genome.fa.s26.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  180  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53395784--53395840	25	2.2	27	84	6	73	56	1	0	42	1.10
53400852--53400911	27	2.2	27	96	0	111	36	11	16	35	1.85
53403562--53403635	34	2.1	35	85	9	98	36	20	10	32	1.87
53403802--53404039	41	5.8	41	86	4	309	23	26	20	28	1.99
53404294--53404340	23	2.0	23	100	0	94	44	17	0	38	1.48
53404768--53405114	74	4.5	74	86	8	480	44	13	3	38	1.60
53404667--53405121	78	5.9	78	84	7	563	43	15	3	37	1.63
53425251--53425287	17	2.3	17	86	9	51	56	5	0	37	1.22
53427245--53427286	19	2.2	19	83	8	50	30	0	2	66	1.04
53427236--53427284	24	2.0	25	84	11	66	32	0	2	65	1.04
53431452--53431627	27	5.4	32	71	23	120	32	28	19	18	1.96
53431402--53431632	102	2.3	102	93	0	390	30	28	20	20	1.98
53433253--53433366	57	2.0	57	98	0	219	30	15	21	32	1.94
53442556--53442596	20	2.1	19	86	13	57	24	4	2	68	1.22
53443305--53443366	20	3.5	17	81	18	65	45	0	30	24	1.54
53443305--53443353	20	2.7	19	85	14	68	42	0	28	28	1.56
53443446--53443505	30	2.0	31	86	3	86	40	0	40	20	1.52
53445782--53445874	46	2.0	46	95	0	168	34	6	15	44	1.72
53446941--53446969	5	5.8	5	100	0	58	37	20	20	20	1.94
53453106--53453131	2	13.0	2	100	0	52	50	0	0	50	1.00
53453913--53453986	27	2.7	27	87	4	105	24	29	27	18	1.98
53454226--53454254	3	9.7	3	100	0	58	0	0	31	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53460437--53460523	26	3.4	25	70	23	83	55	11	5	27	1.58
53460595--53460838	10	26.3	9	68	27	74	0	30	0	69	0.89
53460627--53460839	14	16.8	13	66	25	86	0	30	0	69	0.89
53460629--53460838	4	53.0	4	72	22	92	0	30	0	69	0.89
53460591--53460837	75	3.3	75	93	4	401	0	30	0	69	0.89
53460670--53460803	42	3.4	42	79	17	187	0	28	0	71	0.86
53461000--53461062	26	2.6	24	85	9	92	47	0	12	39	1.42
53467117--53467189	34	2.1	34	100	0	146	34	10	9	45	1.72
53471469--53471546	28	2.8	28	96	0	138	43	8	24	23	1.82
53471532--53471809	138	2.0	138	98	0	538	29	18	11	39	1.87
53479857--53479901	21	2.0	21	83	8	54	44	15	2	37	1.59
53479950--53480045	48	2.0	48	97	0	183	28	20	13	37	1.91
53481344--53481420	19	3.8	19	67	21	50	55	1	3	38	1.26
53482144--53482234	44	2.0	45	83	12	116	43	4	20	30	1.71
53486435--53486483	24	2.0	24	88	0	71	36	6	26	30	1.81
53489408--53489451	22	2.0	22	100	0	88	31	13	9	45	1.75
53493094--53493119	6	4.3	6	100	0	52	15	0	34	50	1.45
53493853--53494436	299	1.9	301	87	2	861	32	14	19	34	1.92
53494806--53494854	25	2.0	25	91	0	80	20	16	0	63	1.31
53499136--53499371	50	4.7	50	82	0	283	18	30	24	27	1.98
53499709--53499766	30	1.9	30	86	6	82	32	22	5	39	1.76
53502473--53502564	3	30.7	3	72	12	73	60	2	5	31	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53503355--53503385	16	1.9	16	93	0	53	67	3	0	29	1.06
53503363--53503387	13	1.9	13	100	0	50	68	0	0	32	0.90
53503463--53503543	36	2.2	36	95	0	144	11	20	41	25	1.86
53505790--53505839	22	2.3	22	85	0	64	70	0	2	28	0.99
53505846--53505871	12	2.2	12	100	0	52	53	0	0	46	1.00
53509801--53509837	6	6.0	6	90	6	56	67	18	13	0	1.23
53517012--53517060	24	2.0	24	100	0	98	34	16	8	40	1.78
53524296--53524325	12	2.6	11	90	10	51	70	0	3	26	1.03
53524626--53524721	31	3.1	31	93	3	165	44	13	10	31	1.77
53527846--53527896	14	3.4	14	75	15	57	0	13	11	74	1.07
53527847--53527896	15	3.3	15	78	13	57	0	12	12	76	1.04
53527918--53528010	9	10.4	9	69	21	54	1	10	11	76	1.08
53527917--53528010	10	9.4	10	68	15	52	1	10	11	76	1.07
53527850--53527995	58	2.7	56	88	9	205	1	13	10	73	1.15
53527905--53527977	34	2.1	34	82	5	85	1	13	10	73	1.15
53527850--53528011	56	2.9	56	75	17	160	1	13	11	72	1.19
