genome.fa.s26.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  54  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15837721--15837763	16	2.7	16	92	0	68	41	0	27	30	1.56
15837980--15838051	10	6.6	10	76	16	63	50	2	0	47	1.15
15837992--15838049	11	5.2	11	73	22	50	50	1	0	48	1.11
15837981--15838049	22	3.0	22	78	19	79	47	2	0	49	1.16
15838053--15838109	15	3.7	15	71	17	53	47	1	1	49	1.22
15840488--15840547	18	3.4	18	67	15	54	38	5	0	56	1.21
15842800--15842870	28	2.5	29	86	2	99	32	23	12	30	1.92
15845853--15845914	29	2.1	29	84	3	79	30	20	4	43	1.73
15849967--15850022	29	1.9	29	88	0	85	44	5	21	28	1.74
15853200--15853446	127	2.0	126	86	4	354	32	13	16	37	1.87
15860877--15860964	43	2.0	44	97	2	169	22	31	11	34	1.90
15864614--15864646	9	3.9	9	88	11	52	42	0	0	57	0.98
15869021--15869099	42	1.9	41	84	2	104	35	24	12	27	1.92
15874722--15874768	24	2.1	23	84	11	62	53	0	4	42	1.20
15880438--15880481	9	4.6	9	85	8	52	29	2	4	63	1.26
15880438--15880481	19	2.3	19	84	11	54	29	2	4	63	1.26
15880447--15880490	19	2.4	18	82	14	54	25	4	6	63	1.38
15880869--15880955	40	2.1	40	85	8	111	14	14	9	60	1.57
15882243--15882301	30	2.0	29	87	9	84	59	0	1	38	1.08
15882882--15882925	10	4.5	10	81	16	56	38	2	0	59	1.10
15882974--15883065	38	2.4	39	80	8	100	36	6	1	55	1.33
15882974--15883091	48	2.4	48	77	13	134	34	5	1	57	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15883186--15883220	16	2.1	17	89	5	54	34	0	0	65	0.93
15886178--15886217	16	2.5	16	87	0	53	65	2	10	22	1.35
15888592--15888665	25	3.0	25	87	0	103	29	17	27	25	1.97
15888601--15888690	25	3.6	24	86	5	92	30	17	26	25	1.98
15890225--15890468	44	5.5	44	79	1	218	32	17	15	35	1.91
15890175--15890468	44	6.6	45	74	8	201	31	18	15	34	1.92
15890175--15890468	89	3.3	89	81	5	301	31	18	15	34	1.92
15892960--15893185	53	4.2	53	89	2	312	28	14	21	35	1.92
15896810--15896864	23	2.4	23	81	6	58	47	1	0	50	1.11
15898492--15898524	13	2.6	13	90	4	50	36	6	27	30	1.81
15921144--15921215	25	2.9	24	76	10	65	31	20	20	26	1.98
15921178--15921279	25	4.1	25	81	0	132	37	20	22	19	1.95
15925663--15925725	26	2.4	27	89	2	92	36	0	1	61	1.05
15927021--15927093	27	2.7	27	91	0	110	36	12	26	24	1.91
15940635--15940677	17	2.4	18	88	7	61	65	11	2	20	1.36
15944986--15945046	30	2.0	30	100	0	122	27	22	13	36	1.92
15948218--15948243	11	2.4	11	100	0	52	38	7	0	53	1.30
15948242--15948307	17	4.0	17	72	7	64	34	1	0	63	1.04
15948229--15948344	32	3.7	31	85	7	137	36	2	0	61	1.10
15960875--15960927	25	2.2	24	87	12	74	49	20	16	13	1.79
15961277--15961328	24	2.2	24	89	0	77	50	9	3	36	1.54
15969556--15969840	141	2.0	141	100	0	570	37	17	19	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15970288--15970336	22	2.2	22	77	0	53	18	8	10	63	1.50
15971630--15971680	20	2.5	21	81	12	61	58	1	0	39	1.09
15979682--15979724	19	2.3	19	80	19	54	41	0	0	58	0.98
15980162--15980212	24	2.1	25	92	3	86	35	11	5	47	1.65
15980270--15980299	16	1.9	15	93	6	51	40	0	0	60	0.97
15985334--15985423	45	2.0	45	93	0	153	38	14	24	22	1.91
15985576--15985648	32	2.5	27	78	19	92	26	2	19	52	1.59
15985589--15985649	32	1.9	32	96	0	113	27	3	18	50	1.62
15986901--15986937	18	2.1	18	100	0	74	56	0	0	43	0.99
15992746--15992782	18	2.1	19	85	10	51	29	5	24	40	1.77
15995872--15995940	25	2.7	25	84	2	84	17	30	18	33	1.94
15995880--15995948	25	2.8	25	88	0	93	18	27	18	34	1.95
16004528--16004576	24	2.0	24	84	8	62	34	2	2	61	1.19
16009050--16009083	12	2.8	12	100	0	68	44	0	0	55	0.99
16014638--16014682	23	1.9	24	86	13	67	71	2	4	22	1.15
16025948--16026131	51	3.6	50	81	6	192	26	16	25	31	1.97
