genome.fa.s26.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  150  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45528822--45528867	23	2.0	23	100	0	92	34	21	8	34	1.84
45529675--45529720	16	2.6	17	80	19	51	45	0	32	21	1.52
45529801--45529860	30	2.0	31	83	9	79	43	0	35	21	1.53
45530074--45530119	9	5.1	9	89	0	74	32	10	13	43	1.78
45530173--45530203	9	3.4	9	90	0	53	38	22	12	25	1.90
45540126--45540154	3	9.7	3	100	0	58	65	0	0	34	0.93
45548989--45549064	26	2.9	26	80	3	82	21	25	25	28	1.99
45549015--45549064	13	3.8	13	81	0	55	22	28	26	24	1.99
45549018--45549078	26	2.3	26	82	0	77	24	27	27	19	1.99
45552176--45552251	37	2.1	37	100	0	152	31	19	13	35	1.90
45557979--45558007	15	1.9	15	100	0	58	27	27	13	31	1.94
45559523--45559555	16	2.0	17	88	5	50	42	0	24	33	1.55
45559822--45559909	25	3.6	25	93	1	133	23	27	15	32	1.95
45559831--45559928	25	3.9	25	90	2	117	21	26	19	32	1.97
45559831--45559928	50	2.0	50	85	4	135	21	26	19	32	1.97
45565159--45565195	14	2.6	14	91	0	56	24	5	5	64	1.36
45565992--45566026	13	2.8	13	86	4	54	37	5	0	57	1.23
45566135--45566164	15	1.9	16	93	6	53	40	6	0	53	1.27
45570464--45570494	16	1.9	16	93	0	53	38	19	0	41	1.51
45571262--45571313	10	4.7	12	79	13	58	0	26	0	73	0.84
45571273--45571315	10	4.1	10	82	11	59	0	20	0	79	0.74
45571262--45571313	22	2.4	22	90	0	86	0	26	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45573740--45573787	21	2.3	21	82	7	62	54	2	25	18	1.55
45575984--45576334	130	2.7	130	84	4	449	38	11	16	33	1.85
45578816--45578871	29	1.9	29	85	0	76	16	30	16	37	1.90
45584410--45584452	22	1.9	23	90	4	70	67	0	4	27	1.10
45595093--45595142	19	2.4	21	83	9	59	72	0	2	26	0.96
45595197--45595248	27	1.9	27	88	0	77	13	25	30	30	1.94
45602794--45602842	19	2.4	21	83	10	57	20	2	4	73	1.10
45615880--45615940	23	2.7	23	84	0	86	31	26	19	22	1.98
45617153--45617184	13	2.3	15	89	10	50	56	18	0	25	1.42
45619549--45619600	26	2.0	26	96	0	95	34	9	26	28	1.88
45629636--45629783	78	1.9	78	81	2	181	43	12	12	31	1.80
45635505--45635575	35	2.0	35	100	0	142	29	22	8	39	1.83
45643581--45643605	5	5.0	5	100	0	50	60	0	40	0	0.97
45644843--45644989	57	2.5	56	85	10	188	29	21	25	23	1.99
45646633--45646697	9	6.8	9	74	11	58	1	20	1	76	0.94
45646623--45646692	5	14.0	5	77	14	65	1	22	0	75	0.88
45648159--45648195	2	18.5	2	94	0	65	48	48	2	0	1.15
45649390--45649446	23	2.5	23	91	0	96	63	15	0	21	1.31
45650706--45650744	19	2.1	19	85	9	53	48	5	7	38	1.54
45652630--45652678	16	3.1	16	80	8	64	4	24	0	71	1.03
45653889--45654168	46	6.6	43	77	17	268	28	22	14	34	1.93
45653978--45654132	36	4.0	36	78	15	166	29	20	14	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45653932--45654168	82	2.9	82	93	0	393	29	21	13	35	1.92
45657378--45657422	22	2.0	22	83	8	56	40	4	0	55	1.20
45666536--45666578	10	4.1	10	85	8	59	74	4	20	0	1.00
45670843--45670886	23	1.9	23	86	9	63	36	13	9	40	1.76
45671740--45671775	17	2.1	18	89	5	56	58	16	2	22	1.51
45673395--45673462	34	2.0	35	88	2	102	33	7	14	44	1.73
45673429--45673466	15	2.6	15	83	4	51	31	7	15	44	1.75
45675937--45675970	17	2.0	17	94	0	59	47	2	11	38	1.55
45676576--45676619	19	2.3	19	88	7	63	68	2	0	29	1.02
45677888--45677918	13	2.4	13	100	0	62	38	25	12	22	1.90
45677952--45678038	21	4.1	21	79	7	104	36	22	21	18	1.95
45677952--45678038	44	2.0	41	84	6	111	36	22	21	18	1.95
45678343--45678374	16	1.9	17	93	6	57	25	21	0	53	1.46
45679080--45679113	3	11.7	3	93	6	61	64	0	0	35	0.94
45679246--45679310	30	2.3	27	84	7	76	44	3	0	52	1.16
45679276--45679312	16	2.3	17	81	13	51	48	0	0	51	1.00
