genome.fa.s26.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  117  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36386263--36386309	23	2.0	23	91	0	76	14	25	10	48	1.76
36392943--36392967	12	2.1	12	100	0	50	28	32	16	24	1.96
36393068--36393131	21	3.0	21	79	2	74	20	28	17	34	1.95
36398699--36398737	20	2.0	20	90	10	62	28	12	33	25	1.93
36400682--36400723	22	1.9	22	90	0	66	38	0	16	45	1.48
36404148--36404390	63	3.9	63	82	5	296	43	15	5	35	1.70
36405976--36406041	26	2.5	27	75	5	71	13	40	3	42	1.60
36408706--36408741	17	2.1	17	89	5	54	19	2	11	66	1.35
36412306--36412348	21	2.0	21	86	8	61	34	0	6	58	1.25
36412331--36412406	35	2.2	34	84	9	93	43	2	5	48	1.39
36412414--36412465	24	2.2	24	100	0	104	32	3	3	59	1.33
36412575--36412660	45	2.0	43	84	13	113	39	26	3	30	1.73
36434642--36434794	69	2.2	69	81	2	182	20	22	20	36	1.95
36436949--36436988	21	1.9	21	94	0	71	22	32	7	37	1.82
36437392--36437499	40	2.7	40	82	5	119	37	17	19	25	1.93
36437442--36437580	41	3.4	41	75	10	115	38	21	18	21	1.94
36437403--36437580	40	4.3	40	75	9	128	39	19	18	22	1.92
36440607--36440733	66	1.9	67	88	4	195	43	18	23	14	1.87
36441009--36441105	44	2.2	44	85	7	126	31	27	14	25	1.95
36443130--36443176	23	2.0	23	87	0	67	61	4	2	31	1.27
36443140--36443164	13	1.9	13	100	0	50	64	0	0	36	0.94
36443231--36443286	17	3.5	16	75	20	55	66	1	0	32	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36443336--36443377	19	2.2	20	95	4	77	69	9	0	21	1.17
36443808--36443835	4	7.0	4	100	0	56	75	0	0	25	0.81
36445253--36445310	30	1.9	30	85	0	80	39	0	39	20	1.53
36445522--36445549	9	3.1	9	100	0	56	32	10	10	46	1.73
36448181--36448215	17	2.0	17	88	5	52	48	2	0	48	1.16
36456603--36456635	15	2.2	15	94	0	57	48	3	12	36	1.56
36484647--36484695	19	2.6	20	87	12	77	57	0	4	38	1.18
36486159--36486210	26	2.0	26	100	0	104	26	15	26	30	1.96
36494543--36494604	26	2.4	26	86	5	81	30	9	14	45	1.77
36496502--36496556	26	2.1	27	96	3	103	40	21	7	30	1.81
36497059--36497084	11	2.4	11	100	0	52	73	0	0	26	0.84
36520121--36520160	18	2.2	18	100	0	80	37	5	30	27	1.78
36531932--36531973	17	2.5	17	92	0	66	45	11	0	42	1.41
36535298--36535349	26	2.0	25	82	10	61	34	5	25	34	1.80
36538074--36538100	12	2.2	12	100	0	54	14	22	33	29	1.94
36539278--36539396	50	2.4	50	81	5	125	28	20	18	32	1.96
36539297--36539396	25	4.0	25	81	5	105	29	20	18	33	1.96
36550785--36550833	25	2.0	25	84	15	66	46	14	4	34	1.63
36560173--36560211	17	2.3	18	86	8	55	43	2	0	53	1.14
36560896--36560933	14	2.9	14	81	18	55	50	0	0	50	1.00
36561056--36561080	8	3.1	8	100	0	50	24	12	0	64	1.27
36561918--36561976	24	2.4	24	74	20	59	52	3	3	40	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36562873--36562906	17	1.9	18	88	5	52	82	2	8	5	0.93
36563784--36564056	100	2.7	100	88	0	411	23	27	22	27	1.99
36563795--36564061	50	5.3	50	72	1	248	23	26	21	27	1.99
36564249--36564569	88	3.6	88	88	1	439	24	26	19	28	1.99
36569309--36569372	27	2.5	25	85	12	78	64	3	15	17	1.42
36569328--36569384	27	2.1	27	87	6	80	64	8	10	15	1.48
36576510--36576568	24	2.4	24	74	20	59	52	3	3	40	1.35
36577466--36577503	16	2.3	16	83	16	51	81	2	7	7	0.96
36579923--36579969	16	3.3	15	82	17	64	29	0	0	70	0.88
36579898--36579946	24	1.9	24	88	12	71	22	4	0	73	1.00
36579928--36579969	6	7.3	6	80	20	54	30	0	0	69	0.89
36579928--36579990	27	2.3	26	84	13	74	30	1	0	68	0.99
36580030--36580088	17	3.5	17	76	6	66	28	1	0	69	0.98
36580132--36580177	10	4.6	10	80	0	56	23	0	6	69	1.11
36580130--36580189	21	2.9	21	76	11	61	28	0	5	66	1.12
36584727--36584769	22	1.9	22	85	4	59	58	4	6	30	1.45
