genome.fa.s26.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  194  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57306400--57306451	15	3.7	14	78	12	54	0	13	3	82	0.80
57310131--57310183	15	3.3	15	73	14	52	41	9	7	41	1.66
57310189--57310246	17	3.4	16	75	11	62	44	15	15	24	1.85
57310258--57310299	19	2.2	20	86	4	59	45	7	19	28	1.76
57310270--57310312	20	2.2	20	87	8	61	37	6	16	39	1.75
57310188--57310367	18	9.9	18	69	13	104	43	12	15	29	1.82
57310664--57310716	17	3.1	16	78	10	61	71	1	0	26	0.96
57310846--57310935	7	12.6	7	76	16	87	0	17	0	82	0.68
57310845--57310931	11	8.5	10	78	13	88	0	18	0	81	0.69
57311090--57311127	15	2.5	15	91	8	60	0	2	10	86	0.66
57311208--57311253	7	7.0	7	97	2	71	0	15	0	84	0.62
57311205--57311324	3	42.3	3	88	6	164	0	26	0	73	0.84
57311716--57311817	30	3.4	30	83	2	125	44	4	21	29	1.73
57312927--57313038	28	3.9	29	74	9	95	30	16	3	50	1.62
57312925--57313038	30	3.9	30	70	9	99	29	15	3	50	1.61
57313310--57313369	21	3.1	20	77	13	63	63	0	36	0	0.95
57313311--57313366	20	2.7	21	80	5	69	66	0	33	0	0.92
57313322--57313371	18	2.6	19	79	17	59	60	0	40	0	0.97
57313459--57313492	6	5.3	6	93	6	50	79	0	20	0	0.73
57313762--57313803	11	3.8	11	78	9	50	80	0	19	0	0.70
57313936--57313991	5	10.2	5	80	14	58	21	0	1	76	0.87
57313955--57313992	16	2.4	16	90	0	67	23	0	0	76	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57314190--57314224	18	1.9	18	94	0	61	40	8	11	40	1.72
57314330--57314592	17	14.9	18	79	9	258	28	12	11	46	1.77
57314330--57314593	35	7.5	35	77	8	266	28	12	11	46	1.77
57317717--57317762	23	2.0	23	95	0	83	54	13	2	30	1.50
57318001--57318042	20	2.2	20	82	4	50	7	19	19	54	1.66
57319330--57319382	18	2.9	18	77	0	52	43	13	20	22	1.86
57319353--57319389	18	2.1	18	94	0	65	40	13	21	24	1.89
57321784--57321834	18	2.9	17	80	5	50	66	1	1	29	1.13
57328570--57328616	13	3.8	13	80	11	62	40	17	27	14	1.89
57328571--57328621	24	2.1	24	100	0	102	39	15	31	13	1.87
57334312--57334366	21	2.5	22	76	11	58	5	16	32	45	1.70
57334337--57334375	12	3.2	12	85	0	51	2	20	33	43	1.65
57334983--57335040	30	1.9	30	89	0	89	50	10	10	29	1.70
57336057--57336195	3	46.3	3	82	0	98	0	18	33	47	1.49
57336046--57336201	15	10.8	14	79	9	131	0	17	34	47	1.48
57336046--57336207	42	3.8	42	87	4	209	0	17	34	48	1.48
57336059--57336204	6	24.3	6	85	0	157	0	17	33	49	1.47
57336260--57336308	15	3.3	15	79	0	53	6	14	36	42	1.70
57338262--57338294	1	33.0	1	93	0	57	0	3	0	96	0.20
57340267--57340362	30	3.2	30	67	14	72	37	6	14	41	1.71
57340284--57340378	29	3.2	29	67	11	75	35	7	12	44	1.71
57341966--57342088	31	4.0	31	81	6	110	38	16	10	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57346641--57347140	82	6.1	82	90	0	743	24	20	24	31	1.98
57347180--57347824	134	4.8	134	86	3	924	28	23	19	28	1.98
57347455--57347574	44	2.7	45	76	6	120	26	23	19	30	1.98
57347133--57347824	264	2.6	266	85	3	903	28	23	19	28	1.98
57347755--57348207	44	10.3	45	74	4	377	29	26	15	28	1.96
57347757--57348174	88	4.7	88	83	2	464	28	26	16	28	1.97
57347104--57347887	398	2.0	397	86	5	1120	29	23	19	27	1.98
57347755--57348174	175	2.4	176	83	4	508	29	26	15	28	1.96
57349683--57349756	12	6.4	11	75	21	55	5	8	6	79	1.04
57349683--57349756	24	3.2	23	80	14	89	5	8	6	79	1.04
57351037--57351218	62	3.0	62	89	4	275	32	5	20	41	1.75
57361199--57361981	242	3.2	240	78	9	588	35	17	14	32	1.90
57393118--57393146	1	29.0	1	100	0	58	100	0	0	0	0.00
57394477--57394673	44	4.7	42	71	15	156	32	20	19	26	1.97
57394477--57394749	41	6.7	40	67	18	114	31	19	20	28	1.97
