genome.fa.s26.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  102  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31748536--31748814	150	1.8	152	84	8	379	26	23	27	22	1.99
31760717--31760743	6	4.5	6	100	0	54	85	0	0	14	0.61
31764934--31765021	46	1.9	46	97	0	167	40	14	21	22	1.90
31770242--31770286	20	2.2	21	84	7	58	71	6	0	22	1.09
31792212--31792393	62	2.9	62	93	1	294	43	4	2	48	1.37
31793304--31793342	9	4.1	9	90	6	51	33	0	0	66	0.92
31793304--31793342	19	2.1	19	85	9	53	33	0	0	66	0.92
31803108--31803150	21	2.0	23	90	9	72	27	0	4	67	1.10
31803113--31803171	21	2.7	22	82	12	61	30	0	3	66	1.08
31804308--31804440	50	2.7	50	84	2	133	43	10	12	33	1.76
31804450--31804513	32	2.0	33	90	3	103	54	10	7	26	1.62
31805350--31805392	13	3.3	12	76	17	50	48	9	0	41	1.35
31813948--31814001	19	2.8	20	88	2	74	46	12	11	29	1.77
31816094--31816152	20	3.0	20	82	5	66	44	10	11	33	1.75
31820555--31820589	16	2.2	16	89	0	52	77	0	0	22	0.78
31823642--31823682	21	2.0	21	90	0	64	29	14	2	53	1.54
31825109--31825175	27	2.5	27	83	7	84	29	14	11	43	1.82
31825319--31825345	6	4.5	6	100	0	54	14	29	0	55	1.40
31827475--31827530	28	2.0	28	100	0	112	35	17	3	42	1.67
31830219--31830258	14	2.8	14	88	3	53	22	17	2	57	1.52
31830634--31830736	43	2.4	43	86	1	152	26	26	21	26	1.99
31830634--31830819	43	4.3	42	78	11	135	25	26	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31830704--31830820	42	2.7	42	79	13	130	25	26	17	29	1.98
31831167--31831343	87	2.0	87	92	0	291	11	31	17	38	1.86
31831253--31831303	21	2.4	21	93	0	84	1	47	17	33	1.59
31834889--31834984	31	3.1	31	95	3	174	45	13	9	31	1.75
31841030--31841125	31	3.1	31	92	3	165	46	13	9	30	1.74
31843743--31844040	16	17.9	16	73	16	125	31	0	18	49	1.52
31843785--31843841	25	2.3	25	84	6	71	26	1	22	49	1.60
31843802--31843858	9	6.8	9	80	15	59	28	0	21	50	1.48
31843840--31844013	21	8.2	21	68	20	87	33	0	15	50	1.49
31843815--31844027	74	2.9	73	76	18	201	32	0	16	50	1.50
31843912--31843953	7	5.7	7	83	10	57	28	2	16	52	1.56
31843938--31844033	44	2.2	44	94	0	165	32	1	15	51	1.51
31843823--31844011	83	2.3	81	79	15	226	32	0	16	50	1.49
31843983--31844063	37	2.2	37	80	8	94	32	1	16	50	1.53
31844087--31844319	126	1.8	123	83	8	308	48	4	6	40	1.49
31844315--31844403	18	4.8	18	79	14	101	42	1	11	44	1.47
31844343--31844400	17	3.4	17	78	9	64	41	1	12	44	1.51
31844307--31844450	39	3.8	37	80	12	141	43	2	11	43	1.51
31845135--31845167	13	2.5	14	85	14	52	63	12	15	9	1.51
31845710--31847043	337	4.0	337	91	1	2059	33	18	16	30	1.94
31845710--31847036	673	2.0	673	90	1	2095	33	18	16	30	1.94
31848419--31848530	40	2.8	41	79	2	109	35	30	20	13	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31857779--31857819	21	2.0	21	85	0	55	41	2	17	39	1.62
31860410--31860450	21	2.0	21	85	9	57	39	4	0	56	1.21
31865647--31865687	19	2.1	20	95	4	75	36	9	14	39	1.79
31867573--31867612	19	2.1	19	100	0	80	27	32	25	15	1.95
31868962--31869004	22	1.9	23	90	4	70	23	4	6	65	1.37
31870918--31870964	21	2.2	21	92	0	76	65	0	0	34	0.93
31870931--31871010	30	2.7	29	83	11	92	70	0	1	28	0.96
31871542--31871566	8	3.1	8	100	0	50	64	0	0	36	0.94
31873618--31873668	26	2.0	28	81	14	65	31	9	3	54	1.51
31877491--31877529	16	2.5	15	87	4	51	23	0	28	48	1.51
31877562--31877659	35	2.7	35	87	6	124	29	4	21	44	1.70
31885432--31885481	24	2.1	24	96	0	91	22	16	14	48	1.81
31888476--31888506	15	2.1	15	93	0	53	54	0	3	41	1.16
31892292--31892613	109	3.0	107	87	2	448	35	18	16	28	1.93
31892640--31892685	21	2.2	21	84	7	58	54	2	15	28	1.53
31893250--31893283	3	11.0	3	87	6	50	61	0	2	35	1.11
