genome.fa.s26.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  188  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55847916--55848102	82	2.3	82	96	0	338	28	21	12	37	1.89
55847834--55848070	118	2.0	118	94	0	420	29	20	14	36	1.92
55851487--55851536	24	2.1	24	85	3	66	24	14	14	48	1.80
55859994--55860111	17	7.1	17	67	21	54	60	0	4	34	1.22
55862103--55862174	29	2.4	29	81	9	74	34	8	11	45	1.70
55862130--55862196	29	2.3	30	84	7	84	34	7	8	49	1.62
55865963--55866023	31	2.0	31	87	6	88	24	21	21	32	1.98
55869079--55869109	3	10.7	3	93	6	55	35	0	0	64	0.94
55881998--55882056	30	1.9	31	89	3	93	42	10	11	35	1.76
55886669--55886702	17	2.0	17	88	0	50	29	11	2	55	1.50
55889252--55889325	29	2.5	29	86	4	94	48	14	14	21	1.80
55891638--55891679	16	2.6	16	84	0	57	28	21	11	38	1.89
55893679--55893719	18	2.1	20	86	13	59	63	2	4	29	1.28
55895058--55895089	15	2.0	17	88	11	50	46	0	3	50	1.17
55896311--55896445	40	3.4	40	77	11	152	32	23	17	25	1.97
55896602--55896648	24	2.0	24	84	16	62	51	17	0	31	1.46
55896970--55897005	18	1.9	19	88	5	56	33	27	0	38	1.57
55898973--55898998	13	2.0	13	100	0	52	84	0	0	15	0.62
55901718--55901754	15	2.5	15	91	8	58	70	5	2	21	1.20
55907360--55907393	16	2.1	16	88	0	50	50	14	17	17	1.79
55910157--55910197	21	2.0	21	90	0	64	29	21	29	19	1.98
55912102--55912135	16	2.1	16	88	0	50	50	14	17	17	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55921073--55921107	18	1.9	18	94	0	61	31	11	11	45	1.76
55921380--55921455	23	3.5	22	68	23	63	32	5	18	43	1.72
55921403--55921472	17	3.7	17	68	23	50	30	2	18	48	1.62
55921377--55921440	19	3.3	19	66	23	51	29	4	18	46	1.69
55921366--55921485	41	3.0	40	93	2	204	31	5	17	45	1.70
55923496--55923582	33	2.6	33	96	0	165	31	24	24	20	1.98
55930171--55930218	13	3.7	13	85	0	69	35	16	6	41	1.74
55933097--55933131	16	2.2	16	89	0	52	48	20	2	28	1.63
55937926--55937952	9	3.0	9	100	0	54	0	55	22	22	1.44
55939297--55939393	33	2.9	34	72	20	87	45	2	1	51	1.19
55939579--55939614	13	2.8	13	82	0	54	33	16	8	41	1.78
55944657--55944691	15	2.3	15	90	0	52	48	0	2	48	1.16
55951862--55952027	43	3.9	43	79	9	187	20	20	27	31	1.97
55956509--55956555	21	2.2	21	88	7	69	36	0	2	61	1.08
55956565--55956619	26	2.0	28	89	6	87	36	0	5	58	1.21
55957563--55957600	17	2.2	18	81	13	53	55	0	2	42	1.14
55958368--55958414	24	2.0	24	84	16	62	31	0	17	51	1.46
55964105--55964158	23	2.3	23	78	12	58	35	0	3	61	1.14
55972385--55972436	26	2.0	26	88	3	77	59	1	0	38	1.08
55972436--55972465	11	2.7	11	89	0	51	50	0	3	46	1.18
55974521--55974545	2	12.5	2	100	0	50	48	0	0	52	1.00
55975387--55975451	30	2.1	32	83	8	82	38	6	16	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55978782--55978844	31	2.0	31	93	0	108	39	6	14	39	1.71
55980941--55980986	16	3.0	16	71	9	51	58	6	0	34	1.24
55981494--55981578	22	3.8	22	71	3	62	65	11	7	15	1.44
55983013--55983071	30	2.0	29	83	6	75	37	1	3	57	1.25
55983540--55983589	7	7.3	7	90	4	84	60	0	0	40	0.97
55983541--55983601	21	3.1	20	88	6	81	62	0	0	37	0.96
55996873--55996943	19	3.7	19	72	7	54	33	1	11	53	1.45
55997736--55997782	21	2.1	23	84	7	62	34	0	0	65	0.93
55997774--55997837	17	3.5	17	74	15	65	40	0	0	59	0.97
55997756--55997858	38	2.7	38	83	8	138	36	0	0	62	1.02
55997783--55997811	11	2.5	12	88	11	51	48	0	0	51	1.00
55997787--55997847	11	6.0	11	76	20	62	40	1	0	57	1.08
55997749--55997810	27	2.3	27	85	2	79	37	0	0	62	0.95
55997792--55997862	27	2.4	31	86	13	105	39	1	0	59	1.06
55997830--55997869	21	1.9	21	89	0	62	37	2	0	60	1.11
56003109--56003138	11	2.7	11	94	0	51	76	0	23	0	0.78
