genome.fa.s26.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  190  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56474292--56474348	29	2.0	29	89	0	87	40	14	14	31	1.85
56475628--56475727	50	2.0	50	100	0	200	42	18	8	32	1.79
56476123--56476159	3	12.3	3	100	0	74	64	0	0	35	0.94
56478527--56478558	6	5.3	6	96	0	55	18	53	0	28	1.45
56482680--56482738	31	1.9	31	83	13	77	42	13	11	32	1.81
56483471--56483527	25	2.3	25	77	14	64	50	5	1	42	1.35
56483743--56483769	11	2.5	11	100	0	54	74	0	0	25	0.83
56503445--56503470	6	4.3	6	100	0	52	34	34	15	15	1.89
56507635--56507671	19	1.9	19	88	0	56	51	0	0	48	1.00
56507650--56507723	29	2.5	29	82	8	80	58	4	0	37	1.17
56508931--56508955	3	8.3	3	100	0	50	0	0	64	36	0.94
56516325--56516367	20	2.2	20	87	8	61	67	4	0	27	1.10
56516340--56516399	32	1.9	32	83	12	81	61	5	0	33	1.17
56517491--56517539	21	2.3	21	82	6	55	51	0	0	48	1.00
56534811--56534843	12	2.5	14	90	9	52	78	3	3	15	0.99
56537296--56537333	19	2.1	19	85	5	51	71	5	0	23	1.07
56542908--56543006	28	3.5	28	94	4	164	38	12	0	49	1.40
56543578--56543638	19	3.3	18	76	4	59	42	8	0	49	1.32
56543586--56543638	18	2.9	18	75	11	54	41	9	0	49	1.35
56544128--56544184	27	2.2	26	96	3	105	17	26	31	24	1.97
56544227--56544325	28	3.5	28	94	4	164	49	0	12	38	1.40
56547793--56547822	14	2.1	14	93	0	51	30	13	26	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56552771--56552833	6	10.7	6	75	14	51	66	1	1	30	1.10
56552773--56552841	30	2.3	30	82	12	79	68	2	1	27	1.13
56555034--56555058	4	6.2	4	100	0	50	24	48	0	28	1.52
56562309--56562372	4	16.0	4	85	0	83	50	18	3	28	1.62
56563313--56563352	21	2.0	21	90	5	64	45	10	0	45	1.37
56565805--56565873	18	3.6	18	75	12	66	56	2	1	39	1.23
56578684--56578842	42	3.8	42	92	0	273	28	11	15	44	1.81
56581818--56581864	24	2.0	24	82	0	58	36	0	4	59	1.17
56587403--56587448	23	2.0	23	83	4	58	28	17	15	39	1.90
56589244--56589311	19	3.6	18	78	9	82	32	4	4	58	1.37
56589252--56589315	19	3.4	19	78	8	85	32	4	3	59	1.34
56589342--56589475	71	1.9	71	82	3	171	38	2	11	47	1.54
56591250--56591282	16	2.1	16	94	0	57	45	27	3	24	1.68
56596397--56596447	21	2.3	23	83	12	72	45	5	0	49	1.26
56599690--56599761	28	2.5	29	74	19	71	33	6	5	54	1.51
56606953--56607320	104	3.5	104	94	3	625	18	20	30	30	1.96
56615240--56615521	46	6.5	44	73	12	210	31	20	20	27	1.97
56617131--56617202	28	2.5	29	74	19	71	33	6	5	54	1.51
56620265--56621029	191	4.0	191	97	0	1404	36	13	13	36	1.84
56620265--56621029	383	2.0	383	96	0	1406	36	13	13	36	1.84
56621296--56622232	151	6.2	153	86	6	1238	52	7	8	31	1.60
56621287--56622232	455	2.1	450	87	5	1352	51	7	8	32	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56621296--56622232	304	3.1	297	88	5	1312	52	7	8	31	1.60
56623152--56623191	16	2.5	17	80	19	50	35	5	0	60	1.19
56623591--56623618	8	3.5	8	100	0	56	21	0	10	67	1.20
56631211--56631248	17	2.2	17	100	0	76	47	15	5	31	1.68
56631913--56632194	94	3.0	94	84	3	359	47	8	14	28	1.74
56634769--56634813	24	1.9	23	86	13	65	37	0	2	60	1.09
56634998--56635039	16	2.6	16	92	0	66	42	7	2	47	1.43
56635013--56635068	23	2.5	23	82	2	69	44	1	1	51	1.22
56636929--56636986	29	2.0	30	89	3	91	56	8	0	34	1.30
56636944--56637008	31	2.2	29	86	5	85	53	7	3	35	1.45
56640636--56640671	11	3.3	11	88	0	54	47	13	0	38	1.44
56642667--56642753	6	14.3	6	73	15	54	31	4	21	42	1.73
56645832--56645867	6	5.8	6	96	3	63	2	47	0	50	1.15
56646199--56646258	19	3.0	21	73	9	61	60	0	3	36	1.14
56646467--56646539	19	3.6	21	74	10	62	38	8	0	53	1.31
56646498--56646541	10	4.7	9	81	18	54	43	4	0	52	1.22
