genome.fa.s26.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  196  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57781836--57781870	16	2.3	15	90	5	52	0	14	5	80	0.89
57782505--57782539	9	3.9	9	88	0	52	34	14	0	51	1.42
57782698--57782768	25	3.0	23	67	21	56	36	8	0	54	1.31
57785464--57785514	18	2.8	18	75	19	52	39	11	1	47	1.52
57787611--57787653	21	2.0	21	100	0	86	44	4	18	32	1.71
57790322--57790360	21	1.9	20	94	5	69	58	0	0	41	0.98
57790310--57790372	29	2.1	31	85	11	87	53	3	0	42	1.16
57790867--57790923	27	2.2	26	81	6	69	64	3	3	28	1.26
57798332--57798360	15	1.9	15	100	0	58	34	17	6	41	1.76
57799398--57799451	21	2.6	21	77	16	58	38	16	5	38	1.72
57802522--57802552	15	2.1	15	93	0	53	61	0	0	38	0.96
57804146--57804253	44	2.5	44	82	10	132	29	17	22	30	1.97
57807082--57807403	46	7.0	46	93	1	531	36	9	25	29	1.87
57808039--57808063	11	2.3	11	100	0	50	8	8	0	84	0.79
57808671--57808768	3	33.0	3	75	6	74	34	4	4	57	1.37
57808826--57808866	18	2.3	18	83	4	57	41	9	0	48	1.36
57808904--57808967	10	6.3	10	74	16	51	32	1	0	65	1.02
57810977--57811019	19	2.3	19	100	0	86	51	13	4	30	1.62
57812277--57812566	150	1.9	154	85	7	410	27	30	16	25	1.97
57817630--57817665	16	2.2	16	90	9	56	19	11	2	66	1.35
57819431--57819464	2	17.0	2	93	0	59	52	0	0	47	1.00
57835186--57835226	21	2.0	21	90	0	64	29	21	29	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57840999--57841037	21	1.9	20	94	5	69	58	0	0	41	0.98
57840987--57841050	30	2.1	31	88	8	96	54	3	0	42	1.16
57842635--57842664	4	7.2	4	96	3	51	23	0	0	76	0.78
57842962--57843017	25	2.1	26	80	9	60	57	5	8	28	1.52
57844024--57844080	28	2.0	28	86	13	80	38	0	1	59	1.08
57843997--57844067	20	3.7	19	67	14	56	38	0	1	60	1.06
57845293--57845348	26	2.2	25	81	9	67	64	3	0	32	1.11
57845305--57845380	36	2.0	38	85	7	102	59	0	1	39	1.06
57845850--57845880	16	1.9	16	93	0	53	48	9	6	35	1.62
57846012--57846089	40	1.9	42	84	10	108	42	3	7	46	1.51
57846033--57846089	20	2.9	19	77	10	53	40	3	7	49	1.47
57847007--57847068	33	2.0	31	81	15	74	27	6	4	61	1.41
57849390--57849428	20	2.0	20	85	10	53	61	0	0	38	0.96
57852585--57852624	21	2.0	21	90	5	64	42	7	0	50	1.30
57856991--57857024	17	2.0	17	94	0	59	44	50	0	5	1.26
57861620--57861653	17	2.0	17	94	0	59	44	50	0	5	1.26
57864589--57864616	11	2.5	11	100	0	56	64	7	21	7	1.43
57868100--57868135	2	18.0	2	94	0	63	0	47	2	50	1.15
57878610--57878683	37	2.0	37	94	0	130	18	24	8	48	1.75
57878943--57879013	22	3.2	22	63	21	58	40	18	9	30	1.83
57878939--57879026	44	2.0	44	100	0	176	40	18	9	31	1.81
57883488--57883531	23	1.9	23	86	9	63	47	0	4	47	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57883789--57883830	20	2.1	20	86	0	57	38	2	7	52	1.42
57897479--57897663	72	2.5	73	95	3	338	41	23	6	28	1.79
57897663--57897703	3	13.3	3	94	5	73	65	0	0	34	0.93
57901915--57902100	73	2.5	73	99	0	363	40	24	6	27	1.80
57902101--57902129	3	9.7	3	100	0	58	68	0	0	31	0.89
57908831--57908907	32	2.4	32	80	0	91	24	24	6	44	1.77
57913338--57913414	32	2.4	32	80	0	91	24	24	6	44	1.77
57919813--57919853	21	2.0	21	90	0	64	29	21	29	19	1.98
57942567--57942674	42	2.6	42	77	11	105	28	25	19	26	1.99
57957618--57957660	23	1.9	23	86	13	63	65	0	2	32	1.06
57957970--57958009	6	6.7	6	88	0	62	32	0	17	50	1.47
57965667--57965694	3	9.3	3	100	0	56	32	0	35	32	1.58
57966464--57966508	18	2.6	18	83	13	58	33	2	0	64	1.06
57967804--57967851	19	2.6	19	78	15	64	70	4	0	25	1.04
57968497--57968557	27	2.3	26	83	11	70	55	3	1	39	1.26
57968893--57968941	23	2.2	22	82	7	55	20	8	2	69	1.24