45679769--45679898	67	1.9	67	93	0	224	39	6	20	34	1.77
45687504--45687786	43	6.5	43	80	5	284	30	18	14	36	1.91
45697637--45697690	28	1.9	28	84	0	72	50	18	14	16	1.79
45698432--45698510	23	3.4	23	92	0	131	15	13	26	44	1.84
45698476--45698545	35	2.0	35	91	0	113	14	14	24	47	1.81
45698453--45698568	58	2.0	58	87	0	169	13	12	25	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45698511--45698568	23	2.5	23	91	0	89	13	10	25	50	1.74
45698511--45698575	23	2.8	23	83	4	69	15	10	24	49	1.76
45702172--45702213	17	2.5	17	84	3	50	61	0	4	33	1.17
45714054--45714120	34	1.9	35	84	3	91	44	11	10	32	1.75
45714089--45714128	14	2.9	14	84	0	53	42	15	7	35	1.75
45722539--45722596	30	1.9	30	89	0	89	41	3	24	31	1.71
45722808--45722839	13	2.5	13	94	0	55	31	0	12	56	1.37
45722934--45723175	50	4.7	50	86	4	297	26	24	29	19	1.99
45722934--45723183	100	2.4	103	88	6	364	26	24	29	20	1.99
45829208--45830086	1	879.0	1	74	0	678	86	3	3	6	0.78
45829207--45830086	19	46.7	18	77	13	748	86	3	3	6	0.79
45831560--45831668	50	2.1	52	79	11	118	41	3	30	24	1.72
45844823--45845154	43	7.7	43	86	0	432	24	32	18	24	1.97
45850647--45850695	21	2.3	21	85	0	62	30	40	0	28	1.57
45850689--45850813	60	2.0	62	81	6	148	43	24	3	29	1.70
45851298--45851336	20	2.0	20	84	0	51	64	5	7	23	1.40
45851355--45851455	41	2.5	41	96	0	184	30	32	19	16	1.95
45859968--45860030	25	2.6	24	75	5	63	19	26	19	34	1.95
45860120--45860196	25	2.9	27	75	11	79	19	24	20	35	1.96
45860137--45860219	27	3.2	26	77	11	82	15	27	21	34	1.94
45860207--45860270	25	2.6	24	87	7	101	17	26	21	34	1.95
45860708--45860736	12	2.4	12	100	0	58	13	20	31	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45863030--45863083	25	2.1	25	86	6	72	38	11	1	48	1.50
45863624--45863657	14	2.5	14	95	4	61	14	0	35	50	1.44
45876216--45876607	50	7.7	50	79	6	358	29	22	22	25	1.99
45876203--45876605	100	4.0	100	84	5	468	29	22	22	25	1.99
45879514--45879539	13	2.0	13	100	0	52	38	0	7	53	1.30
45879553--45879605	27	2.0	27	85	7	72	47	5	16	30	1.70
45885587--45885639	28	2.0	26	88	7	79	60	1	13	24	1.43
45885821--45885889	16	4.2	16	96	3	129	24	0	37	37	1.56
45885821--45885889	33	2.1	32	97	2	129	24	0	37	37	1.56
45885870--45885960	45	2.0	45	85	2	121	27	6	28	37	1.82
45886105--45886159	15	3.4	16	80	16	53	54	1	0	43	1.10
45886111--45886159	16	2.9	18	80	20	61	55	0	0	44	0.99
45886341--45886392	15	3.6	15	80	12	56	53	1	0	44	1.11
45886476--45886516	16	2.5	17	85	14	52	53	0	2	43	1.13
45886108--45886517	120	3.4	120	94	2	702	50	5	1	42	1.36
45893501--45893566	30	2.2	30	86	5	89	54	6	19	19	1.65
45894551--45894649	30	3.3	30	75	2	110	28	27	15	29	1.96
45908767--45908818	23	2.3	23	79	0	59	34	7	30	26	1.85
45911552--45911587	17	2.2	17	95	5	65	58	5	0	36	1.22
45913922--45913979	23	2.5	23	83	5	73	62	1	1	34	1.16
45913936--45913980	23	2.0	23	95	0	81	60	0	2	37	1.09
45926798--45926836	5	7.8	5	100	0	78	58	20	0	20	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45929675--45929741	15	4.3	15	75	7	62	32	19	0	47	1.50
45930329--45930381	22	2.5	21	78	6	61	60	1	0	37	1.08
45930336--45930384	22	2.1	22	85	7	62	65	2	0	32	1.04
45934541--45934569	9	3.3	9	95	4	51	20	0	0	79	0.74
45943959--45944136	27	6.6	27	82	3	106	29	29	15	26	1.96
45943980--45944135	82	1.9	81	86	3	224	28	29	15	26	1.96
45951785--45951961	27	6.6	27	83	2	122	29	28	15	27	1.96
45951785--45951961	54	3.3	54	84	2	221	29	28	15	27	1.96
45951806--45951960	81	1.9	81	88	2	231	29	28	15	27	1.96
45963297--45963404	51	2.1	52	91	1	173	30	19	6	43	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204