57394684--57395028	87	3.9	87	73	10	306	29	20	23	26	1.99
57394679--57395026	46	8.0	44	73	9	194	29	19	23	26	1.98
57394600--57395011	174	2.4	169	85	6	544	30	19	22	27	1.98
57394686--57395026	44	7.9	41	71	12	175	29	20	23	26	1.99
57394773--57395012	131	1.9	128	81	7	297	29	20	22	27	1.99
57399498--57399949	234	1.9	233	86	5	644	42	7	7	42	1.62
57410051--57410088	19	2.0	19	85	10	51	18	7	13	60	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57411769--57411825	9	6.3	9	78	8	62	24	22	33	19	1.97
57420584--57420631	25	1.9	25	82	0	60	56	0	6	37	1.25
57422868--57422910	23	2.0	21	82	13	52	76	2	16	4	1.05
57428189--57428276	45	1.9	46	88	2	133	47	15	4	31	1.66
57429558--57429614	28	2.0	28	100	0	114	35	7	21	36	1.80
57429693--57429717	9	2.8	9	100	0	50	60	24	8	8	1.52
57430421--57430445	12	2.1	12	100	0	50	92	0	8	0	0.40
57431025--57431080	29	1.9	29	88	0	85	48	19	10	21	1.79
57431213--57431255	22	2.0	22	90	0	68	27	9	16	46	1.77
57432703--57432733	3	10.3	3	92	0	53	38	29	32	0	1.57
57432850--57432884	6	5.8	6	86	0	52	31	0	54	14	1.40
57437176--57437213	18	2.1	18	100	0	76	55	5	15	23	1.61
57441206--57441239	16	2.1	16	88	0	50	50	14	17	17	1.79
57444036--57444076	21	2.0	21	90	0	64	29	21	29	19	1.98
57445978--57446011	16	2.1	16	88	0	50	50	14	17	17	1.79
57449261--57449351	11	8.9	11	68	24	56	61	0	2	36	1.08
57449335--57449381	18	2.7	17	80	6	58	59	0	0	40	0.97
57454716--57454756	21	2.0	20	85	4	55	43	2	0	53	1.13
57455297--57455392	27	3.6	27	97	1	176	35	41	7	15	1.75
57456508--57456557	3	16.7	3	83	8	57	26	4	0	70	1.05
57466484--57466539	29	1.9	29	85	7	78	37	12	8	41	1.74
57469300--57469329	11	2.6	11	94	5	51	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57469319--57469373	22	2.8	20	76	13	51	45	0	3	50	1.19
57473410--57473451	19	2.0	22	86	13	63	45	0	0	54	0.99
57474777--57474839	31	2.0	31	87	6	92	42	6	9	41	1.63
57488954--57488985	16	1.9	17	93	6	57	37	3	3	56	1.31
57490905--57490969	28	2.4	28	82	5	71	60	7	10	21	1.55
57492564--57492609	18	2.4	20	85	7	60	67	2	30	0	1.03
57502675--57502705	15	2.1	15	100	0	62	22	6	12	58	1.58
57504635--57504660	3	8.7	3	100	0	52	34	0	0	65	0.93
57504905--57504987	25	3.2	26	77	5	78	42	6	0	51	1.26
57513676--57513704	13	2.1	14	93	6	51	58	3	31	6	1.41
57523131--57523227	27	3.0	35	63	27	95	17	17	12	52	1.74
57523716--57523820	52	2.0	52	92	0	174	44	13	15	26	1.83
57531231--57531258	5	5.6	5	100	0	56	82	0	0	17	0.68
57555043--57555615	245	2.3	244	94	0	975	35	14	15	34	1.87
57560479--57560539	28	2.2	28	90	0	95	24	24	13	37	1.91
57563499--57563525	8	3.4	8	100	0	54	55	0	0	44	0.99
57563507--57563564	30	1.9	31	85	3	82	53	1	6	37	1.38
57568216--57568253	16	2.4	16	95	0	67	36	0	2	60	1.11
57569063--57569111	15	3.2	15	91	2	71	42	0	2	55	1.11
57567720--57570285	860	3.0	853	91	1	4219	36	13	16	33	1.88
57569915--57569966	16	3.2	16	81	5	59	38	0	0	61	0.96
57573407--57573526	26	4.8	26	79	11	117	20	25	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57575753--57576000	50	4.8	51	82	7	254	20	29	23	26	1.99
57575752--57576000	105	2.4	101	87	7	342	20	28	23	26	1.99
57576094--57576125	13	2.5	13	94	0	55	56	12	0	31	1.37
57576337--57576394	30	1.9	30	89	0	89	31	24	3	41	1.71
57580001--57580039	17	2.4	16	84	16	53	0	15	10	74	1.07
57583952--57584009	29	2.0	29	96	0	107	34	0	22	43	1.54
57584045--57584123	34	2.2	35	80	8	88	54	1	3	40	1.26
57586216--57586244	15	2.0	15	93	6	51	51	0	0	48	1.00
57587955--57588034	36	2.3	35	89	4	117	53	11	1	33	1.44
57597318--57597355	20	1.9	19	85	15	51	52	10	2	34	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204