genome.fa.s26.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  36  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10111330--10111440	50	2.2	50	95	1	195	44	3	41	10	1.57
10112322--10112396	34	2.2	34	80	4	89	33	21	17	28	1.96
10112856--10113217	27	13.4	27	85	1	404	20	14	19	44	1.86
10128617--10128673	19	2.7	22	76	15	66	40	17	7	35	1.77
10128607--10128664	22	2.6	22	81	7	64	41	17	5	36	1.72
10129232--10129481	44	5.7	44	76	8	168	27	22	19	30	1.98
10129496--10129677	100	1.8	100	84	2	249	26	20	22	30	1.98
10129716--10129857	45	3.2	45	83	2	196	27	20	21	30	1.98
10129857--10130356	88	5.7	87	90	1	721	20	23	27	29	1.99
10137022--10137070	21	2.5	20	93	6	82	36	14	10	38	1.80
10137022--10137077	19	2.9	21	89	10	84	37	14	8	39	1.77
10136999--10137077	21	3.8	19	79	12	77	39	13	7	39	1.74
10147395--10147491	48	2.0	48	100	0	194	35	12	10	42	1.77
10147601--10147673	24	3.1	23	69	21	69	27	12	27	32	1.92
10147585--10147680	48	2.0	48	95	0	174	30	11	26	32	1.91
10152087--10152131	21	2.2	21	96	4	83	40	24	0	35	1.56
10152103--10152194	37	2.5	36	85	7	96	40	20	1	38	1.60
10165534--10165583	24	2.1	24	84	0	64	38	6	6	50	1.52
10169481--10169664	39	4.6	41	82	11	206	24	22	27	25	2.00
10169481--10169664	79	2.3	80	83	8	225	24	22	27	25	2.00
10169534--10169697	78	2.1	79	83	7	201	26	21	27	25	1.99
10177356--10177540	79	2.3	81	83	7	227	24	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10177357--10177540	40	4.6	40	82	9	207	25	22	27	24	2.00
10177409--10177573	79	2.1	79	83	6	201	26	21	27	24	1.99
10183232--10183388	81	1.9	81	98	0	305	44	24	8	21	1.81
10184927--10184963	16	2.3	16	95	0	65	29	5	37	27	1.79
10191908--10192326	187	2.3	180	88	5	605	24	25	7	42	1.81
10195329--10196402	315	3.4	315	90	2	1608	36	18	17	27	1.93
10207944--10208015	36	2.0	36	100	0	144	44	19	5	30	1.73
10209476--10209522	24	1.9	24	86	4	67	34	2	36	27	1.69
10210177--10210610	27	16.1	27	84	2	469	42	20	17	19	1.90
10210179--10210609	108	4.0	109	83	4	534	42	20	17	19	1.90
10211026--10211148	28	4.4	28	82	5	151	21	24	23	30	1.99
10216714--10216890	94	1.9	95	91	1	293	45	4	13	36	1.64
10216856--10216924	35	2.0	35	94	0	120	47	0	5	46	1.26
10216860--10216938	35	2.2	35	84	6	95	50	0	7	41	1.31
10216885--10217010	52	2.5	50	85	10	159	47	1	6	44	1.38
10218041--10218105	16	4.1	16	89	0	103	38	4	33	23	1.75
10218318--10218773	120	3.8	120	97	0	831	50	5	0	43	1.30
10224587--10224619	15	2.1	16	88	5	50	30	6	12	51	1.63
10228269--10228334	34	2.0	33	91	8	107	42	0	12	45	1.41
10228304--10228418	46	2.4	49	83	9	141	51	1	7	39	1.41
10231126--10231176	26	1.9	27	88	4	77	27	21	21	29	1.99
10231226--10231256	16	1.9	16	93	0	53	32	25	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10239953--10240010	29	2.0	29	100	0	116	27	34	10	27	1.89
10245665--10245716	21	2.5	21	79	17	56	17	28	26	26	1.97
10259507--10259704	50	3.8	51	86	5	247	22	30	21	25	1.99
10270308--10270895	40	14.7	40	94	0	1005	22	26	20	30	1.98
10278038--10278625	40	14.7	40	94	0	1005	22	26	20	30	1.98
10488135--10488332	50	3.8	51	86	5	247	22	30	21	25	1.99
10500818--10500849	16	1.9	17	93	6	57	56	3	40	0	1.15
10503020--10503070	17	3.1	16	80	8	66	43	1	1	52	1.23
10503021--10503093	11	6.8	11	70	22	57	41	1	2	54	1.23
10510145--10510257	54	2.1	55	85	5	149	17	23	27	30	1.97
10512758--10512792	6	5.8	6	86	0	52	14	5	0	80	0.89
10516157--10516195	16	2.4	17	82	8	53	35	12	33	17	1.88
10524072--10524109	18	2.1	19	90	5	60	23	23	13	39	1.90
10527334--10527368	18	2.0	18	88	5	54	14	45	28	11	1.79
10529286--10529333	23	2.0	24	92	4	80	37	10	18	33	1.85
10529419--10529444	9	2.9	9	100	0	52	53	0	11	34	1.37
