	0	13	0	0.57
40534084--40534113	15	2.1	14	93	6	51	90	0	10	0	0.47
40552393--40552429	18	2.1	18	89	0	56	32	29	0	37	1.58
40554190--40554233	3	14.7	3	100	0	88	31	0	0	68	0.90
40555738--40555770	16	2.1	16	88	11	50	48	9	9	33	1.66
40566721--40567065	171	2.0	171	98	0	672	29	13	13	43	1.83
40568769--40569020	86	2.9	87	78	7	246	42	13	11	32	1.80
40572591--40572670	22	3.5	23	80	14	85	40	20	22	17	1.92
40572631--40572691	25	2.4	25	88	0	86	40	18	21	19	1.91
40572591--40572681	47	2.0	44	85	6	119	38	19	21	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40577622--40577656	17	2.1	17	89	5	54	57	8	17	17	1.64
40578016--40578049	17	1.9	18	88	5	52	50	5	11	32	1.63
40578700--40578857	41	3.9	41	78	6	167	20	18	26	34	1.96
40578700--40578854	82	1.9	82	82	5	197	20	18	26	34	1.96
40580387--40580424	18	2.2	17	86	9	51	21	7	2	68	1.28
40582750--40582798	20	2.5	19	87	12	73	59	2	2	36	1.21
40583365--40583457	40	2.3	38	85	7	114	41	1	2	54	1.19
40596680--40596791	51	2.2	51	86	0	152	28	20	24	26	1.99
40601276--40601317	18	2.3	19	83	4	50	19	9	4	66	1.38
40601284--40601322	19	2.1	19	85	9	53	17	7	7	66	1.40
40601627--40601690	24	2.6	24	76	16	60	32	10	1	54	1.45
40611641--40611670	10	3.0	10	95	0	51	10	46	3	40	1.54
40621396--40621455	21	2.9	21	85	11	72	36	3	0	60	1.14
40621399--40621469	10	6.8	10	75	13	63	39	2	0	57	1.13
40621396--40621455	20	3.0	20	87	7	77	36	3	0	60	1.14
40623119--40623149	13	2.5	13	94	5	55	3	35	0	61	1.12
40625339--40625496	34	4.6	34	76	4	147	27	12	16	43	1.83
40634482--40634527	22	2.1	22	100	0	92	8	21	4	65	1.38
40650714--40650786	19	3.5	19	70	20	65	41	36	1	20	1.61
40651322--40651362	8	5.0	8	94	5	73	26	12	24	36	1.91
40651322--40651360	17	2.4	17	95	4	71	28	10	25	35	1.89
40652184--40652411	115	2.0	114	81	7	266	35	25	10	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40652503--40652533	9	3.4	9	90	0	53	25	12	22	38	1.90
40652587--40652623	9	4.1	9	89	0	56	45	10	10	32	1.74
40652807--40652864	30	1.9	30	85	0	80	20	36	0	43	1.52
40653626--40653662	5	7.4	5	100	0	74	21	18	18	40	1.91
40655944--40655979	2	18.0	2	100	0	72	0	50	0	50	1.00
40659511--40659537	9	3.0	9	100	0	54	44	11	11	33	1.75
40660425--40660450	5	5.2	5	100	0	52	23	19	19	38	1.93
40665886--40665916	8	4.0	8	91	8	55	90	9	0	0	0.46
40665883--40665915	15	2.2	15	100	0	66	93	6	0	0	0.33
40666348--40666399	23	2.3	23	83	6	70	80	1	15	1	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204