31893505--31893611	53	2.0	53	98	0	205	37	22	30	9	1.86
31895346--31895387	21	2.0	22	85	4	59	64	4	7	23	1.38
31895390--31895493	37	3.0	33	76	18	95	67	1	4	25	1.21
31895404--31895487	27	3.2	26	77	12	73	69	1	5	23	1.18
31895450--31895526	16	4.8	16	69	13	50	66	1	5	27	1.21
31895863--31895924	24	2.5	26	80	10	69	27	6	0	66	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31895903--31895937	15	2.2	16	90	5	54	28	0	0	71	0.86
31896036--31896104	26	2.6	27	80	11	72	26	1	1	71	1.03
31896049--31896105	18	3.2	17	78	9	51	22	0	1	75	0.90
31896065--31896107	17	2.4	18	88	7	61	27	0	2	69	1.00
31896054--31896104	27	1.9	26	88	4	75	25	0	1	72	0.95
31904850--31904897	24	2.0	24	95	0	87	25	18	25	31	1.98
31904845--31904999	63	2.5	63	79	4	195	25	18	23	32	1.97
31922596--31922649	28	2.0	26	89	7	81	62	20	1	14	1.40
31924378--31924437	26	2.3	26	85	2	86	40	10	18	31	1.84
31924616--31924708	28	3.2	28	64	21	73	34	20	29	16	1.94
31924599--31924721	60	2.0	60	100	0	246	33	22	24	19	1.97
31926203--31926235	7	4.6	7	92	7	57	72	0	0	27	0.85
31926203--31926233	15	2.1	15	100	0	62	74	0	0	25	0.82
31927085--31927146	24	2.6	24	86	0	79	35	24	4	35	1.77
31927923--31927947	12	2.1	12	100	0	50	44	0	8	48	1.32
31935689--31935733	2	22.5	2	90	0	63	42	0	53	4	1.21
31936672--31936724	20	2.7	20	82	8	65	45	11	22	20	1.83
31938843--31938871	14	2.0	15	93	6	51	55	0	44	0	0.99
31940790--31940851	16	3.9	16	70	8	54	45	1	3	50	1.27
31940958--31941005	25	1.9	25	87	8	71	41	8	8	41	1.65
31944430--31944493	20	3.2	19	78	8	74	9	26	21	42	1.83
31946838--31946869	13	2.4	14	85	15	50	53	18	15	12	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31949092--31949740	327	2.0	327	90	0	1037	32	23	17	25	1.97
31950016--31950135	62	1.9	62	98	0	231	26	27	21	24	1.99
31952553--31952663	25	4.4	25	93	0	177	39	36	7	17	1.77
31968846--31969029	70	2.7	69	85	2	244	34	22	16	26	1.95
31969063--31969238	58	3.1	56	79	8	194	38	18	13	29	1.89
31970850--31970881	16	2.0	16	93	0	55	40	6	9	43	1.62
31971102--31971400	51	5.9	50	82	6	320	25	16	27	31	1.96
31971239--31971367	25	5.1	25	62	29	67	24	14	29	31	1.95
31971098--31971400	102	3.0	102	86	7	411	25	16	27	31	1.96
31971098--31971400	153	2.0	152	83	5	389	25	16	27	31	1.96
31971618--31971649	16	2.0	16	100	0	64	62	0	12	25	1.30
31978014--31978038	5	5.0	5	100	0	50	0	20	0	80	0.72
31978578--31978614	19	1.9	19	88	0	56	64	2	0	32	1.07
31986254--31986291	15	2.5	16	83	12	53	52	2	0	44	1.14
31986442--31986511	7	9.9	7	90	3	113	54	0	15	30	1.42
31986442--31986511	36	1.9	36	94	0	122	54	0	15	30	1.42
31986443--31986532	14	6.4	14	87	2	99	47	0	22	30	1.51
31986443--31986554	14	7.9	14	84	5	73	44	0	24	30	1.60
31986507--31986554	7	6.9	7	83	9	62	31	2	35	31	1.70
31986866--31986987	10	12.7	9	69	17	59	30	1	2	65	1.15
31986867--31986987	19	6.3	19	68	13	70	30	1	2	65	1.15
31986864--31986948	29	3.0	27	75	13	82	27	1	2	69	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31987185--31987220	18	2.0	18	88	0	54	33	13	13	38	1.85
31988088--31988140	16	3.3	16	81	5	63	60	13	5	20	1.53
31997733--31998289	166	3.4	165	86	2	731	31	22	20	25	1.98
31998649--31998694	23	2.0	24	87	8	69	23	8	28	39	1.84
31998773--31998815	14	3.1	14	76	6	52	16	4	25	53	1.62
31998845--31998904	22	2.8	22	78	12	70	18	6	43	31	1.76
31999016--31999078	28	2.2	28	83	5	83	30	3	23	42	1.70
31999016--31999076	14	4.4	14	74	14	54	31	3	21	44	1.68
31999145--31999197	21	2.5	21	72	6	54	26	0	20	52	1.46
31999609--31999837	83	2.8	83	77	9	263	28	15	20	34	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204