36603667--36603735	16	4.3	16	87	7	104	40	5	33	20	1.76
36603667--36603735	32	2.2	32	94	5	122	40	5	33	20	1.76
36603715--36603828	44	2.6	45	85	5	160	31	5	30	32	1.80
36603970--36604004	18	2.0	17	88	5	52	54	0	0	45	0.99
36604067--36604118	14	3.6	14	75	14	52	53	0	1	44	1.11
36603964--36604184	117	1.9	120	91	5	369	50	4	1	42	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36606846--36606936	46	2.0	46	93	0	155	40	18	13	27	1.88
36607933--36607982	17	2.9	17	81	3	64	56	8	0	36	1.29
36613087--36613356	43	6.3	43	86	3	364	31	29	17	21	1.96
36613087--36613356	130	2.1	128	86	5	375	31	29	17	21	1.96
36613087--36613356	87	3.1	84	86	5	362	31	29	17	21	1.96
36618638--36618724	42	2.1	42	97	0	165	20	27	16	35	1.94
36627348--36627397	22	2.3	22	96	0	91	28	40	20	12	1.87
36633536--36633574	16	2.6	16	92	8	64	43	0	33	23	1.54
36633823--36633921	47	2.1	48	96	1	182	46	0	7	46	1.30
36634345--36634373	15	1.9	15	100	0	58	34	51	0	13	1.42
36634643--36634683	22	1.9	21	85	5	55	36	39	0	24	1.56
36634954--36635002	7	6.9	7	76	4	53	32	46	0	20	1.51
36634964--36635004	15	2.8	15	88	3	57	36	46	0	17	1.48
36635025--36635062	14	2.7	15	88	12	62	42	31	0	26	1.56
36636185--36636631	208	2.2	205	85	4	605	33	27	19	19	1.96
36636185--36636653	41	11.4	41	82	8	524	34	27	19	19	1.96
36640273--36640298	8	3.2	8	100	0	52	76	0	0	23	0.78
36642542--36642579	17	2.2	17	95	0	67	18	21	39	21	1.93
36644361--36644469	29	3.8	29	76	0	92	46	14	20	18	1.83
36645746--36645974	43	5.4	42	81	8	232	29	20	22	27	1.98
36645751--36645973	85	2.6	85	82	6	247	30	20	22	26	1.98
36646408--36646447	12	3.3	12	89	0	62	5	40	15	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36646405--36646500	21	4.4	21	76	7	84	4	41	17	36	1.69
36651993--36652043	7	6.7	7	91	8	66	31	0	17	50	1.46
36651998--36652392	9	43.8	9	77	7	358	32	3	17	47	1.64
36652110--36652392	37	7.7	36	88	2	368	32	2	16	48	1.61
36652049--36652369	73	4.4	73	89	2	378	32	2	17	47	1.62
36652554--36652591	16	2.4	16	91	4	60	52	5	0	42	1.24
36652588--36652615	13	2.2	13	100	0	56	46	7	7	39	1.59
36652584--36652633	17	3.2	17	81	18	72	52	6	6	36	1.51
36653917--36654296	191	2.0	191	89	0	580	44	12	23	18	1.85
36654959--36655002	21	2.1	21	83	8	54	38	36	0	25	1.56
36655136--36655255	21	5.6	22	66	21	76	43	34	0	21	1.59
36655668--36656543	114	7.7	114	87	4	1232	24	20	21	34	1.97
36656797--36657023	126	1.8	126	89	1	357	36	13	4	45	1.64
36657439--36657551	39	2.8	41	89	7	178	23	23	24	28	2.00
36658743--36658806	31	2.1	30	85	11	85	42	7	1	48	1.41
36661686--36661717	3	10.7	3	100	0	64	31	0	0	68	0.90
36663706--36663981	86	3.2	84	81	7	279	21	15	30	32	1.94
36663706--36663981	42	6.5	41	77	8	248	21	15	30	32	1.94
36664734--36664777	22	1.9	24	86	9	65	63	4	0	31	1.14
36666978--36667017	3	13.0	3	89	5	62	65	0	2	32	1.06
36672953--36673190	124	1.9	124	92	0	395	27	22	16	34	1.95
36674648--36674759	9	12.2	9	86	3	161	35	33	9	20	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36675454--36675493	16	2.5	16	91	0	62	27	5	32	35	1.79
36682701--36682737	19	1.9	19	94	0	65	13	32	0	54	1.40
36697413--36697477	28	2.4	28	82	7	71	50	9	1	38	1.44
36700137--36700230	47	2.0	47	95	0	170	48	8	19	23	1.75
36710894--36710949	21	2.7	21	77	0	58	39	19	39	1	1.62
36712824--36712862	18	2.0	20	85	9	55	66	7	5	20	1.36
36712932--36713090	85	1.9	85	98	0	309	57	13	5	23	1.57
36714244--36714282	12	3.2	12	85	0	51	38	0	12	48	1.42
36714340--36714421	2	41.5	2	72	11	53	51	0	8	40	1.33
36714370--36714395	7	3.7	7	100	0	52	69	0	0	30	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204