10530167--10530209	24	1.9	22	86	13	61	41	6	9	41	1.64
10530547--10530771	85	2.7	84	88	2	310	31	17	16	34	1.93
10530553--10530803	85	3.0	85	85	3	276	31	18	16	33	1.93
10531360--10531482	28	4.4	27	73	12	113	51	4	18	25	1.66
10531363--10531471	28	3.9	28	80	2	137	52	4	19	23	1.64
10531319--10531482	56	2.9	56	77	7	170	53	6	17	23	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10535760--10535833	38	1.9	38	88	0	112	32	20	14	32	1.93
10539989--10540103	59	1.9	59	91	0	185	29	13	22	33	1.93
10540425--10540464	17	2.4	17	91	0	62	32	25	15	27	1.95
10542797--10542824	14	2.0	14	100	0	56	57	7	14	21	1.61
10552387--10552562	50	3.4	50	81	4	181	25	28	19	26	1.98
10558332--10558374	21	2.0	23	81	9	54	32	13	9	44	1.76
10560335--10560379	21	2.1	22	84	12	58	13	11	6	68	1.37
10560411--10560453	21	2.0	23	81	9	54	32	13	9	44	1.76
10562852--10562894	21	2.0	23	81	9	54	44	9	13	32	1.76
10569078--10569132	27	2.0	27	92	0	92	27	21	16	34	1.95
10585021--10585055	17	2.1	17	94	0	61	37	20	11	31	1.88
10587826--10588110	49	5.7	49	79	4	275	26	15	27	30	1.96
10587822--10588112	152	1.9	152	82	3	365	26	15	27	30	1.96
10587814--10588149	149	2.2	151	80	4	374	27	14	26	31	1.95
10595050--10595079	16	1.9	16	93	6	53	30	0	20	50	1.49
10596855--10597018	86	1.9	86	84	2	222	32	17	14	35	1.90
10610514--10610563	24	2.1	24	84	0	64	38	6	6	50	1.52
10614459--10614643	79	2.3	81	83	7	227	24	22	27	24	2.00
10614460--10614643	40	4.6	40	82	9	207	25	22	27	24	2.00
10614512--10614666	79	2.0	79	83	7	199	26	21	27	25	1.99
10645325--10645829	139	3.6	137	85	4	645	46	4	7	41	1.52
10645810--10645955	76	1.9	75	94	2	258	30	15	8	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10647207--10647241	15	2.2	15	90	10	52	71	2	5	20	1.19
10647422--10647631	105	2.0	105	100	0	420	40	15	14	30	1.87
10660554--10660746	50	3.7	50	79	4	188	25	21	27	24	1.99
10660560--10660746	100	1.8	104	80	6	229	26	20	28	24	1.99
10660666--10660785	50	2.4	49	82	6	145	30	20	25	22	1.98
10660995--10661033	4	9.8	4	82	0	51	51	2	23	23	1.61
10660996--10661034	20	2.0	20	94	0	69	53	2	23	20	1.57
10662593--10662784	50	3.7	50	77	6	163	28	22	24	24	1.99
10662984--10663022	4	9.8	4	82	0	51	51	2	23	23	1.61
10666120--10666158	12	3.2	12	85	0	51	51	5	23	20	1.67
10665443--10667196	596	2.9	596	96	0	3229	34	10	20	34	1.88
10666716--10666754	12	3.2	12	85	0	51	51	5	23	20	1.67
10670417--10670519	51	2.0	51	88	0	152	46	11	20	21	1.82
10688665--10688711	21	2.2	21	85	7	60	10	21	31	36	1.88
10689642--10689667	7	3.7	7	100	0	52	57	15	0	26	1.38
10689836--10689873	20	1.9	20	84	10	51	55	7	2	34	1.43
10690805--10690905	51	2.0	52	84	5	134	45	0	26	26	1.60
10690864--10690907	11	3.9	11	83	16	63	43	0	29	27	1.55
10690864--10690906	12	3.8	12	87	9	63	41	0	30	27	1.56
10692198--10692302	10	10.6	10	69	10	65	64	0	4	29	1.20
10692174--10692234	22	2.8	20	77	20	52	63	0	1	34	1.04
10692155--10692302	9	15.4	9	69	17	59	64	0	4	30	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10692190--10692244	23	2.5	22	88	8	76	65	0	3	30	1.10
10692549--10692663	19	5.9	19	71	9	70	32	3	2	61	1.26
10696311--10696378	21	3.3	20	69	22	61	33	7	19	39	1.79
10696275--10696378	40	2.6	40	84	4	131	33	6	20	39	1.79
10696578--10696843	39	6.4	39	74	11	163	20	17	18	42	1.89
10696584--10696836	45	5.9	44	78	10	231	20	17	19	41	1.90
10696578--10696845	84	3.2	82	78	11	269	20	17	19	42	1.89
10701477--10701506	13	2.3	13	94	0	51	40	23	0	36	1.55
10708430--10708498	35	1.9	36	97	2	131	26	2	18	52	1.60
10709695--10709747	18	2.9	18	77	8	54	60	0	1	37	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204