genome.fa.s26.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  137  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41858358--41858400	21	2.0	21	81	0	50	51	16	0	32	1.45
41867841--41867924	34	2.5	33	80	5	96	32	8	20	39	1.82
41876759--41877101	76	4.5	76	78	1	294	25	22	20	32	1.98
41876759--41877038	152	1.8	150	81	5	348	24	22	19	33	1.97
41877932--41877979	23	2.0	23	84	11	62	75	10	8	6	1.20
41882644--41882685	13	3.2	13	86	6	57	23	0	0	76	0.79
41882645--41882684	7	5.7	7	90	0	62	22	0	0	77	0.77
41882678--41882706	11	2.6	11	100	0	58	48	0	0	51	1.00
41882692--41882747	27	2.0	28	86	3	78	32	0	1	66	1.03
41884542--41884598	10	5.7	9	76	19	51	82	12	1	3	0.87
41884546--41884597	16	3.2	17	81	13	65	82	11	1	3	0.88
41884542--41884613	25	2.8	25	79	8	74	81	9	5	2	0.94
41885572--41885598	13	2.1	13	100	0	54	70	0	14	14	1.17
41886945--41887202	44	5.6	44	72	16	184	31	18	21	28	1.97
41887116--41887213	44	2.2	44	85	0	115	31	20	23	24	1.98
41887243--41887814	50	11.4	50	74	4	391	33	23	19	22	1.97
41887351--41888031	200	3.5	198	79	9	742	32	23	20	24	1.98
41887351--41887832	100	4.8	100	88	3	632	32	23	20	23	1.98
41887881--41888031	50	3.0	50	67	3	133	33	21	18	26	1.96
41887668--41888012	180	1.9	180	85	2	469	30	22	20	26	1.98
41888549--41888602	24	2.2	24	80	0	63	77	9	9	3	1.09
41890066--41890095	16	1.9	16	93	6	53	33	0	13	53	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41893614--41893673	3	20.0	3	92	0	66	66	10	0	23	1.21
41893839--41893895	25	2.3	24	80	14	62	54	3	10	31	1.51
41894362--41894815	154	3.0	155	84	7	578	40	11	4	43	1.61
41895896--41895933	13	2.8	13	81	18	51	52	15	15	15	1.75
41909955--41910127	45	3.9	44	82	5	190	30	17	17	34	1.93
41909919--41910118	90	2.3	90	84	4	255	33	17	16	34	1.91
41911756--41911956	41	4.9	41	89	2	305	15	17	27	38	1.90
41911761--41912021	123	2.1	123	81	6	289	17	18	25	38	1.92
41912369--41912438	16	4.4	16	67	16	56	27	1	21	50	1.57
41912371--41912451	23	3.5	23	74	11	85	23	1	24	50	1.56
41912462--41912502	22	1.9	21	85	14	57	19	0	24	56	1.42
41916612--41916669	29	2.0	29	100	0	116	31	24	3	41	1.71
41916799--41916855	9	6.7	9	76	9	57	42	12	1	43	1.52
41916822--41916853	16	2.0	16	93	0	55	46	12	0	40	1.42
41916948--41917017	12	6.0	12	80	6	81	48	17	2	31	1.61
41916965--41917017	22	2.3	24	87	6	74	52	16	0	30	1.44
41917071--41917427	9	39.2	9	77	7	337	46	17	3	32	1.67
41917080--41917427	55	6.5	54	80	10	315	46	17	4	32	1.67
41917635--41917705	26	2.7	26	89	8	99	28	5	0	66	1.14
41917662--41917781	11	11.9	11	71	19	57	40	3	0	56	1.16
41917662--41917781	40	3.0	40	90	4	179	40	3	0	56	1.16
41917692--41917781	39	2.2	40	86	5	119	42	3	0	54	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41917730--41917781	10	4.9	11	86	13	74	46	1	0	51	1.12
41917787--41917821	5	6.8	5	87	6	52	2	40	57	0	1.14
41917968--41918268	9	33.0	9	78	5	300	47	17	3	31	1.64
41917968--41918254	37	8.1	37	82	9	287	47	17	3	31	1.63
41917969--41918268	137	2.3	130	87	7	419	47	17	3	32	1.64
41923635--41923770	66	2.1	66	88	0	200	41	18	26	13	1.88
41924119--41924291	43	4.1	42	86	3	217	27	17	26	28	1.98
41924119--41924291	84	2.0	84	84	7	226	27	17	26	28	1.98
41924543--41924610	28	2.4	28	77	0	73	22	20	32	25	1.98
41926380--41926420	19	2.1	20	90	4	66	58	7	2	31	1.38
41930820--41930847	14	2.0	14	100	0	56	42	7	14	35	1.73
41936266--41936322	28	2.0	28	100	0	114	35	10	3	50	1.54
41954350--41954392	17	2.5	17	84	3	59	76	2	4	16	1.05
41961002--41961093	44	2.0	45	89	8	141	57	13	16	13	1.65
41963482--41963555	29	2.6	29	88	0	112	21	21	29	27	1.99
41968525--41968567	5	8.6	5	100	0	86	41	37	0	20	1.53