56646498--56646541	19	2.3	19	92	0	70	43	4	0	52	1.22
56651133--56651160	14	2.0	14	100	0	56	7	14	50	28	1.69
56656629--56656710	20	4.3	20	69	20	59	60	2	4	31	1.30
56661462--56661493	13	2.6	13	90	9	50	43	25	15	15	1.86
56663254--56663445	69	2.8	69	79	1	197	40	12	15	32	1.84
56667932--56667974	22	2.0	22	86	9	61	53	9	13	23	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56667940--56667989	22	2.3	22	79	6	57	58	6	18	18	1.59
56668371--56668446	36	2.1	36	87	5	107	27	17	15	39	1.90
56668676--56668709	16	2.1	16	88	5	50	76	5	0	17	0.98
56671169--56671201	15	2.1	16	88	5	50	18	15	21	45	1.85
56673217--56673331	41	2.8	41	85	5	126	32	22	17	27	1.96
56674931--56674979	25	2.0	25	88	8	73	51	2	0	46	1.12
56679426--56679475	17	2.7	20	78	18	70	10	0	44	46	1.37
56684064--56684113	17	2.7	20	78	18	70	10	0	44	46	1.37
56685690--56685741	24	2.2	24	89	0	77	55	9	1	32	1.43
56687659--56687710	24	2.2	24	89	0	77	55	9	1	32	1.43
56689765--56689830	16	4.0	16	78	7	51	31	1	21	45	1.61
56689756--56689966	34	6.5	34	80	13	228	31	1	22	44	1.62
56689744--56689966	25	8.8	27	83	6	222	31	1	22	44	1.61
56689743--56689932	59	3.2	59	87	3	249	32	1	21	44	1.62
56690718--56690762	12	4.0	12	86	13	69	71	0	0	28	0.87
56690721--56690763	22	2.0	21	95	4	77	74	0	0	25	0.82
56690953--56690995	18	2.4	17	81	14	50	55	11	20	11	1.66
56691026--56691079	18	2.9	19	81	15	76	57	18	16	7	1.62
56691023--56691084	18	3.3	17	80	15	61	54	16	19	9	1.68
56692862--56692936	18	4.2	18	92	0	132	28	22	16	33	1.95
56697332--56697409	28	2.7	29	74	9	70	53	1	2	42	1.22
56697343--56697410	31	2.3	28	78	9	73	54	1	2	41	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56697558--56697592	16	2.2	16	89	0	52	74	8	14	2	1.17
56697616--56697641	11	2.4	11	100	0	52	50	7	42	0	1.31
56698698--56698793	39	2.5	39	80	6	108	20	23	28	27	1.99
56705075--56705314	9	29.3	9	74	18	213	28	0	22	47	1.57
56705075--56705314	25	9.8	26	81	10	203	28	0	22	47	1.57
56705075--56705314	34	7.3	36	79	15	213	28	0	22	47	1.57
56705075--56705302	16	14.4	16	74	18	160	28	0	22	47	1.57
56706223--56706264	21	2.0	21	85	4	57	66	9	19	4	1.38
56706252--56706295	20	2.2	20	96	4	81	61	18	11	9	1.55
56710442--56710649	69	3.0	68	82	1	238	41	13	14	29	1.85
56710457--56710695	69	3.5	68	78	6	232	41	12	15	29	1.85
56710438--56710695	138	1.9	138	85	4	360	42	13	15	29	1.85
56719899--56719923	12	2.1	12	100	0	50	24	32	0	44	1.54
56720210--56720257	9	4.8	10	78	17	55	66	2	2	29	1.14
56720210--56720260	20	2.5	22	76	20	58	66	1	1	29	1.13
56725678--56725712	12	2.9	12	88	12	54	48	0	0	51	1.00
56725758--56725856	44	2.3	44	78	1	119	41	9	2	47	1.47
56726620--56726647	2	14.0	2	100	0	56	0	50	0	50	1.00
56735662--56735696	18	1.9	18	88	0	52	40	5	0	54	1.24
56741178--56741373	108	1.8	108	91	2	322	51	9	7	32	1.62
56747271--56747299	12	2.3	13	94	5	51	6	20	6	65	1.40
56749835--56749864	7	4.4	7	91	8	53	86	0	0	13	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56749835--56749864	13	2.2	14	94	5	53	86	0	0	13	0.57
56750509--56750572	23	2.8	22	79	6	65	43	6	4	45	1.50
56752845--56752889	22	2.1	22	91	4	74	53	0	4	42	1.21
56761077--56761101	6	4.2	6	100	0	50	16	0	0	84	0.63
56762896--56762929	16	2.1	17	88	5	52	47	0	20	32	1.51
56763206--56763327	24	5.0	25	74	9	74	25	20	19	34	1.96
56763250--56763307	25	2.3	24	77	13	64	29	15	20	34	1.94
56766171--56766211	6	6.7	6	85	2	55	41	17	21	19	1.90
56766192--56766434	45	5.6	45	80	10	272	40	20	18	20	1.91
56766192--56766434	127	1.9	129	86	5	346	40	20	18	20	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204