57969191--57969231	20	2.0	21	85	9	57	53	2	2	41	1.27
57970538--57970574	18	2.1	18	94	0	65	29	10	13	45	1.77
57972320--57972481	50	3.4	50	78	14	187	30	24	11	33	1.91
57972377--57972488	43	2.6	44	95	1	199	32	25	13	29	1.93
57975329--57975621	50	5.8	50	86	0	397	25	22	31	20	1.98
57977653--57977816	81	2.0	81	100	0	328	30	12	18	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57988266--57988313	24	2.0	24	100	0	96	25	16	16	41	1.89
58004606--58004666	28	2.2	28	85	5	79	40	1	13	44	1.53
58005739--58005832	48	2.0	48	87	4	136	25	8	17	48	1.74
58009254--58009305	19	2.7	19	82	5	61	51	5	0	42	1.25
58021727--58021751	13	1.9	13	100	0	50	60	0	0	40	0.97
58032617--58032658	3	14.0	3	85	9	59	0	66	0	33	0.92
58034676--58034709	16	2.1	16	100	0	68	32	5	17	44	1.73
58042258--58042319	30	2.0	31	84	9	83	41	0	6	51	1.27
58050415--58050445	3	10.3	3	100	0	62	67	0	32	0	0.91
58071929--58071954	13	2.0	13	100	0	52	38	15	23	23	1.92
58072476--58072611	60	2.2	62	79	5	152	22	16	17	44	1.87
58073240--58073311	29	2.4	29	77	6	83	26	11	9	52	1.67
58081646--58081712	31	2.1	32	83	2	82	40	11	25	22	1.88
58098215--58098308	49	1.9	49	82	8	120	44	18	10	26	1.82
58098264--58098428	67	2.4	67	86	7	208	35	23	13	27	1.93
58106664--58106711	16	3.1	15	87	6	60	64	4	2	29	1.23
58106660--58106711	8	6.5	8	78	8	52	65	3	1	28	1.21
58106659--58106715	24	2.4	24	77	11	64	64	3	3	28	1.26
58106866--58106928	22	2.7	23	85	11	76	52	4	7	34	1.52
58106943--58107007	2	34.5	2	76	11	57	56	1	1	40	1.18
58106917--58107003	40	2.2	40	83	4	104	57	3	3	35	1.32
58107037--58107082	25	1.9	25	86	8	69	60	0	4	34	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58107566--58107710	30	4.8	30	85	5	170	21	4	46	27	1.69
58111263--58111293	14	2.2	14	94	0	53	38	0	12	48	1.42
58123607--58123649	22	1.9	23	86	13	63	65	11	6	16	1.46
58129547--58129622	38	2.0	38	94	0	134	56	5	28	9	1.52
58129927--58129999	38	1.9	38	91	0	119	54	5	30	9	1.55
58133975--58134026	24	2.2	24	82	3	61	57	7	0	34	1.27
58144479--58144534	25	2.2	25	93	0	94	46	1	12	39	1.52
58151062--58151113	27	1.9	27	84	7	70	44	7	25	23	1.79
58159739--58159936	96	2.1	96	96	0	360	39	14	15	31	1.87
58165735--58165759	5	5.0	5	100	0	50	20	20	20	40	1.92
58167807--58167849	19	2.3	18	84	8	50	53	4	4	37	1.43
58168992--58169059	29	2.3	29	80	5	75	45	16	13	25	1.83
58170768--58170797	11	2.6	11	94	5	51	36	3	0	60	1.14
58175892--58175922	16	1.9	16	93	0	53	70	6	0	22	1.09
58180105--58180170	26	2.5	26	78	4	71	69	1	0	28	0.97
58180098--58180175	9	8.8	9	78	12	63	66	1	0	32	1.00
58180192--58180234	3	14.3	3	100	0	86	34	0	0	65	0.93
58180466--58180501	14	2.5	15	90	4	56	58	0	2	38	1.13
58185955--58185984	6	5.0	6	100	0	60	33	0	0	66	0.92
58196029--58196102	29	2.5	29	82	4	85	25	14	13	45	1.82
58201704--58201754	22	2.5	20	77	6	57	60	0	1	37	1.08
58201722--58201770	15	3.5	15	69	25	52	61	0	4	34	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58201717--58201769	27	1.9	27	88	3	79	64	0	3	32	1.12
58201727--58201839	40	2.9	38	83	6	145	61	0	1	36	1.06
58201727--58201839	39	2.9	39	84	6	149	61	0	1	36	1.06
58201743--58201819	11	7.4	11	77	15	74	61	0	1	37	1.05
58201804--58201849	15	2.9	17	78	21	55	58	0	0	41	0.98
58202235--58202280	21	2.1	22	84	8	58	60	8	2	28	1.38
58204745--58204790	12	3.7	12	83	16	58	73	0	26	0	0.83
58207333--58207360	14	2.0	14	100	0	56	14	14	35	35	1.86
58208871--58208908	19	2.0	20	89	5	60	65	13	0	21	1.26
58212163--58212217	4	13.8	4	100	0	110	49	0	25	25	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204