16025895--16026139	101	2.4	100	83	2	303	27	16	25	30	1.97
16029232--16029284	23	2.4	22	76	20	56	9	24	1	64	1.34
16031989--16032112	40	3.2	38	67	10	88	38	21	18	20	1.93
16031989--16032125	39	3.5	38	70	9	98	39	22	18	18	1.92
16032160--16032486	41	8.0	41	83	3	415	17	20	27	34	1.95
16032703--16032752	22	2.3	21	82	3	55	30	0	30	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16032744--16032822	22	3.6	22	79	5	72	25	1	40	32	1.64
16032642--16033228	294	2.0	290	84	7	763	28	2	27	42	1.68
16033516--16033574	25	2.3	25	85	2	73	74	1	3	20	1.05
16035161--16035214	19	2.9	18	83	10	65	38	1	0	59	1.08
16037478--16037534	27	2.2	26	81	9	62	29	5	3	61	1.35
16037721--16037863	43	3.4	42	83	8	166	21	17	30	30	1.96
16040148--16040220	36	2.0	36	100	0	146	39	10	13	35	1.80
16042459--16042705	101	2.5	100	83	2	298	27	16	25	30	1.97
16042514--16042697	51	3.6	50	80	5	208	26	17	25	30	1.97
16044874--16044906	17	1.9	17	93	0	57	39	18	0	42	1.50
16064685--16064725	17	2.4	17	88	12	57	82	0	14	2	0.76
16064684--16064740	20	2.9	19	77	10	62	78	0	15	5	0.91
16067542--16067623	30	2.7	30	90	1	128	32	6	23	37	1.79
16067945--16068039	45	2.1	45	92	0	163	26	18	24	30	1.98
16072363--16072516	29	5.3	29	81	4	150	26	16	19	37	1.92
16074290--16074413	28	4.2	30	79	16	136	29	25	24	21	1.99
16074325--16074413	28	3.2	28	95	0	160	29	24	24	21	1.99
16074287--16074413	56	2.2	60	87	7	181	29	25	24	21	1.99
16074501--16074601	26	3.9	26	89	0	157	39	23	18	17	1.92
16074804--16074973	81	2.1	81	87	2	243	21	22	19	36	1.95
16074754--16074973	27	8.1	27	82	7	207	20	21	20	37	1.95
16077359--16077393	18	1.9	18	94	0	61	48	2	17	31	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16079055--16079124	34	2.1	34	100	0	140	35	20	2	41	1.67
16079301--16079361	31	2.0	31	96	0	113	21	26	21	31	1.98
16083953--16083992	20	2.0	21	90	5	64	75	0	5	20	0.99
16085081--16085114	18	1.9	18	94	5	61	17	5	0	76	0.98
16085304--16085353	17	3.0	17	76	2	57	22	4	4	70	1.21
16085443--16085488	21	2.1	22	84	11	60	39	0	2	58	1.10
16088963--16088994	16	2.0	16	93	0	55	25	21	6	46	1.74
16091211--16091263	27	2.0	27	84	0	70	15	15	37	32	1.88
16093281--16093373	27	3.4	27	84	0	114	35	15	24	24	1.94
16093296--16093392	27	3.6	27	84	2	115	34	14	27	23	1.94
16093281--16093392	54	2.1	53	85	6	145	35	14	25	24	1.93
16096077--16096115	20	2.0	20	90	10	62	15	23	5	56	1.59
16096425--16096552	50	2.4	52	83	7	152	25	33	17	24	1.96
16096425--16096558	56	2.6	50	83	7	151	25	32	18	23	1.97
16096664--16096708	22	2.1	21	83	4	54	51	11	4	33	1.58
16102492--16102606	55	2.1	55	100	0	230	33	20	10	35	1.86
16108687--16108826	27	5.1	27	81	0	163	37	15	22	23	1.93
16108804--16108883	27	3.0	27	90	1	126	35	10	26	28	1.89
16110338--16110404	27	2.5	27	85	4	82	28	13	23	34	1.93
16111937--16111986	26	1.9	26	87	0	73	38	10	22	30	1.86
16113146--16113210	21	3.1	21	73	2	51	41	16	24	16	1.89
16113167--16113281	42	2.7	43	76	18	109	42	19	20	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16114707--16114860	27	5.8	27	81	3	172	38	12	22	25	1.89
16114707--16114860	26	5.8	27	80	3	154	38	12	22	25	1.89
16114718--16114846	53	2.4	53	86	7	165	40	13	21	24	1.89
16118697--16118772	23	3.3	23	86	0	116	30	26	21	22	1.99
16126033--16126131	23	4.3	23	90	0	153	31	26	21	21	1.98
16128641--16128897	47	5.4	47	91	3	365	32	8	31	27	1.88
16128795--16128869	22	3.3	22	65	17	62	32	10	30	26	1.90
16133219--16133280	27	2.3	26	78	10	72	24	24	19	32	1.98
16136170--16136229	20	3.0	20	76	11	61	38	5	5	51	1.45
16141089--16141129	20	2.0	20	85	0	55	9	31	19	39	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204