genome.fa.s26.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  166  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49937374--49938145	352	2.2	351	88	4	1092	29	17	24	28	1.97
49937993--49938361	176	2.1	176	92	0	612	29	17	24	29	1.97
49938037--49938317	88	3.2	86	71	15	277	29	17	23	29	1.97
49937370--49938471	308	3.6	307	78	9	1172	30	17	24	28	1.97
49938638--49939194	50	11.2	50	69	2	350	30	21	21	25	1.98
49938636--49939247	99	6.2	99	87	1	762	31	21	20	26	1.98
49941409--49941452	3	14.7	3	95	0	79	0	2	29	68	1.02
49941591--49941627	16	2.3	16	95	0	65	29	2	0	67	1.04
49941784--49941830	6	8.0	6	80	4	51	36	8	2	53	1.44
49942155--49942296	71	2.0	72	94	1	250	27	17	19	35	1.94
49943474--49943540	9	7.4	9	84	0	80	46	22	5	25	1.74
49943473--49943540	27	2.5	27	90	0	100	47	22	5	25	1.73
49943483--49943532	18	2.8	18	96	0	91	48	24	4	24	1.68
49946036--49946093	5	10.8	5	80	12	62	43	0	1	55	1.10
49946037--49946094	8	6.7	9	74	21	61	43	0	1	55	1.10
49946039--49946094	12	4.5	12	81	16	69	42	0	1	55	1.10
49947407--49947445	18	2.1	19	90	4	62	41	0	10	48	1.37
49947683--49947782	38	2.5	40	71	14	100	22	20	29	29	1.98
49947941--49947981	19	2.2	19	87	12	59	46	0	24	29	1.53
49952467--49952524	5	10.8	5	80	12	62	43	0	1	55	1.10
49952468--49952525	8	6.7	9	74	21	61	43	0	1	55	1.10
49952470--49952525	12	4.5	12	81	16	69	42	0	1	55	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49953839--49953877	18	2.1	19	90	4	62	41	0	10	48	1.37
49954117--49954251	39	3.4	39	74	6	112	23	20	28	28	1.99
49954374--49954414	19	2.2	19	87	12	59	46	0	24	29	1.53
49956579--49956623	5	8.4	5	83	11	54	40	0	2	57	1.11
49956568--49956624	8	6.6	9	72	22	50	45	0	1	52	1.11
49956569--49956624	12	4.5	12	79	16	60	44	0	1	53	1.11
49956631--49956680	10	5.0	10	79	13	50	66	12	20	2	1.34
49957032--49957079	20	2.3	19	82	13	51	47	0	18	33	1.49
49957925--49957964	19	2.1	19	86	9	55	42	0	10	47	1.37
49958041--49958074	17	2.0	17	88	11	52	35	0	17	47	1.48
49958453--49958482	12	2.5	12	88	0	51	46	0	23	30	1.52
49962998--49963054	5	10.8	5	83	9	69	43	0	1	54	1.10
49962999--49963055	26	2.2	25	85	11	80	43	0	1	54	1.10
49964369--49964407	18	2.1	19	90	4	62	41	0	10	48	1.37
49964903--49964943	19	2.2	19	87	12	59	46	0	24	29	1.53
49969432--49969489	5	10.8	5	80	12	62	43	0	1	55	1.10
49969433--49969490	8	6.7	9	74	21	61	43	0	1	55	1.10
49969435--49969490	12	4.5	12	81	16	69	42	0	1	55	1.10
49970804--49970842	18	2.1	19	90	4	62	41	0	10	48	1.37
49971336--49971376	19	2.2	19	87	12	59	46	0	24	29	1.53
49978282--49978326	19	2.4	19	85	7	56	53	0	2	44	1.13
49978293--49978406	27	4.1	27	71	22	85	57	1	1	38	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49978334--49978418	38	2.3	38	89	2	127	61	1	2	35	1.17
49978352--49978417	11	6.9	9	72	17	53	63	1	1	33	1.13
49978316--49978397	19	4.4	18	72	10	58	56	1	2	40	1.20
49978293--49978418	57	2.2	56	74	12	123	58	1	1	38	1.17
49978366--49978430	20	3.4	19	75	12	62	66	4	0	29	1.12
49978666--49978747	20	4.3	19	72	21	73	34	2	2	60	1.23
49980576--49980632	18	3.0	20	73	24	59	49	1	3	45	1.29
49985727--49985828	3	34.0	3	67	13	50	32	4	2	59	1.33
49985727--49985793	21	3.2	21	79	10	84	34	7	1	56	1.36
49986947--49986985	15	2.3	18	87	12	57	20	7	7	64	1.45
50002072--50002119	25	1.9	25	91	8	80	37	16	20	25	1.93
50002072--50002125	25	2.2	25	86	6	74	38	16	22	22	1.93
50007905--50007978	36	2.1	36	100	0	148	20	20	16	43	1.88
50011385--50011440	27	2.1	27	80	12	62	53	1	1	42	1.21
50012080--50012118	21	1.9	20	84	5	51	35	0	20	43	1.52
50013813--50013857	24	1.9	24	82	13	58	60	0	2	37	1.09