56012994--56013025	6	5.3	6	92	0	55	0	18	37	43	1.51
56017851--56017899	24	2.2	24	86	13	70	48	0	2	48	1.12
56017876--56017941	30	2.4	27	75	20	73	48	0	1	50	1.10
56019334--56019370	3	12.3	3	100	0	74	35	0	0	64	0.94
56040732--56040764	16	2.1	16	88	5	50	36	3	0	60	1.12
56041182--56041229	25	2.0	22	84	11	60	47	6	6	39	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56044389--56044426	17	2.1	19	85	9	53	21	13	10	55	1.67
56047413--56047480	21	3.2	21	95	2	118	20	20	38	20	1.94
56051345--56051394	21	2.4	21	83	3	57	42	0	2	56	1.11
56051553--56051627	16	4.7	15	75	14	60	33	5	0	61	1.19
56051578--56051606	11	2.7	11	94	5	51	41	0	0	58	0.98
56051543--56051663	49	2.4	50	91	4	192	38	4	0	57	1.18
56051985--56052101	58	2.0	58	100	0	234	37	14	3	44	1.62
56068752--56068791	15	2.7	15	96	0	71	17	50	32	0	1.47
56068747--56068789	15	2.6	17	82	17	63	16	51	32	0	1.45
56076026--56076066	16	2.6	16	85	11	50	65	14	0	19	1.26
56076072--56076103	15	2.0	17	88	11	50	62	9	0	28	1.26
56089411--56089443	3	11.0	3	100	0	66	66	0	0	33	0.92
56099239--56099317	39	2.0	39	95	0	140	54	13	11	20	1.70
56100405--56100442	20	2.0	20	84	5	51	57	2	0	39	1.12
56103122--56103182	17	3.6	17	77	18	65	29	0	1	68	0.99
56111608--56111648	20	2.2	20	86	8	59	41	9	0	48	1.36
56112068--56112128	13	4.7	13	68	0	50	45	3	9	40	1.53
56112313--56112409	31	2.9	32	72	16	81	50	1	3	45	1.24
56123879--56123936	30	1.9	30	85	0	80	34	18	24	22	1.96
56126919--56126961	11	3.7	11	81	6	50	65	4	0	30	1.13
56130161--56130200	15	2.7	15	92	0	62	50	0	7	42	1.30
56136589--56136634	23	2.0	24	83	12	60	41	10	10	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56145234--56145284	27	1.9	26	88	4	75	54	3	0	41	1.19
56145256--56145303	22	2.0	25	88	11	75	54	4	0	41	1.20
56146019--56146060	22	1.9	22	95	0	75	59	0	0	40	0.97
56150813--56150860	24	2.0	24	88	8	71	68	6	10	14	1.37
56154867--56154901	6	6.0	6	96	3	63	68	14	17	0	1.21
56161550--56161580	16	1.9	16	93	0	53	32	6	6	54	1.51
56164582--56164624	9	4.6	9	88	8	50	72	0	4	23	1.04
56171331--56171418	19	4.7	19	75	12	76	69	0	2	28	1.01
56171330--56171418	9	9.7	9	70	18	58	68	0	2	29	1.02
56171378--56171418	10	4.3	10	84	9	59	80	0	0	19	0.71
56176121--56176223	44	2.3	44	80	3	118	28	15	28	28	1.96
56176229--56177269	132	7.9	132	91	1	1611	29	18	24	27	1.98
56177155--56177328	89	2.0	89	92	0	294	31	20	22	26	1.98
56176214--56177457	529	2.4	527	84	3	1340	29	19	24	26	1.98
56177464--56177785	40	7.8	40	72	12	227	33	23	19	23	1.97
56177377--56177983	127	4.8	127	81	6	628	33	23	19	23	1.97
56179554--56179613	30	2.1	28	84	6	75	36	10	8	45	1.68
56180245--56180278	15	2.3	15	89	0	50	17	14	8	58	1.61
56182544--56182587	19	2.3	19	84	11	54	61	4	0	34	1.16
56183551--56183604	27	2.0	27	92	0	90	40	11	22	25	1.87
56184004--56184037	17	2.0	17	88	11	52	38	8	0	52	1.33
56186563--56186591	3	10.0	3	92	7	51	31	0	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56187663--56187771	37	3.0	37	93	2	177	24	22	16	36	1.94
56187735--56187924	46	4.0	46	88	8	290	27	21	15	35	1.94
56187778--56187924	52	2.9	51	88	8	214	27	21	15	35	1.94
56187735--56187924	98	1.9	99	93	1	328	27	21	15	35	1.94
56187891--56187957	33	2.0	33	100	0	134	26	17	23	31	1.97
56187698--56188024	177	1.8	179	89	5	518	26	21	16	36	1.94
56187924--56188030	46	2.3	46	93	3	180	26	20	16	36	1.94
56187845--56187994	79	1.9	79	98	0	291	26	20	20	33	1.97
56187793--56188030	125	1.9	127	89	7	374	26	21	17	34	1.95
56201470--56201540	21	3.2	21	67	21	63	40	11	8	39	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204