41968525--41968584	15	4.5	13	87	10	61	41	35	0	23	1.55
41969030--41969078	25	1.9	26	83	4	64	38	18	10	32	1.84
41976981--41977018	19	2.0	19	85	10	51	60	2	7	28	1.38
41977095--41977149	20	2.8	20	80	0	65	52	1	7	38	1.40
41977781--41977809	14	2.0	15	93	6	51	55	31	0	13	1.39
41979855--41979912	30	1.9	30	85	0	80	39	24	17	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41985325--41985388	27	2.4	27	86	0	83	25	29	35	9	1.87
41985497--41985826	152	2.2	150	89	6	486	56	8	7	27	1.55
41985880--41985907	10	2.8	10	100	0	56	28	0	0	71	0.86
41985920--41986469	161	3.4	160	90	3	819	26	8	9	55	1.60
41986542--41986611	27	2.6	27	86	0	95	10	32	32	24	1.88
41990547--41990601	29	1.9	28	85	3	74	12	14	1	70	1.24
41994485--41994729	115	2.1	115	78	3	267	40	13	7	38	1.72
42005139--42005189	18	2.8	18	84	3	66	45	1	1	50	1.24
42020555--42020586	13	2.5	13	94	0	55	34	6	3	56	1.40
42025600--42025980	104	3.7	103	82	4	435	35	15	19	29	1.93
42025564--42025980	208	2.0	208	84	1	541	35	15	19	29	1.93
42025899--42026062	84	2.0	84	87	2	240	34	14	21	29	1.93
42044689--42044879	54	3.5	53	86	7	269	34	23	14	27	1.94
42044844--42045030	52	3.6	52	81	5	175	31	18	21	27	1.97
42047916--42048052	55	2.5	54	84	2	184	31	10	17	40	1.83
42047895--42048051	55	2.9	53	81	5	179	30	13	17	38	1.88
42049848--42049925	23	3.5	22	83	14	90	60	1	2	35	1.19
42049941--42049989	25	2.0	24	92	4	80	57	0	2	40	1.10
42050695--42050954	86	3.0	85	87	2	367	45	7	10	36	1.67
42055535--42055583	25	2.0	25	91	0	80	16	12	20	51	1.76
42058501--42058563	26	2.4	26	89	5	92	71	0	3	25	1.01
42058509--42058566	13	4.7	12	76	14	55	70	0	3	25	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42060136--42060205	22	3.3	21	82	7	88	14	32	27	25	1.94
42064583--42064639	24	2.4	24	84	0	69	21	21	22	35	1.96
42070284--42070441	42	3.7	43	77	5	140	29	25	18	26	1.98
42070336--42070441	44	2.5	42	80	6	106	32	25	16	25	1.97
42077155--42077212	22	2.8	22	74	12	68	32	29	13	24	1.94
42078865--42078910	23	2.1	22	84	8	58	32	10	2	54	1.47
42091199--42091597	44	8.8	44	68	18	171	29	20	22	27	1.98
42091476--42091597	45	2.8	44	77	15	126	29	21	22	26	1.99
42091318--42091607	147	2.0	147	91	0	472	30	20	22	26	1.98
42093752--42093810	25	2.5	23	80	5	73	62	16	6	13	1.51
42096816--42096890	27	2.8	27	80	8	73	34	13	22	29	1.92
42096845--42096900	27	2.1	27	86	0	76	42	14	16	26	1.86
42101709--42101802	43	2.2	42	83	5	109	26	15	2	55	1.52
42103969--42104005	9	4.1	9	92	0	65	45	13	10	29	1.77
42104205--42104259	23	2.6	20	78	15	65	27	27	0	45	1.54
42104211--42104254	23	1.9	23	95	0	79	27	27	0	45	1.54
42104556--42104584	9	3.2	9	100	0	58	31	0	0	68	0.89
42108872--42108914	23	1.9	23	90	4	70	37	4	18	39	1.72
42114117--42114145	14	2.0	15	93	6	51	27	0	3	68	1.05
42114874--42115080	49	4.2	49	86	4	242	30	15	19	34	1.93
42117054--42117096	23	1.9	23	90	4	70	37	4	18	39	1.72
42128108--42128158	23	2.2	23	89	0	75	27	7	21	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42129137--42129170	17	1.9	17	88	5	50	44	11	14	29	1.81
42131240--42131269	8	3.6	8	95	4	51	86	0	13	0	0.57
42131242--42131274	15	2.3	15	94	5	59	84	0	15	0	0.61
42131239--42131272	9	3.9	9	92	7	52	85	0	14	0	0.60
42133939--42134022	22	3.8	22	80	4	80	34	17	29	17	1.94
42133939--42134036	22	4.4	22	78	6	74	34	18	30	16	1.93
42133986--42134047	22	2.8	22	85	0	79	35	19	30	14	1.92
42134427--42134477	28	1.9	25	84	11	66	33	13	1	50	1.53
42137106--42137164	21	2.6	23	73	15	59	35	1	1	61	1.16
42137110--42137159	21	2.3	22	86	3	66	36	2	2	60	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204