53528230--53528260	4	8.0	4	92	7	55	74	0	0	25	0.82
53528559--53528654	31	3.1	31	93	3	165	44	13	10	31	1.77
53537215--53537259	11	4.4	11	75	16	51	35	2	0	62	1.08
53540912--53540948	18	2.1	18	90	5	58	27	0	0	72	0.84
53541195--53541342	30	5.0	29	78	5	136	37	22	2	37	1.66
53542235--53542284	17	2.8	17	77	17	57	78	0	20	2	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53542243--53542284	8	4.8	9	80	14	52	76	0	21	2	0.90
53542775--53542831	30	1.9	29	89	3	87	47	10	7	35	1.65
53542818--53542872	24	2.3	24	87	3	85	43	7	7	41	1.60
53542864--53542918	27	2.1	26	82	3	65	27	12	7	52	1.65
53542854--53542896	18	2.5	17	88	7	68	25	11	11	51	1.72
53542906--53542986	18	4.6	17	71	18	60	37	8	11	43	1.71
53542863--53542947	43	2.0	43	83	4	109	27	11	11	49	1.74
53542932--53542978	15	2.9	16	75	15	51	34	8	10	46	1.69
53547504--53547648	30	4.8	30	77	0	128	10	24	30	35	1.89
53548702--53548789	30	2.9	30	81	0	104	15	29	23	30	1.96
53550093--53550287	98	2.0	98	96	0	363	36	24	10	28	1.88
53551136--53551181	3	15.0	3	79	20	51	63	2	2	32	1.19
53551748--53551879	19	6.8	19	91	3	219	36	15	10	37	1.82
53551741--53551878	59	2.4	59	91	4	221	36	14	10	38	1.80
53552066--53552565	89	5.8	88	73	14	315	27	23	20	28	1.99
53552198--53552521	173	1.9	173	82	8	410	27	23	20	28	1.99
53552103--53552653	44	12.8	43	73	13	366	27	23	20	28	1.99
53552045--53552650	217	2.8	217	94	0	1068	27	23	20	28	1.99
53552640--53553026	132	2.9	132	94	0	675	24	26	21	28	1.99
53552732--53552927	44	4.5	44	65	12	114	26	26	19	28	1.99
53554297--53554332	8	4.8	8	86	13	58	0	0	11	88	0.50
53554298--53554330	14	2.4	14	100	0	66	0	0	12	87	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53560376--53560488	19	5.8	19	85	8	165	37	14	9	38	1.79
53560350--53560487	38	3.5	38	85	9	161	39	13	8	38	1.75
53560350--53560487	59	2.3	61	86	7	185	39	13	8	38	1.75
53561168--53561216	22	2.2	22	82	17	57	6	20	4	69	1.27
53561858--53562001	30	4.8	30	77	5	132	11	25	29	32	1.92
53561952--53562027	30	2.5	30	75	8	75	11	23	28	35	1.90
53562698--53562973	105	2.6	104	81	10	285	26	19	17	35	1.94
53564788--53564918	30	4.4	30	78	3	111	12	28	27	32	1.92
53565541--53565567	9	3.0	9	100	0	54	11	33	11	44	1.75
53565622--53566097	104	4.5	101	78	10	421	27	20	17	34	1.95
53565619--53566097	205	2.3	206	81	9	524	27	20	17	34	1.95
53566481--53566594	52	2.2	53	93	1	194	18	20	21	40	1.92
53566503--53566613	52	2.2	52	83	8	147	24	18	19	37	1.93
53566587--53566867	108	2.6	104	76	8	269	33	18	19	28	1.95
53568215--53568324	30	3.7	30	81	0	130	14	25	28	31	1.95
53568208--53568348	60	2.3	60	84	2	176	12	26	27	34	1.92
53570710--53570857	37	4.0	37	94	0	251	27	20	13	38	1.90
53578029--53578176	37	4.0	37	94	0	251	27	20	13	38	1.90
53587529--53587580	21	2.5	21	87	0	77	30	30	9	28	1.89
53587635--53587932	154	1.9	154	93	0	506	29	21	27	21	1.99
53596136--53596225	44	2.0	44	95	0	162	37	14	24	23	1.92
53601177--53601543	46	7.6	46	83	10	309	34	14	22	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53601190--53601543	52	7.2	50	84	9	428	34	14	22	29	1.93
53601177--53601543	98	3.8	97	84	9	494	34	14	22	29	1.93
53607345--53607409	32	2.1	32	97	2	123	47	12	9	30	1.72
53611760--53611790	14	2.2	14	94	0	53	29	29	6	35	1.82
53638221--53638259	18	2.1	19	90	4	62	17	7	12	61	1.54
53639326--53639376	9	5.7	9	88	6	77	43	21	9	25	1.83
53641965--53641990	3	8.7	3	100	0	52	65	0	0	34	0.93
53642970--53642998	3	9.7	3	100	0	58	68	0	0	31	0.89
53644031--53644284	95	2.7	93	81	6	239	30	18	15	35	1.92
53644073--53644284	96	2.2	95	83	4	273	30	17	16	35	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204