50015225--50015293	21	3.0	23	69	12	70	24	13	36	26	1.92
50023609--50023636	6	4.7	6	100	0	56	32	35	14	17	1.90
50033785--50033893	41	2.7	41	91	2	175	22	30	19	27	1.98
50033785--50033930	41	3.6	40	83	9	172	23	28	19	28	1.98
50033785--50033942	82	1.9	81	85	10	214	24	27	18	29	1.98
50035818--50035850	16	2.1	16	88	5	50	42	21	0	36	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50037398--50037456	29	2.0	29	93	0	100	28	18	8	44	1.79
50041453--50041506	16	3.4	16	92	0	90	37	3	33	25	1.74
50041488--50041580	44	2.1	44	84	9	118	33	4	26	35	1.76
50043251--50043315	29	2.2	30	84	13	91	30	1	4	63	1.24
50043251--50043315	10	6.7	10	71	11	55	30	1	4	63	1.24
50046242--50046284	21	2.0	21	100	0	86	34	4	18	41	1.71
50050246--50050287	10	4.6	9	80	14	50	73	2	11	11	1.18
50051368--50051423	27	2.1	27	82	0	67	28	33	30	7	1.84
50051475--50051537	15	4.1	15	76	13	56	58	0	41	0	0.98
50051475--50051541	9	7.9	9	67	12	52	58	0	41	0	0.98
50051573--50051611	20	2.0	20	85	10	53	64	0	33	2	1.08
50051665--50051699	10	3.2	11	88	12	54	2	0	17	80	0.84
50051797--50052014	76	2.9	76	76	9	214	35	5	9	50	1.56
50051989--50052038	3	16.7	3	85	8	66	30	0	6	64	1.18
50054214--50054252	17	2.3	17	90	0	60	15	10	10	64	1.50
50054306--50054748	158	2.8	158	89	1	674	28	7	8	54	1.59
50054903--50054969	26	2.4	26	90	9	98	67	7	2	22	1.30
50054926--50054972	12	3.8	12	86	10	67	70	6	0	23	1.10
50055184--50055278	11	8.9	11	76	21	96	43	2	0	54	1.12
50055195--50055275	42	2.0	39	92	7	135	41	2	0	55	1.13
50055246--50055303	21	2.7	22	84	7	66	44	1	1	51	1.21
50055730--50055772	14	3.1	14	80	10	52	0	30	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50055786--50055824	3	13.7	3	89	10	64	0	35	0	64	0.94
50055727--50055848	20	5.8	21	71	16	83	0	36	1	61	1.06
50055887--50055946	27	2.2	27	87	0	84	8	35	31	25	1.85
50064748--50065081	172	1.9	172	93	0	569	51	11	16	20	1.75
50068353--50068409	29	2.0	29	82	6	71	21	12	17	49	1.79
50068648--50068698	22	2.3	22	96	0	93	27	35	0	37	1.57
50068670--50068782	51	2.2	51	96	0	208	28	30	0	41	1.56
50069957--50070308	124	2.8	125	92	1	582	33	21	15	29	1.94
50076915--50076983	21	3.3	21	89	0	102	34	20	43	1	1.61
50076948--50077007	12	5.2	12	76	11	63	40	20	38	1	1.62
50077414--50077550	43	3.2	41	82	10	152	26	21	22	29	1.99
50077425--50077550	42	3.0	42	82	7	157	27	22	20	29	1.98
50077963--50078002	20	2.0	20	85	9	55	37	0	2	60	1.11
50078391--50078444	23	2.2	25	78	12	60	68	1	11	18	1.28
50088268--50088324	11	5.3	11	79	12	64	71	3	1	22	1.10
50097374--50097401	6	4.7	6	100	0	56	14	14	0	71	1.15
50106670--50106723	23	2.5	23	82	8	60	61	7	0	31	1.24
50106896--50107016	44	2.8	44	79	12	108	64	0	7	28	1.20
50106902--50107016	21	5.2	24	74	20	92	62	0	7	29	1.23
50106936--50107011	15	5.1	15	76	19	63	67	0	5	27	1.12
50106930--50107009	23	3.8	20	79	12	65	66	0	6	27	1.16
50115506--50115733	46	5.0	46	92	1	341	22	23	14	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50119464--50119587	41	3.0	40	88	2	185	36	25	20	18	1.95
50123385--50123541	78	2.0	78	86	3	217	37	15	19	27	1.92
50137485--50137611	41	3.1	41	86	0	182	37	24	19	18	1.94
50141984--50142009	8	3.2	8	100	0	52	76	0	0	23	0.78
50147504--50147572	30	2.5	27	79	13	79	47	18	0	33	1.49
50148247--50148319	31	2.4	31	81	9	87	5	19	2	72	1.16
50148246--50148314	25	2.7	24	82	15	68	5	20	1	72	1.13
50148319--50148358	7	5.6	7	85	5	53	50	0	0	50	1.00
50150549--50150616	23	3.0	23	82	4	84	19	20	20	39	1.92
50151064--50151181	61	1.9	61	96	0	218	35	7	18	38	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204